Clone BO05894 Report

Search the DGRC for BO05894

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG12129-RA
Protein status:BO05894.pep: validated full length
Sequenced Size:1090

Clone Sequence Records

BO05894.3prime Sequence

928 bp (741 high quality bases) assembled on 2005-12-02

> BO05894.3prime
ATGGTCTAGAAAGCTTGCGAATTCGAGACTACCGCTTATCTTATAGAACT
CATCCTCGGAGCGCGAATTCAATACGCACAGATGTACAGCCTGGCACTGG
GCTACTCCGAAATCGAAGTCTCCAAAGCGCTTGAGGATCTCGCGAGCGTC
AAAGCTGTTACCAGATTTATTTGCCTTATTGCGGTAGCGGTTGTTCATCA
CCGTCATGTGCAGTTTAATGGATTCACGTTCAATATTGTCTGTAGCGCAC
AGTGCTGTAGTCTGAAAGTGGGCCAGACACTGATCCGCAAACTTTTGCAG
ATCCGGAGACTCGATGCGGGCATACAGAATGCGAGTGGAGCTTGGATCGT
CGTTCATAATCTCCAGGCCCTTAACTTTAATTTGGAAAGGTATTTTAAGG
CCATCCAGTAAACGACGACATGATTCCAGATTCTTCAGGGCTTCTTGGCG
TTCAATGTCATCTAGCAGCACATAGACGCCTAAGGTAAGATGAATGCAGC
ACTCCGGAGTGAAAAGCTCCTTATCGATGCCTGGCAACTCGGCCTCCAAA
ATGCATTTCTTTAGTTCCATAAAACGCTCCTTGACTTCTCCAGAGTTTAG
AGCCACGGCCAAAAAGTGTGTCGGTTTCATTTTTTTTCGTAAAGAGGCTA
CAAGATGGTGGATTTGTCGCAGTGCAGCGCATACTTGACTGCGTTGCTTG
GCCTTGATAGTCACTTCGTTTGACCTATCGTTCGGACGCGGAACAAAGAT
CTCTGTACGGGTCTCTTCCTCTATGCGGCGCTTCGTAGATCCTTTCATGC
CAATTAGTCCACCGTAAAATGATTTGGACACATGAATGGAAAGACTAAAA
TCGCCATTTGCTGACTCCTTATACATTTGACAACCGCATCGTCCTCGTCA
TCATCATCATCACCATAAAGATCCGGCT

BO05894.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-PA 1059 CG12129-RA 204..1056 871..19 4265 100 Minus
CG12129-PA 1059 CG12129-RA 146..203 928..871 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1239 CG12129-RA 243..1153 928..19 4530 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10034071..10034612 560..19 2710 100 Minus
2R 25286936 2R 10033757..10034021 823..559 1325 100 Minus
2R 25286936 2R 10033603..10033703 923..824 455 99 Minus
Blast to na_te.dros performed on 2015-02-11 16:04:18 has no hits.

BO05894.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:13 Download gff for BO05894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 146..1059 15..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:52 Download gff for BO05894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 146..1059 15..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:35 Download gff for BO05894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 243..1157 14..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:21 Download gff for BO05894.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 243..1157 14..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:21 Download gff for BO05894.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10033597..10033703 824..928 96 -> Minus
2R 10033757..10034021 559..823 100 -> Minus
2R 10034073..10034616 14..558 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:35 Download gff for BO05894.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5921102..5921208 824..928 96 -> Minus
arm_2R 5921262..5921526 559..823 100 -> Minus
arm_2R 5921578..5922121 14..558 99   Minus

BO05894.5prime Sequence

895 bp (719 high quality bases) assembled on 2005-11-29

> BO05894.5prime
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATG

BO05894.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-PA 1059 CG12129-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1239 CG12129-RA 97..976 16..895 4400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10034071..10034435 531..895 1825 100 Plus
2R 25286936 2R 10033757..10034021 268..532 1325 100 Plus
2R 25286936 2R 10033400..10033551 16..167 760 100 Plus
2R 25286936 2R 10033603..10033703 167..267 505 100 Plus
Blast to na_te.dros performed 2015-02-12 16:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1429..1526 15..111 118 60.6 Plus

