Clone Sequence Records
BO05890.3prime Sequence
908 bp (808 high quality bases) assembled on 2005-12-02
> BO05890.3prime
ATGGTCTAGAAAGCTTGCGCTTTCTTCCACCAGGGAGAAGCTGAGGCGTC
TCTTCGTGGCGTCTCTGGCCTGCACTTGCAACCACATGGCATCCAGCTGA
CAGGCATCCTCCAGCTCCTCGCCACCCAACTCCAGTCCGCGACTCAGCTG
GCAGTGCTCCTCCTCCAGCTCGCAGTCGCTGGTGGAATTGTGCCCACTGT
CCGGACTGATGTGGCGCATCTTCTGGGCGGGAGCTGCTATGGATCCGGAC
CTGGCCGCTGCAAGCAGCTTCTGCGCCGACTGCCTGACGCTGGAGGAGAT
CTTTGTGGTGATCTTTCGCTTGCGCCGCACCACCCGCTGCCTGCGCAGCT
GCAGGGAATGCCGCTTGGCATCCTGCGATTCGGATACGGTGGGCACGGGG
GAGCGCACCTCCCGCTCCTCGAAGCCCTCCGCTGGCAGGGAATCCCTCCG
CGAGGGCGACTTCCAGTACTCGCACAGATCGCTGGCCGGATCGAAGGCGG
GGCGGTAGGTGGGCGATGGCGTCTGGGTGGGGCCGTGCCCGTGTCCGTGG
CTGCTCCGGAGCACCTGCTGCCTGAGCCTGTGCCGCTGGCGGAGATGCTG
CCTGGGCTGGCGGTGCTGATGCTGGTGCTGTTGCTGTCTGGCGTTGGGCA
GCACCTTGCGGTTGCTCTCGAGGATGGCATCGATCATGCGCTCCAGGGTC
ACATCGCCCATCTGGCTGGAACTGAGCGTATTCTGTTCGCCGGTCGGAGG
TGCTGGATGCGGATGCGGATGTGGTAGTGGCTTCTGCTCCAGGTAACGCG
GCTTCTCGAAGTAGCTGTCCGGGATGCCCATGCCGCGCAGGGCGATCAGG
GAGCCAGGAATGATGGCGGCATTGGGCGAGTACTCCGCCTCGAAAGTGGG
CAGTGTGC
BO05890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PA | 1218 | CG12708-RA | 326..1215 | 908..19 | 4425 | 99.8 | Minus |
CG15646-PA | 1233 | CG15646-RA | 742..1049 | 549..242 | 1415 | 98.3 | Minus |
CG15646-PA | 1233 | CG15646-RA | 514..752 | 771..533 | 1095 | 98.3 | Minus |
CG15646-PA | 1233 | CG15646-RA | 371..524 | 908..755 | 695 | 98 | Minus |
CG15646-PA | 1233 | CG15646-RA | 1071..1124 | 229..176 | 145 | 90.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 697..1586 | 908..19 | 4435 | 99.9 | Minus |
CG12708-RA | 1586 | CG12708-RA | 581..1470 | 908..19 | 4435 | 99.9 | Minus |
CG15646-RB | 1697 | CG15646-RB | 658..1411 | 908..176 | 3130 | 95 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676732..15677621 | 908..19 | 4435 | 99.9 | Minus |
X | 23542271 | X | 15668171..15668924 | 176..908 | 3015 | 94.6 | Plus |
Blast to na_te.dros performed 2015-02-11 16:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 646..547 | 148 | 63.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 680..550 | 146 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 646..547 | 141 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 646..561 | 139 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 647..581 | 134 | 68.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 666..565 | 134 | 66.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 689..581 | 120 | 60.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 666..606 | 120 | 71.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 637..536 | 113 | 59.2 | Minus |
BO05890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:07 Download gff for
BO05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 326..1218 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:42 Download gff for
BO05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 326..1218 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:34 Download gff for
BO05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 556..1448 | 15..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:15 Download gff for
BO05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 581..1473 | 15..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:15 Download gff for
BO05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676732..15677624 | 15..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:34 Download gff for
BO05890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570765..15571657 | 15..908 | 99 | | Minus |
BO05890.5prime Sequence
942 bp (846 high quality bases) assembled on 2005-11-29
> BO05890.5prime
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCANGATGCCNAGCGGCATTCCCTGCA
GCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAAGATCAA
BO05890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PA | 1218 | CG12708-RA | 1..925 | 17..941 | 4587 | 99.7 | Plus |
CG15646-PA | 1233 | CG15646-RA | 127..524 | 98..495 | 1790 | 97.9 | Plus |
CG15646-PA | 1233 | CG15646-RA | 514..752 | 479..717 | 1095 | 98.3 | Plus |
CG15646-PA | 1233 | CG15646-RA | 742..982 | 701..941 | 1092 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 372..1296 | 17..941 | 4603 | 99.8 | Plus |
CG12708-RA | 1586 | CG12708-RA | 256..1180 | 17..941 | 4603 | 99.8 | Plus |
CG15646-RB | 1697 | CG15646-RB | 414..1269 | 98..941 | 3878 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676407..15677331 | 17..941 | 4603 | 99.8 | Plus |
X | 23542271 | X | 15668313..15669168 | 941..98 | 3828 | 97 | Minus |
Blast to na_te.dros performed 2015-02-12 10:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 604..703 | 148 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 570..700 | 146 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 604..703 | 141 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 604..689 | 139 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 603..669 | 134 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 584..685 | 134 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 561..669 | 120 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1098..1160 | 584..644 | 120 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 613..714 | 113 | 59.2 | Plus |
