Clone Sequence Records
BO05889.3prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-02
> BO05889.3prime
ATGGTCTAGAAAGCTTGCGGCGGCCACTTCGCTAGCCTCGGCCCCATTCT
GAACCTCATCCTTTGTGCTGGCCTCATCAAGCTTAGCCTTTTTCTCCGGC
GTGGCGACGGCCTCATCTGCCTTGGCTGCAGCCTCATCCACCTTCCGCTT
TACAGCCTCAATGGCGGGAGCATCTGTTGAGTCACCGTTGGTGACCTCCT
CGGAGCCATTCTCGACAGCAGGTAGAACAGCTTCGCTGCTCTCTTTTTTG
GTGTCCTCCCCATCGGCAGCGGAATCCTCTTTTTTATCCTCGTCCTTCTT
CTCATCCTTATCGGCGGCAAAAGAAACAGTGGGCTCAGACGCCTTTTCAC
CATCGACTGCGTCGGTGGGCTCGGTCGCGCTGCTGTCGGCGGCTCCGTTC
TCCTTGGCTACGCTCTCCTCTTCGGCGCCACCGTTTTCTGTGATGCTCGC
CTTCTCAGCTGCTACCTCCTCGGCGGCAACTGCATCTTTCTTCACAGCAT
CAACTTCCTCAGCTGCGACCTTCTCGACAACAGGGGTCTCATTCTTTTGC
TCAGCCACATCAGCCATGTCGACTGATAACT
BO05889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2207-PF | 552 | Df31-RF | 1..549 | 567..19 | 2745 | 100 | Minus |
CG2207-PA | 552 | Df31-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
CG2207-PB | 552 | Df31-RB | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 1424 | CG2207-RB | 133..681 | 567..19 | 2745 | 100 | Minus |
Df31-RA | 1532 | CG2207-RA | 241..789 | 567..19 | 2745 | 100 | Minus |
Df31-RF | 2083 | CG2207-RF | 241..789 | 567..19 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21627842..21628209 | 174..541 | 1840 | 100 | Plus |
2L | 23513712 | 2L | 21627603..21627761 | 19..177 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:26:14 has no hits.
BO05889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:06 Download gff for
BO05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PF | 1..552 | 15..567 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:40 Download gff for
BO05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PB | 1..552 | 15..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:17 Download gff for
BO05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..793 | 14..572 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:24 Download gff for
BO05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..793 | 14..572 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:24 Download gff for
BO05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21627599..21627757 | 14..173 | 98 | <- | Plus |
2L | 21627842..21628209 | 174..541 | 100 | <- | Plus |
2L | 21629667..21629697 | 542..572 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:17 Download gff for
BO05889.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21627599..21627757 | 14..173 | 98 | <- | Plus |
arm_2L | 21627842..21628209 | 174..541 | 100 | <- | Plus |
arm_2L | 21629667..21629697 | 542..572 | 93 | | Plus |
BO05889.5prime Sequence
581 bp (580 high quality bases) assembled on 2005-11-29
> BO05889.5prime
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCGCAAGCTTTCTAGACC
BO05889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2207-PF | 552 | Df31-RF | 1..549 | 17..565 | 2745 | 100 | Plus |
CG2207-PA | 552 | Df31-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG2207-PB | 552 | Df31-RB | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 1424 | CG2207-RB | 133..681 | 17..565 | 2745 | 100 | Plus |
Df31-RA | 1532 | CG2207-RA | 241..789 | 17..565 | 2745 | 100 | Plus |
Df31-RF | 2083 | CG2207-RF | 241..789 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21627842..21628209 | 410..43 | 1840 | 100 | Minus |
2L | 23513712 | 2L | 21627603..21627761 | 565..407 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:26:45 has no hits.
