Clone BO05891 Report

Search the DGRC for BO05891

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL16-RA
Protein status:BO05891.pep: validated full length
Sequenced Size:763

Clone Sequence Records

BO05891.3prime Sequence

761 bp (760 high quality bases) assembled on 2005-12-02

> BO05891.3prime
ATGGTCTAGAAAGCTTGCCAGGTGCTTGCCGAACCACTTGTGGTCCACGG
GCGAGAGCCAACGGTGGCAGCCGCTGAGGTTGTTCTGGATCACGTACTTC
ATGGTAAAGGGGTTCTCATTCTGGCGGGTCTGTTCCTCCTCGGCGACGCG
CTGTTCGTCGAGCATCTCCTGGGAAACGACGGTGGCCTGGAAGGGCAGCT
GGTTGGCCACCTGCTGCAGGAACTGCTTGACCTCAACGAACTCGCACTTG
CCGGCTATCTCGACAATGACGCGACCGGCCTTGATGGGGGTCACGTAGTG
GTCGATGGCTCCCTTTCCGCCGCCCATCCGTTGGCCCTGGCCCTTCTTAG
TGATCGGCTGCCAGGGTGCGGGAACGCGCCATGTGGCGAACATAGTGTTG
ACGTTCATCTTGCGTCCGATGGTCAAACGCATCATTTCGTAGTGGCCCCA
GCGCAGGCGCCCTCCGCCAGTGGCCACGATTGCGTACTGCTTATGGAGCA
GCGTGTTGTGCACCATCTCCGGACCGCGCATGTATCGCAGGCGCTTCTGC
ATCTTTGGCGGACGGATGTTTGGCGGCAGCTGGGGCTGGCGCTCAATGAC
CCTCAGCTTGGGTCTCTCCGGCTGCTCCACATTCTGGTATTTAATAGGCG
GAGCGAAATACTTAAGACCGGCTGTGTTGACAATTGCCATGTTGCCCGAC
GCAAGGCTTTGCTTAAAGAGCTGGGAGACTAACTTTAATGAGAGCATGTC
GACTGATAACT

BO05891.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3109-PA 732 mRpL16-RA 1..729 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..820 748..19 3650 100 Minus
mRpL16-RA 869 CG3109-RA 91..820 748..19 3650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891226 632..19 3070 100 Minus
X 23542271 X 1890478..1890543 698..633 330 100 Minus
X 23542271 X 1890346..1890395 748..699 250 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:48:37 has no hits.

BO05891.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:09 Download gff for BO05891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 18..747 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:46 Download gff for BO05891.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 18..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:38 Download gff for BO05891.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..820 19..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:13:44 Download gff for BO05891.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..820 19..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:13:44 Download gff for BO05891.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1890342..1890395 699..752 96 -> Minus
X 1890478..1890543 633..698 100 -> Minus
X 1890613..1891226 19..632 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:38 Download gff for BO05891.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784375..1784428 699..752 96 -> Minus
arm_X 1784511..1784576 633..698 100 -> Minus
arm_X 1784646..1785259 19..632 100   Minus

BO05891.5prime Sequence

761 bp (760 high quality bases) assembled on 2005-12-02

> BO05891.5prime
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGGCAAG
CTTTCTAGACC

BO05891.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3109-PA 732 mRpL16-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..820 16..745 3650 100 Plus
mRpL16-RA 869 CG3109-RA 91..820 16..745 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891226 132..745 3070 100 Plus
X 23542271 X 1890478..1890543 66..131 330 100 Plus
X 23542271 X 1890346..1890395 16..65 250 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:56:04 has no hits.

