Clone BO05890 Report

Search the DGRC for BO05890

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG12708-RA
Protein status:BO05890.pep: validated full length
Sequenced Size:1249

Clone Sequence Records

BO05890.3prime Sequence

908 bp (808 high quality bases) assembled on 2005-12-02

> BO05890.3prime
ATGGTCTAGAAAGCTTGCGCTTTCTTCCACCAGGGAGAAGCTGAGGCGTC
TCTTCGTGGCGTCTCTGGCCTGCACTTGCAACCACATGGCATCCAGCTGA
CAGGCATCCTCCAGCTCCTCGCCACCCAACTCCAGTCCGCGACTCAGCTG
GCAGTGCTCCTCCTCCAGCTCGCAGTCGCTGGTGGAATTGTGCCCACTGT
CCGGACTGATGTGGCGCATCTTCTGGGCGGGAGCTGCTATGGATCCGGAC
CTGGCCGCTGCAAGCAGCTTCTGCGCCGACTGCCTGACGCTGGAGGAGAT
CTTTGTGGTGATCTTTCGCTTGCGCCGCACCACCCGCTGCCTGCGCAGCT
GCAGGGAATGCCGCTTGGCATCCTGCGATTCGGATACGGTGGGCACGGGG
GAGCGCACCTCCCGCTCCTCGAAGCCCTCCGCTGGCAGGGAATCCCTCCG
CGAGGGCGACTTCCAGTACTCGCACAGATCGCTGGCCGGATCGAAGGCGG
GGCGGTAGGTGGGCGATGGCGTCTGGGTGGGGCCGTGCCCGTGTCCGTGG
CTGCTCCGGAGCACCTGCTGCCTGAGCCTGTGCCGCTGGCGGAGATGCTG
CCTGGGCTGGCGGTGCTGATGCTGGTGCTGTTGCTGTCTGGCGTTGGGCA
GCACCTTGCGGTTGCTCTCGAGGATGGCATCGATCATGCGCTCCAGGGTC
ACATCGCCCATCTGGCTGGAACTGAGCGTATTCTGTTCGCCGGTCGGAGG
TGCTGGATGCGGATGCGGATGTGGTAGTGGCTTCTGCTCCAGGTAACGCG
GCTTCTCGAAGTAGCTGTCCGGGATGCCCATGCCGCGCAGGGCGATCAGG
GAGCCAGGAATGATGGCGGCATTGGGCGAGTACTCCGCCTCGAAAGTGGG
CAGTGTGC

BO05890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PA 1218 CG12708-RA 326..1215 908..19 4425 99.8 Minus
CG15646-PA 1233 CG15646-RA 742..1049 549..242 1415 98.3 Minus
CG15646-PA 1233 CG15646-RA 514..752 771..533 1095 98.3 Minus
CG15646-PA 1233 CG15646-RA 371..524 908..755 695 98 Minus
CG15646-PA 1233 CG15646-RA 1071..1124 229..176 145 90.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 697..1586 908..19 4435 99.9 Minus
CG12708-RA 1586 CG12708-RA 581..1470 908..19 4435 99.9 Minus
CG15646-RB 1697 CG15646-RB 658..1411 908..176 3130 95 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676732..15677621 908..19 4435 99.9 Minus
X 23542271 X 15668171..15668924 176..908 3015 94.6 Plus
Blast to na_te.dros performed 2015-02-11 16:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 646..547 148 63.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 680..550 146 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 646..547 141 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 646..561 139 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 647..581 134 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 666..565 134 66.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 689..581 120 60.6 Minus
roo 9092 roo DM_ROO 9092bp 1098..1160 666..606 120 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 637..536 113 59.2 Minus

BO05890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:07 Download gff for BO05890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 326..1218 15..908 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:42 Download gff for BO05890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 326..1218 15..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:34 Download gff for BO05890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 556..1448 15..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:15 Download gff for BO05890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 581..1473 15..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:15 Download gff for BO05890.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15676732..15677624 15..908 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:34 Download gff for BO05890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570765..15571657 15..908 99   Minus

