Clone Sequence Records
BO05894.3prime Sequence
928 bp (741 high quality bases) assembled on 2005-12-02
> BO05894.3prime
ATGGTCTAGAAAGCTTGCGAATTCGAGACTACCGCTTATCTTATAGAACT
CATCCTCGGAGCGCGAATTCAATACGCACAGATGTACAGCCTGGCACTGG
GCTACTCCGAAATCGAAGTCTCCAAAGCGCTTGAGGATCTCGCGAGCGTC
AAAGCTGTTACCAGATTTATTTGCCTTATTGCGGTAGCGGTTGTTCATCA
CCGTCATGTGCAGTTTAATGGATTCACGTTCAATATTGTCTGTAGCGCAC
AGTGCTGTAGTCTGAAAGTGGGCCAGACACTGATCCGCAAACTTTTGCAG
ATCCGGAGACTCGATGCGGGCATACAGAATGCGAGTGGAGCTTGGATCGT
CGTTCATAATCTCCAGGCCCTTAACTTTAATTTGGAAAGGTATTTTAAGG
CCATCCAGTAAACGACGACATGATTCCAGATTCTTCAGGGCTTCTTGGCG
TTCAATGTCATCTAGCAGCACATAGACGCCTAAGGTAAGATGAATGCAGC
ACTCCGGAGTGAAAAGCTCCTTATCGATGCCTGGCAACTCGGCCTCCAAA
ATGCATTTCTTTAGTTCCATAAAACGCTCCTTGACTTCTCCAGAGTTTAG
AGCCACGGCCAAAAAGTGTGTCGGTTTCATTTTTTTTCGTAAAGAGGCTA
CAAGATGGTGGATTTGTCGCAGTGCAGCGCATACTTGACTGCGTTGCTTG
GCCTTGATAGTCACTTCGTTTGACCTATCGTTCGGACGCGGAACAAAGAT
CTCTGTACGGGTCTCTTCCTCTATGCGGCGCTTCGTAGATCCTTTCATGC
CAATTAGTCCACCGTAAAATGATTTGGACACATGAATGGAAAGACTAAAA
TCGCCATTTGCTGACTCCTTATACATTTGACAACCGCATCGTCCTCGTCA
TCATCATCATCACCATAAAGATCCGGCT
BO05894.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-PA | 1059 | CG12129-RA | 204..1056 | 871..19 | 4265 | 100 | Minus |
CG12129-PA | 1059 | CG12129-RA | 146..203 | 928..871 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1239 | CG12129-RA | 243..1153 | 928..19 | 4530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10034071..10034612 | 560..19 | 2710 | 100 | Minus |
2R | 25286936 | 2R | 10033757..10034021 | 823..559 | 1325 | 100 | Minus |
2R | 25286936 | 2R | 10033603..10033703 | 923..824 | 455 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:04:18 has no hits.
BO05894.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:13 Download gff for
BO05894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 146..1059 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:52 Download gff for
BO05894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 146..1059 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:35 Download gff for
BO05894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 243..1157 | 14..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:21 Download gff for
BO05894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 243..1157 | 14..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:21 Download gff for
BO05894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10033597..10033703 | 824..928 | 96 | -> | Minus |
2R | 10033757..10034021 | 559..823 | 100 | -> | Minus |
2R | 10034073..10034616 | 14..558 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:35 Download gff for
BO05894.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5921102..5921208 | 824..928 | 96 | -> | Minus |
arm_2R | 5921262..5921526 | 559..823 | 100 | -> | Minus |
arm_2R | 5921578..5922121 | 14..558 | 99 | | Minus |
BO05894.5prime Sequence
895 bp (719 high quality bases) assembled on 2005-11-29
> BO05894.5prime
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATG
BO05894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-PA | 1059 | CG12129-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1239 | CG12129-RA | 97..976 | 16..895 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:04:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10034071..10034435 | 531..895 | 1825 | 100 | Plus |
2R | 25286936 | 2R | 10033757..10034021 | 268..532 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 10033400..10033551 | 16..167 | 760 | 100 | Plus |
2R | 25286936 | 2R | 10033603..10033703 | 167..267 | 505 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 16:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1429..1526 | 15..111 | 118 | 60.6 | Plus |
BO05894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:14 Download gff for
BO05894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:53 Download gff for
BO05894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:38 Download gff for
BO05894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 92..976 | 7..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:13 Download gff for
BO05894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 92..976 | 7..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:13 Download gff for
BO05894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10033604..10033703 | 168..267 | 100 | -> | Plus |