BO05894.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:14 Download gff for BO05894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:53 Download gff for BO05894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:38 Download gff for BO05894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 92..976 7..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:13 Download gff for BO05894.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 92..976 7..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:13 Download gff for BO05894.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10033604..10033703 168..267 100 -> Plus
2R 10033757..10034021 268..532 100 -> Plus
2R 10033395..10033551 11..167 98 -> Plus
2R 10034073..10034435 533..895 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:38 Download gff for BO05894.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5920900..5921056 11..167 98 -> Plus
arm_2R 5921109..5921208 168..267 100 -> Plus
arm_2R 5921262..5921526 268..532 100 -> Plus
arm_2R 5921578..5921940 533..895 100   Plus

BO05894.complete Sequence

1090 bp (1090 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630195

> BO05894.complete
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATGAACAA
CCGCTACCGCAATAAGGCAAATAAATCTGGTAACAGCTTTGACGCTCGCG
AGATCCTCAAGCGCTTTGGAGACTTCGATTTCGGAGTAGCCCAGTGCCAG
GCTGTACATCTGTGCGTATTGAATTCGCGCTCCGAGGATGAGTTCTATAA
GATAAGCGGTAGTCTCGAATTCGCAAGCTTTCTAGACCAT

BO05894.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1059 CG12129-PA 1..1056 17..1072 5280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-RA 1239 CG12129-RA 97..1153 16..1072 5285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10034071..10034612 531..1072 2710 100 Plus
2R 25286936 2R 10033757..10034021 268..532 1325 100 Plus
2R 25286936 2R 10033400..10033551 16..167 760 100 Plus
2R 25286936 2R 10033603..10033703 167..267 505 100 Plus
Blast to na_te.dros performed 2014-11-27 13:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
G3 4605 G3 G3 4605bp 1429..1526 15..111 118 60.6 Plus

BO05894.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:55 Download gff for BO05894.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 1..1059 17..1076 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:05 Download gff for BO05894.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 102..1167 7..1077 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:33 Download gff for BO05894.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 98..1153 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:55 Download gff for BO05894.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 102..1167 7..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:49 Download gff for BO05894.complete
Subject Subject Range Query Range Percent Splice Strand
CG12129-RA 98..1153 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:49 Download gff for BO05894.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10033401..10033551 17..167 100 -> Plus
2R 10033604..10033703 168..267 100 -> Plus
2R 10033757..10034021 268..532 100 -> Plus
2R 10034073..10034612 533..1074 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:33 Download gff for BO05894.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5920906..5921056 17..167 100 -> Plus
arm_2R 5921109..5921208 168..267 100 -> Plus
arm_2R 5921262..5921526 268..532 100 -> Plus
arm_2R 5921578..5922117 533..1074 99   Plus

BO05894.pep Sequence

Translation from 16 to 1090

> BO05894.pep
MSREVLSPPVQKMSQNRRYRVNVVHDDFGGDKWNGQNQRNKLEYKAYEEP
DLYGDDDDDEDDAVVKCIKESANGDFSLSIHVSKSFYGGLIGMKGSTKRR
IEEETRTEIFVPRPNDRSNEVTIKAKQRSQVCAALRQIHHLVASLRKKMK
PTHFLAVALNSGEVKERFMELKKCILEAELPGIDKELFTPECCIHLTLGV
YVLLDDIERQEALKNLESCRRLLDGLKIPFQIKVKGLEIMNDDPSSTRIL
YARIESPDLQKFADQCLAHFQTTALCATDNIERESIKLHMTVMNNRYRNK
ANKSGNSFDAREILKRFGDFDFGVAQCQAVHLCVLNSRSEDEFYKISGSL
EFASFLDH

BO05894.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12129-PA 352 CG12129-PA 1..352 1..352 1833 100 Plus