BO05890.5prime Sequence

942 bp (846 high quality bases) assembled on 2005-11-29

> BO05890.5prime
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCANGATGCCNAGCGGCATTCCCTGCA
GCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAAGATCAA

BO05890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PA 1218 CG12708-RA 1..925 17..941 4587 99.7 Plus
CG15646-PA 1233 CG15646-RA 127..524 98..495 1790 97.9 Plus
CG15646-PA 1233 CG15646-RA 514..752 479..717 1095 98.3 Plus
CG15646-PA 1233 CG15646-RA 742..982 701..941 1092 97.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 372..1296 17..941 4603 99.8 Plus
CG12708-RA 1586 CG12708-RA 256..1180 17..941 4603 99.8 Plus
CG15646-RB 1697 CG15646-RB 414..1269 98..941 3878 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676407..15677331 17..941 4603 99.8 Plus
X 23542271 X 15668313..15669168 941..98 3828 97 Minus
Blast to na_te.dros performed 2015-02-12 10:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 604..703 148 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 570..700 146 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 604..703 141 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 604..689 139 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 603..669 134 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 584..685 134 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 561..669 120 60.6 Plus
roo 9092 roo DM_ROO 9092bp 1098..1160 584..644 120 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 613..714 113 59.2 Plus

BO05890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:08 Download gff for BO05890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:44 Download gff for BO05890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:21 Download gff for BO05890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 226..1154 10..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:05 Download gff for BO05890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 251..1179 10..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:05 Download gff for BO05890.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15676402..15677330 10..940 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:21 Download gff for BO05890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570435..15571363 10..940 99   Plus

BO05890.complete Sequence

1249 bp (1249 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630193

> BO05890.complete
GAAGTTATCAGTCGACATGCTCAAGTGGGCCGTCAACCAGCCACGACCCT
CGTACTTGGCCAGGGATGAGGTGATGGCCACCAGCAGCGAGGCAGTCGGC
TCCAGCTACAGCGAGTTCCACGCCCTGCGTGGCAAACTCAAGAGGAAGTC
GATCGGAGTGGCGCCAGGCAAGGAGAACCAGCTGACCTCCACGCCACTGC
CGGCCAGCTCCTTGAGCCTCCATGCGCGCACACCACTGCTCAAGGACCTC
AGCAACATCCTGGCCACGCCGCCATCGGGAGGAGCAAGTGGCGCTAATGG
GGCAACTGGAGGTGTAACTGCTGTTCCCCTGAAGTTCGCCTGCACACTGC
CCACCTTCGAGGCGGAGTACTCGCCCAATGCCGCCATCATTCCTGGCTCC
CTGATCGCCCTGCGCGGCATGGGCATCCCGGACAGCTACTTCGAGAAGCC
GCGTTACCTGGAGCAGAAGCCACTACCACATCCGCATCCGCATCCAGCAC
CTCCGACCGGCGAACAGAATACGCTCAGTTCCAGCCAGATGGGCGATGTG
ACCCTGGAGCGCATGATCGATGCCATCCTCGAGAGCAACCGCAAGGTGCT
GCCCAACGCCAGACAGCAACAGCACCAGCATCAGCACCGCCAGCCCAGGC
AGCATCTCCGCCAGCGGCACAGGCTCAGGCAGCAGGTGCTCCGGAGCAGC
CACGGACACGGGCACGGCCCCACCCAGACGCCATCGCCCACCTACCGCCC
CGCCTTCGATCCGGCCAGCGATCTGTGCGAGTACTGGAAGTCGCCCTCGC
GGAGGGATTCCCTGCCAGCGGAGGGCTTCGAGGAGCGGGAGGTGCGCTCC
CCCGTGCCCACCGTATCCGAATCGCAGGATGCCAAGCGGCATTCCCTGCA
GCTGCGCAGGCAGCGGGTGGTGCGGCGCAAGCGAAAGATCACCACAAAGA
TCTCCTCCAGCGTCAGGCAGTCGGCGCAGAAGCTGCTTGCAGCGGCCAGG
TCCGGATCCATAGCAGCTCCCGCCCAGAAGATGCGCCACATCAGTCCGGA
CAGTGGGCACAATTCCACCAGCGACTGCGAGCTGGAGGAGGAGCACTGCC
AGCTGAGTCGCGGACTGGAGTTGGGTGGCGAGGAGCTGGAGGATGCCTGT
CAGCTGGATGCCATGTGGTTGCAAGTGCAGGCCAGAGACGCCACGAAGAG
ACGCCTCAGCTTCTCCCTGGTGGAAGAAAGCGCAAGCTTTCTAGACCAT

