Clone Sequence Records
BO05891.3prime Sequence
761 bp (760 high quality bases) assembled on 2005-12-02
> BO05891.3prime
ATGGTCTAGAAAGCTTGCCAGGTGCTTGCCGAACCACTTGTGGTCCACGG
GCGAGAGCCAACGGTGGCAGCCGCTGAGGTTGTTCTGGATCACGTACTTC
ATGGTAAAGGGGTTCTCATTCTGGCGGGTCTGTTCCTCCTCGGCGACGCG
CTGTTCGTCGAGCATCTCCTGGGAAACGACGGTGGCCTGGAAGGGCAGCT
GGTTGGCCACCTGCTGCAGGAACTGCTTGACCTCAACGAACTCGCACTTG
CCGGCTATCTCGACAATGACGCGACCGGCCTTGATGGGGGTCACGTAGTG
GTCGATGGCTCCCTTTCCGCCGCCCATCCGTTGGCCCTGGCCCTTCTTAG
TGATCGGCTGCCAGGGTGCGGGAACGCGCCATGTGGCGAACATAGTGTTG
ACGTTCATCTTGCGTCCGATGGTCAAACGCATCATTTCGTAGTGGCCCCA
GCGCAGGCGCCCTCCGCCAGTGGCCACGATTGCGTACTGCTTATGGAGCA
GCGTGTTGTGCACCATCTCCGGACCGCGCATGTATCGCAGGCGCTTCTGC
ATCTTTGGCGGACGGATGTTTGGCGGCAGCTGGGGCTGGCGCTCAATGAC
CCTCAGCTTGGGTCTCTCCGGCTGCTCCACATTCTGGTATTTAATAGGCG
GAGCGAAATACTTAAGACCGGCTGTGTTGACAATTGCCATGTTGCCCGAC
GCAAGGCTTTGCTTAAAGAGCTGGGAGACTAACTTTAATGAGAGCATGTC
GACTGATAACT
BO05891.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3109-PA | 732 | mRpL16-RA | 1..729 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 1076 | CG3109-RB | 91..820 | 748..19 | 3650 | 100 | Minus |
mRpL16-RA | 869 | CG3109-RA | 91..820 | 748..19 | 3650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1890613..1891226 | 632..19 | 3070 | 100 | Minus |
X | 23542271 | X | 1890478..1890543 | 698..633 | 330 | 100 | Minus |
X | 23542271 | X | 1890346..1890395 | 748..699 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:48:37 has no hits.
BO05891.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:09 Download gff for
BO05891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:46 Download gff for
BO05891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:38 Download gff for
BO05891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..820 | 19..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:44 Download gff for
BO05891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..820 | 19..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:44 Download gff for
BO05891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1890342..1890395 | 699..752 | 96 | -> | Minus |
X | 1890478..1890543 | 633..698 | 100 | -> | Minus |
X | 1890613..1891226 | 19..632 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:38 Download gff for
BO05891.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1784375..1784428 | 699..752 | 96 | -> | Minus |
arm_X | 1784511..1784576 | 633..698 | 100 | -> | Minus |
arm_X | 1784646..1785259 | 19..632 | 100 | | Minus |
BO05891.5prime Sequence
761 bp (760 high quality bases) assembled on 2005-12-02
> BO05891.5prime
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGGCAAG
CTTTCTAGACC
BO05891.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3109-PA | 732 | mRpL16-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 1076 | CG3109-RB | 91..820 | 16..745 | 3650 | 100 | Plus |
mRpL16-RA | 869 | CG3109-RA | 91..820 | 16..745 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1890613..1891226 | 132..745 | 3070 | 100 | Plus |
X | 23542271 | X | 1890478..1890543 | 66..131 | 330 | 100 | Plus |
X | 23542271 | X | 1890346..1890395 | 16..65 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:56:04 has no hits.
BO05891.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:10 Download gff for
BO05891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:47 Download gff for
BO05891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3109-PA | 1..732 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:35 Download gff for
BO05891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..820 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:13 Download gff for
BO05891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 87..820 | 12..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:13 Download gff for
BO05891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1890342..1890395 | 12..65 | 96 | -> | Plus |
X | 1890478..1890543 | 66..131 | 100 | -> | Plus |
X | 1890613..1891226 | 132..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:35 Download gff for
BO05891.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1784375..1784428 | 12..65 | 96 | -> | Plus |
arm_X | 1784511..1784576 | 66..131 | 100 | -> | Plus |
arm_X | 1784646..1785259 | 132..745 | 100 | | Plus |
BO05891.complete Sequence
763 bp (763 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630194
> BO05891.complete
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGGCAAG
CTTTCTAGACCAT
BO05891.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 732 | CG3109-PB | 1..729 | 17..745 | 3645 | 100 | Plus |
mRpL16-RA | 732 | CG3109-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-RB | 1076 | CG3109-RB | 91..820 | 16..745 | 3650 | 100 | Plus |
mRpL16-RA | 869 | CG3109-RA | 91..820 | 16..745 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1890613..1891226 | 132..745 | 3070 | 100 | Plus |
X | 23542271 | X | 1890478..1890543 | 66..131 | 330 | 100 | Plus |
X | 23542271 | X | 1890346..1890395 | 16..65 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:10:31 has no hits.
BO05891.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:54 Download gff for
BO05891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 1..732 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:04 Download gff for
BO05891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 44..777 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:06 Download gff for
BO05891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 92..820 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:54 Download gff for
BO05891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 44..777 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:03 Download gff for
BO05891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL16-RA | 92..820 | 17..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:03 Download gff for
BO05891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1890347..1890395 | 17..65 | 100 | -> | Plus |
X | 1890478..1890543 | 66..131 | 100 | -> | Plus |
X | 1890613..1891226 | 132..747 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:06 Download gff for
BO05891.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1784380..1784428 | 17..65 | 100 | -> | Plus |
arm_X | 1784511..1784576 | 66..131 | 100 | -> | Plus |
arm_X | 1784646..1785259 | 132..747 | 99 | | Plus |
BO05891.pep Sequence
Translation from 16 to 763
> BO05891.pep
MLSLKLVSQLFKQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRV
IERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRW
GHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDH
YVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQR
VAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGKHLASFLDH
BO05891.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL16-PB | 243 | CG3109-PB | 1..243 | 1..243 | 1292 | 100 | Plus |
mRpL16-PA | 243 | CG3109-PA | 1..243 | 1..243 | 1292 | 100 | Plus |