BO05890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:08 Download gff for
BO05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:44 Download gff for
BO05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:21 Download gff for
BO05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 226..1154 | 10..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:05 Download gff for
BO05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 251..1179 | 10..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:05 Download gff for
BO05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676402..15677330 | 10..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:21 Download gff for
BO05890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570435..15571363 | 10..940 | 99 | | Plus |
BO05890.complete Sequence
1249 bp (1249 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630193
> BO05890.complete
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCAGGATGCCAAGCGGCATTCCCTGCA
GCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAAGATCACCACAAAGA
TCTCCTCCAGCGTCAGGCAGTCGGCGCAGAAGCTGCTTGCAGCGGCCAGG
TCCGGATCCATAGCAGCTCCCGCCCAGAAGATGCGCCACATCAGTCCGGA
CAGTGGGCACAATTCCACCAGCGACTGCGAGCTGGAGGAGGAGCACTGCC
AGCTGAGTCGCGGACTGGAGTTGGGTGGCGAGGAGCTGGAGGATGCCTGT
CAGCTGGATGCCATGTGGTTGCAAGTGCAGGCCAGAGACGCCACGAAGAG
ACGCCTCAGCTTCTCCCTGGTGGAAGAAAGCGCAAGCTTTCTAGACCAT
BO05890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1218 | CG12708-PB | 1..1215 | 17..1231 | 6075 | 100 | Plus |
CG12708-RA | 1218 | CG12708-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
CG15646-RB | 1233 | CG15646-PB | 127..1124 | 98..1074 | 4160 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-RB | 1702 | CG12708-RB | 372..1586 | 17..1231 | 6075 | 100 | Plus |
CG12708-RA | 1586 | CG12708-RA | 256..1470 | 17..1231 | 6075 | 100 | Plus |
CG15646-RB | 1697 | CG15646-RB | 414..1411 | 98..1074 | 4160 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15676407..15677621 | 17..1231 | 6075 | 100 | Plus |
X | 23542271 | X | 15668171..15669168 | 1074..98 | 4160 | 95.4 | Minus |
Blast to na_te.dros performed 2014-11-27 10:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6893 | 604..703 | 148 | 63.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6851 | 570..700 | 146 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6827 | 604..703 | 141 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6857 | 604..689 | 139 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2383 | 603..669 | 134 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6889 | 584..685 | 134 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2416 | 561..669 | 120 | 60.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2482 | 613..714 | 113 | 59.2 | Plus |
BO05890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:53 Download gff for
BO05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RB | 1..1218 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:02 Download gff for
BO05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RB | 245..1467 | 10..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:52 Download gff for
BO05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 231..1445 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:53 Download gff for
BO05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RB | 245..1467 | 10..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:03 Download gff for
BO05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12708-RA | 256..1470 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:03 Download gff for
BO05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15676407..15677621 | 17..1233 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:52 Download gff for
BO05890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15570440..15571654 | 17..1233 | 99 | | Plus |
BO05890.pep Sequence
Translation from 16 to 1249
> BO05890.pep
MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP
GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV
TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ
KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ
QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA
SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR
VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS
TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS
LVEESASFLDH
BO05890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12708-PB | 405 | CG12708-PB | 1..405 | 1..405 | 2099 | 100 | Plus |
CG12708-PA | 405 | CG12708-PA | 1..405 | 1..405 | 2099 | 100 | Plus |
CG15646-PB | 410 | CG15646-PB | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG15646-PA | 410 | CG15646-PA | 1..405 | 1..404 | 1670 | 81.3 | Plus |
CG12496-PA | 353 | CG12496-PA | 1..259 | 1..253 | 196 | 29.8 | Plus |