2R | 10033757..10034021 | 268..532 | 100 | -> | Plus |
2R | 10033395..10033551 | 11..167 | 98 | -> | Plus |
2R | 10034073..10034435 | 533..895 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:38 Download gff for
BO05894.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5920900..5921056 | 11..167 | 98 | -> | Plus |
arm_2R | 5921109..5921208 | 168..267 | 100 | -> | Plus |
arm_2R | 5921262..5921526 | 268..532 | 100 | -> | Plus |
arm_2R | 5921578..5921940 | 533..895 | 100 | | Plus |
BO05894.complete Sequence
1090 bp (1090 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630195
> BO05894.complete
GAAGTTATCAGTCGACATGAGCCGCGAAGTGTTATCACCTCCTGTCCAAA
AGATGAGCCAGAATCGGCGCTATAGAGTCAACGTTGTTCACGACGACTTC
GGTGGCGACAAGTGGAATGGTCAAAACCAACGGAATAAACTAGAGTACAA
AGCCTACGAAGAGCCGGATCTTTATGGTGATGATGATGATGACGAGGACG
ATGCGGTTGTCAAATGTATTAAGGAGTCAGCAAATGGCGATTTTAGTCTT
TCCATTCATGTGTCCAAATCATTTTACGGTGGACTAATTGGCATGAAAGG
ATCTACGAAGCGCCGCATAGAGGAAGAGACCCGTACAGAGATCTTTGTTC
CGCGTCCGAACGATAGGTCAAACGAAGTGACTATCAAGGCCAAGCAACGC
AGTCAAGTATGCGCTGCACTGCGACAAATCCACCATCTTGTAGCCTCTTT
ACGAAAAAAAATGAAACCGACACACTTTTTGGCCGTGGCTCTAAACTCTG
GAGAAGTCAAGGAGCGTTTTATGGAACTAAAGAAATGCATTTTGGAGGCC
GAGTTGCCAGGCATCGATAAGGAGCTTTTCACTCCGGAGTGCTGCATTCA
TCTTACCTTAGGCGTCTATGTGCTGCTAGATGACATTGAACGCCAAGAAG
CCCTGAAGAATCTGGAATCATGTCGTCGTTTACTGGATGGCCTTAAAATA
CCTTTCCAAATTAAAGTTAAGGGCCTGGAGATTATGAACGACGATCCAAG
CTCCACTCGCATTCTGTATGCCCGCATCGAGTCTCCGGATCTGCAAAAGT
TTGCGGATCAGTGTCTGGCCCACTTTCAGACTACAGCACTGTGCGCTACA
GACAATATTGAACGTGAATCCATTAAACTGCACATGACGGTGATGAACAA
CCGCTACCGCAATAAGGCAAATAAATCTGGTAACAGCTTTGACGCTCGCG
AGATCCTCAAGCGCTTTGGAGACTTCGATTTCGGAGTAGCCCAGTGCCAG
GCTGTACATCTGTGCGTATTGAATTCGCGCTCCGAGGATGAGTTCTATAA
GATAAGCGGTAGTCTCGAATTCGCAAGCTTTCTAGACCAT
BO05894.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1059 | CG12129-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-RA | 1239 | CG12129-RA | 97..1153 | 16..1072 | 5285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10034071..10034612 | 531..1072 | 2710 | 100 | Plus |
2R | 25286936 | 2R | 10033757..10034021 | 268..532 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 10033400..10033551 | 16..167 | 760 | 100 | Plus |
2R | 25286936 | 2R | 10033603..10033703 | 167..267 | 505 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G3 | 4605 | G3 G3 4605bp | 1429..1526 | 15..111 | 118 | 60.6 | Plus |
BO05894.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:55 Download gff for
BO05894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 1..1059 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:05 Download gff for
BO05894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 102..1167 | 7..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:33 Download gff for
BO05894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 98..1153 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:55 Download gff for
BO05894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 102..1167 | 7..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:49 Download gff for
BO05894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12129-RA | 98..1153 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:49 Download gff for
BO05894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10033401..10033551 | 17..167 | 100 | -> | Plus |
2R | 10033604..10033703 | 168..267 | 100 | -> | Plus |
2R | 10033757..10034021 | 268..532 | 100 | -> | Plus |
2R | 10034073..10034612 | 533..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:33 Download gff for
BO05894.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5920906..5921056 | 17..167 | 100 | -> | Plus |
arm_2R | 5921109..5921208 | 168..267 | 100 | -> | Plus |
arm_2R | 5921262..5921526 | 268..532 | 100 | -> | Plus |
arm_2R | 5921578..5922117 | 533..1074 | 99 | | Plus |
BO05894.pep Sequence
Translation from 16 to 1090
> BO05894.pep
MSREVLSPPVQKMSQNRRYRVNVVHDDFGGDKWNGQNQRNKLEYKAYEEP
DLYGDDDDDEDDAVVKCIKESANGDFSLSIHVSKSFYGGLIGMKGSTKRR
IEEETRTEIFVPRPNDRSNEVTIKAKQRSQVCAALRQIHHLVASLRKKMK
PTHFLAVALNSGEVKERFMELKKCILEAELPGIDKELFTPECCIHLTLGV
YVLLDDIERQEALKNLESCRRLLDGLKIPFQIKVKGLEIMNDDPSSTRIL
YARIESPDLQKFADQCLAHFQTTALCATDNIERESIKLHMTVMNNRYRNK
ANKSGNSFDAREILKRFGDFDFGVAQCQAVHLCVLNSRSEDEFYKISGSL
EFASFLDH
BO05894.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12129-PA | 352 | CG12129-PA | 1..352 | 1..352 | 1833 | 100 | Plus |