BO05890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1218 CG12708-PB 1..1215 17..1231 6075 100 Plus
CG12708-RA 1218 CG12708-PA 1..1215 17..1231 6075 100 Plus
CG15646-RB 1233 CG15646-PB 127..1124 98..1074 4160 95.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-RB 1702 CG12708-RB 372..1586 17..1231 6075 100 Plus
CG12708-RA 1586 CG12708-RA 256..1470 17..1231 6075 100 Plus
CG15646-RB 1697 CG15646-RB 414..1411 98..1074 4160 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15676407..15677621 17..1231 6075 100 Plus
X 23542271 X 15668171..15669168 1074..98 4160 95.4 Minus
Blast to na_te.dros performed 2014-11-27 10:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6893 604..703 148 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6851 570..700 146 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6827 604..703 141 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6857 604..689 139 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2383 603..669 134 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6889 584..685 134 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2416 561..669 120 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2482 613..714 113 59.2 Plus

BO05890.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:53 Download gff for BO05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 1..1218 17..1235 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:02 Download gff for BO05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 245..1467 10..1235 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:52 Download gff for BO05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 231..1445 17..1233 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:53 Download gff for BO05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RB 245..1467 10..1235 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:03 Download gff for BO05890.complete
Subject Subject Range Query Range Percent Splice Strand
CG12708-RA 256..1470 17..1233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:03 Download gff for BO05890.complete
Subject Subject Range Query Range Percent Splice Strand
X 15676407..15677621 17..1233 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:52 Download gff for BO05890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15570440..15571654 17..1233 99   Plus

BO05890.pep Sequence

Translation from 16 to 1249

> BO05890.pep
MLKWAVNQPRPSYLARDEVMATSSEAVGSSYSEFHALRGKLKRKSIGVAP
GKENQLTSTPLPASSLSLHARTPLLKDLSNILATPPSGGASGANGATGGV
TAVPLKFACTLPTFEAEYSPNAAIIPGSLIALRGMGIPDSYFEKPRYLEQ
KPLPHPHPHPAPPTGEQNTLSSSQMGDVTLERMIDAILESNRKVLPNARQ
QQHQHQHRQPRQHLRQRHRLRQQVLRSSHGHGHGPTQTPSPTYRPAFDPA
SDLCEYWKSPSRRDSLPAEGFEEREVRSPVPTVSESQDAKRHSLQLRRQR
VVRRKRKITTKISSSVRQSAQKLLAAARSGSIAAPAQKMRHISPDSGHNS
TSDCELEEEHCQLSRGLELGGEELEDACQLDAMWLQVQARDATKRRLSFS
LVEESASFLDH

BO05890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12708-PB 405 CG12708-PB 1..405 1..405 2099 100 Plus
CG12708-PA 405 CG12708-PA 1..405 1..405 2099 100 Plus
CG15646-PB 410 CG15646-PB 1..405 1..404 1670 81.3 Plus
CG15646-PA 410 CG15646-PA 1..405 1..404 1670 81.3 Plus
CG12496-PA 353 CG12496-PA 1..259 1..253 196 29.8 Plus