Clone BO05889 Report

Search the DGRC for BO05889

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptDf31-RA
Protein status:BO05889.pep: validated full length
Sequenced Size:583

Clone Sequence Records

BO05889.3prime Sequence

581 bp (580 high quality bases) assembled on 2005-12-02

> BO05889.3prime
ATGGTCTAGAAAGCTTGCGGCGGCCACTTCGCTAGCCTCGGCCCCATTCT
GAACCTCATCCTTTGTGCTGGCCTCATCAAGCTTAGCCTTTTTCTCCGGC
GTGGCGACGGCCTCATCTGCCTTGGCTGCAGCCTCATCCACCTTCCGCTT
TACAGCCTCAATGGCGGGAGCATCTGTTGAGTCACCGTTGGTGACCTCCT
CGGAGCCATTCTCGACAGCAGGTAGAACAGCTTCGCTGCTCTCTTTTTTG
GTGTCCTCCCCATCGGCAGCGGAATCCTCTTTTTTATCCTCGTCCTTCTT
CTCATCCTTATCGGCGGCAAAAGAAACAGTGGGCTCAGACGCCTTTTCAC
CATCGACTGCGTCGGTGGGCTCGGTCGCGCTGCTGTCGGCGGCTCCGTTC
TCCTTGGCTACGCTCTCCTCTTCGGCGCCACCGTTTTCTGTGATGCTCGC
CTTCTCAGCTGCTACCTCCTCGGCGGCAACTGCATCTTTCTTCACAGCAT
CAACTTCCTCAGCTGCGACCTTCTCGACAACAGGGGTCTCATTCTTTTGC
TCAGCCACATCAGCCATGTCGACTGATAACT

BO05889.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2207-PF 552 Df31-RF 1..549 567..19 2745 100 Minus
CG2207-PA 552 Df31-RA 1..549 567..19 2745 100 Minus
CG2207-PB 552 Df31-RB 1..549 567..19 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 1424 CG2207-RB 133..681 567..19 2745 100 Minus
Df31-RA 1532 CG2207-RA 241..789 567..19 2745 100 Minus
Df31-RF 2083 CG2207-RF 241..789 567..19 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21627842..21628209 174..541 1840 100 Plus
2L 23513712 2L 21627603..21627761 19..177 795 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:26:14 has no hits.

BO05889.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:06 Download gff for BO05889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PF 1..552 15..567 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:40 Download gff for BO05889.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PB 1..552 15..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:17 Download gff for BO05889.3prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..793 14..572 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:24 Download gff for BO05889.3prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..793 14..572 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:24 Download gff for BO05889.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21627599..21627757 14..173 98 <- Plus
2L 21627842..21628209 174..541 100 <- Plus
2L 21629667..21629697 542..572 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:17 Download gff for BO05889.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21627599..21627757 14..173 98 <- Plus
arm_2L 21627842..21628209 174..541 100 <- Plus
arm_2L 21629667..21629697 542..572 93   Plus

BO05889.5prime Sequence

581 bp (580 high quality bases) assembled on 2005-11-29

> BO05889.5prime
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCGCAAGCTTTCTAGACC

BO05889.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2207-PF 552 Df31-RF 1..549 17..565 2745 100 Plus
CG2207-PA 552 Df31-RA 1..549 17..565 2745 100 Plus
CG2207-PB 552 Df31-RB 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 1424 CG2207-RB 133..681 17..565 2745 100 Plus
Df31-RA 1532 CG2207-RA 241..789 17..565 2745 100 Plus
Df31-RF 2083 CG2207-RF 241..789 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21627842..21628209 410..43 1840 100 Minus
2L 23513712 2L 21627603..21627761 565..407 795 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:26:45 has no hits.

BO05889.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:07 Download gff for BO05889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PF 1..552 17..569 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:41 Download gff for BO05889.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2207-PB 1..552 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:19 Download gff for BO05889.5prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..793 12..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:41 Download gff for BO05889.5prime
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 236..793 12..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:41 Download gff for BO05889.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21627599..21627757 411..570 98 <- Minus
2L 21627842..21628209 43..410 100 <- Minus
2L 21629667..21629697 12..42 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:19 Download gff for BO05889.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21629667..21629697 12..42 93   Minus
arm_2L 21627599..21627757 411..570 98 <- Minus
arm_2L 21627842..21628209 43..410 100 <- Minus

BO05889.complete Sequence

583 bp (583 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630192

> BO05889.complete
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCGCAAGCTTTCTAGACCAT

BO05889.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 552 CG2207-PB 1..549 17..565 2745 100 Plus
Df31-RA 552 CG2207-PA 1..549 17..565 2745 100 Plus
Df31-RF 552 CG2207-PF 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-RB 1424 CG2207-RB 133..681 17..565 2745 100 Plus
Df31-RA 1532 CG2207-RA 241..789 17..565 2745 100 Plus
Df31-RF 2083 CG2207-RF 241..789 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21627842..21628209 410..43 1840 100 Minus
2L 23513712 2L 21627603..21627761 565..407 795 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:17:47 has no hits.

BO05889.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:46 Download gff for BO05889.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RB 1..552 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:17 Download gff for BO05889.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 232..789 12..570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:23 Download gff for BO05889.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 241..789 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:49 Download gff for BO05889.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RB 124..681 12..570 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:26 Download gff for BO05889.complete
Subject Subject Range Query Range Percent Splice Strand
Df31-RF 241..789 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:26 Download gff for BO05889.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21627601..21627757 411..567 98 <- Minus
2L 21627842..21628209 43..410 100 <- Minus
2L 21629667..21629692 17..42 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:23 Download gff for BO05889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21629667..21629692 17..42 100   Minus
arm_2L 21627601..21627757 411..567 98 <- Minus
arm_2L 21627842..21628209 43..410 100 <- Minus

BO05889.pep Sequence

Translation from 16 to 583

> BO05889.pep
MADVAEQKNETPVVEKVAAEEVDAVKKDAVAAEEVAAEKASITENGGAEE
ESVAKENGAADSSATEPTDAVDGEKASEPTVSFAADKDEKKDEDKKEDSA
ADGEDTKKESSEAVLPAVENGSEEVTNGDSTDAPAIEAVKRKVDEAAAKA
DEAVATPEKKAKLDEASTKDEVQNGAEASEVAAASFLDH

BO05889.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Df31-PB 183 CG2207-PB 1..183 1..183 886 100 Plus
Df31-PA 183 CG2207-PA 1..183 1..183 886 100 Plus
Df31-PF 183 CG2207-PF 1..183 1..183 886 100 Plus