BO05889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:07 Download gff for
BO05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PF | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:41 Download gff for
BO05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2207-PB | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:19 Download gff for
BO05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..793 | 12..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:03:41 Download gff for
BO05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 236..793 | 12..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:03:41 Download gff for
BO05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21627599..21627757 | 411..570 | 98 | <- | Minus |
2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
2L | 21629667..21629697 | 12..42 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:19 Download gff for
BO05889.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21629667..21629697 | 12..42 | 93 | | Minus |
arm_2L | 21627599..21627757 | 411..570 | 98 | <- | Minus |
arm_2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
BO05889.complete Sequence
583 bp (583 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630192
> BO05889.complete
GAAGTTATCAGTCGACATGGCTGATGTGGCTGAGCAAAAGAATGAGACCC
CTGTTGTCGAGAAGGTCGCAGCTGAGGAAGTTGATGCTGTGAAGAAAGAT
GCAGTTGCCGCCGAGGAGGTAGCAGCTGAGAAGGCGAGCATCACAGAAAA
CGGTGGCGCCGAAGAGGAGAGCGTAGCCAAGGAGAACGGAGCCGCCGACA
GCAGCGCGACCGAGCCCACCGACGCAGTCGATGGTGAAAAGGCGTCTGAG
CCCACTGTTTCTTTTGCCGCCGATAAGGATGAGAAGAAGGACGAGGATAA
AAAAGAGGATTCCGCTGCCGATGGGGAGGACACCAAAAAAGAGAGCAGCG
AAGCTGTTCTACCTGCTGTCGAGAATGGCTCCGAGGAGGTCACCAACGGT
GACTCAACAGATGCTCCCGCCATTGAGGCTGTAAAGCGGAAGGTGGATGA
GGCTGCAGCCAAGGCAGATGAGGCCGTCGCCACGCCGGAGAAAAAGGCTA
AGCTTGATGAGGCCAGCACAAAGGATGAGGTTCAGAATGGGGCCGAGGCT
AGCGAAGTGGCCGCCGCAAGCTTTCTAGACCAT
BO05889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 552 | CG2207-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
Df31-RA | 552 | CG2207-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Df31-RF | 552 | CG2207-PF | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-RB | 1424 | CG2207-RB | 133..681 | 17..565 | 2745 | 100 | Plus |
Df31-RA | 1532 | CG2207-RA | 241..789 | 17..565 | 2745 | 100 | Plus |
Df31-RF | 2083 | CG2207-RF | 241..789 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21627842..21628209 | 410..43 | 1840 | 100 | Minus |
2L | 23513712 | 2L | 21627603..21627761 | 565..407 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:17:47 has no hits.
BO05889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:39:46 Download gff for
BO05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RB | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:53:17 Download gff for
BO05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 232..789 | 12..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:23 Download gff for
BO05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 241..789 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:39:49 Download gff for
BO05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RB | 124..681 | 12..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:26 Download gff for
BO05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Df31-RF | 241..789 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:26 Download gff for
BO05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21627601..21627757 | 411..567 | 98 | <- | Minus |
2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
2L | 21629667..21629692 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:23 Download gff for
BO05889.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21629667..21629692 | 17..42 | 100 | | Minus |
arm_2L | 21627601..21627757 | 411..567 | 98 | <- | Minus |
arm_2L | 21627842..21628209 | 43..410 | 100 | <- | Minus |
BO05889.pep Sequence
Translation from 16 to 583
> BO05889.pep
MADVAEQKNETPVVEKVAAEEVDAVKKDAVAAEEVAAEKASITENGGAEE
ESVAKENGAADSSATEPTDAVDGEKASEPTVSFAADKDEKKDEDKKEDSA
ADGEDTKKESSEAVLPAVENGSEEVTNGDSTDAPAIEAVKRKVDEAAAKA
DEAVATPEKKAKLDEASTKDEVQNGAEASEVAAASFLDH
BO05889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Df31-PB | 183 | CG2207-PB | 1..183 | 1..183 | 886 | 100 | Plus |
Df31-PA | 183 | CG2207-PA | 1..183 | 1..183 | 886 | 100 | Plus |
Df31-PF | 183 | CG2207-PF | 1..183 | 1..183 | 886 | 100 | Plus |