BO05891.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:10 Download gff for BO05891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 17..746 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:47 Download gff for BO05891.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3109-PA 1..732 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:35 Download gff for BO05891.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..820 12..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:46:13 Download gff for BO05891.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 87..820 12..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:46:13 Download gff for BO05891.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1890342..1890395 12..65 96 -> Plus
X 1890478..1890543 66..131 100 -> Plus
X 1890613..1891226 132..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:35 Download gff for BO05891.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784375..1784428 12..65 96 -> Plus
arm_X 1784511..1784576 66..131 100 -> Plus
arm_X 1784646..1785259 132..745 100   Plus

BO05891.complete Sequence

763 bp (763 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630194

> BO05891.complete
GAAGTTATCAGTCGACATGCTCTCATTAAAGTTAGTCTCCCAGCTCTTTA
AGCAAAGCCTTGCGTCGGGCAACATGGCAATTGTCAACACAGCCGGTCTT
AAGTATTTCGCTCCGCCTATTAAATACCAGAATGTGGAGCAGCCGGAGAG
ACCCAAGCTGAGGGTCATTGAGCGCCAGCCCCAGCTGCCGCCAAACATCC
GTCCGCCAAAGATGCAGAAGCGCCTGCGATACATGCGCGGTCCGGAGATG
GTGCACAACACGCTGCTCCATAAGCAGTACGCAATCGTGGCCACTGGCGG
AGGGCGCCTGCGCTGGGGCCACTACGAAATGATGCGTTTGACCATCGGAC
GCAAGATGAACGTCAACACTATGTTCGCCACATGGCGCGTTCCCGCACCC
TGGCAGCCGATCACTAAGAAGGGCCAGGGCCAACGGATGGGCGGCGGAAA
GGGAGCCATCGACCACTACGTGACCCCCATCAAGGCCGGTCGCGTCATTG
TCGAGATAGCCGGCAAGTGCGAGTTCGTTGAGGTCAAGCAGTTCCTGCAG
CAGGTGGCCAACCAGCTGCCCTTCCAGGCCACCGTCGTTTCCCAGGAGAT
GCTCGACGAACAGCGCGTCGCCGAGGAGGAACAGACCCGCCAGAATGAGA
ACCCCTTTACCATGAAGTACGTGATCCAGAACAACCTCAGCGGCTGCCAC
CGTTGGCTCTCGCCCGTGGACCACAAGTGGTTCGGCAAGCACCTGGCAAG
CTTTCTAGACCAT

BO05891.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 732 CG3109-PB 1..729 17..745 3645 100 Plus
mRpL16-RA 732 CG3109-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-RB 1076 CG3109-RB 91..820 16..745 3650 100 Plus
mRpL16-RA 869 CG3109-RA 91..820 16..745 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1890613..1891226 132..745 3070 100 Plus
X 23542271 X 1890478..1890543 66..131 330 100 Plus
X 23542271 X 1890346..1890395 16..65 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:10:31 has no hits.

BO05891.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:54 Download gff for BO05891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 1..732 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:04 Download gff for BO05891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 44..777 12..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:06 Download gff for BO05891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 92..820 17..747 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:54 Download gff for BO05891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 44..777 12..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:03 Download gff for BO05891.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL16-RA 92..820 17..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:03 Download gff for BO05891.complete
Subject Subject Range Query Range Percent Splice Strand
X 1890347..1890395 17..65 100 -> Plus
X 1890478..1890543 66..131 100 -> Plus
X 1890613..1891226 132..747 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:06 Download gff for BO05891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1784380..1784428 17..65 100 -> Plus
arm_X 1784511..1784576 66..131 100 -> Plus
arm_X 1784646..1785259 132..747 99   Plus

BO05891.pep Sequence

Translation from 16 to 763

> BO05891.pep
MLSLKLVSQLFKQSLASGNMAIVNTAGLKYFAPPIKYQNVEQPERPKLRV
IERQPQLPPNIRPPKMQKRLRYMRGPEMVHNTLLHKQYAIVATGGGRLRW
GHYEMMRLTIGRKMNVNTMFATWRVPAPWQPITKKGQGQRMGGGKGAIDH
YVTPIKAGRVIVEIAGKCEFVEVKQFLQQVANQLPFQATVVSQEMLDEQR
VAEEEQTRQNENPFTMKYVIQNNLSGCHRWLSPVDHKWFGKHLASFLDH

BO05891.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL16-PB 243 CG3109-PB 1..243 1..243 1292 100 Plus
mRpL16-PA 243 CG3109-PA 1..243 1..243 1292 100 Plus