Clone Sequence Records
BO05895.3prime Sequence
455 bp (454 high quality bases) assembled on 2005-12-02
> BO05895.3prime
ATGGTCTAGAAAGCTTGCGTAGGCCTGCGACAGAATGACGTTGCCCTTCC
GCTGCGGATCCTGCACCGTTTCCTCCTTTTTGCCGATCAGCGACTTGTGT
ATGTGCGGAATGACACCGCCACCAGCGATGGTTGCCTTGATCAGGCTGTC
CAGCTCCTCGTCTCCGCGAATGGCGAGCTGTAAGTGGCGAGGAGTGATAC
GTTTCACTTTCAAGTCCTTCGATGCGTTGCCTGCCAACTCCAGGACCTCG
GCGGTCAGGTATTCCAATATGGCAGCGGAGTACACGGCTGCAGTGGCTCC
GACGCGTCCATGTGACGTAGTGCGGCTCTTGAGATGACGATGGATGCGAC
CCACGGGGAACTGAAGACCCGCGCGCGCGGAACGCGATACCGCCTTCGCC
TTGGCCTTGCCCGAATCCTTGCCTGCTTTACCGCCAGCCATGTCGACTGA
TAACT
BO05895.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5499-PA | 426 | His2Av-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 1169 | CG5499-RB | 165..587 | 441..19 | 2115 | 100 | Minus |
His2Av-RA | 912 | CG5499-RA | 165..587 | 441..19 | 2115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26868354..26868583 | 248..19 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 26867666..26867784 | 363..245 | 595 | 100 | Minus |
3R | 32079331 | 3R | 26867408..26867486 | 439..361 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:55:10 has no hits.
BO05895.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:15 Download gff for
BO05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:55 Download gff for
BO05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:57 Download gff for
BO05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 13..449 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:38 Download gff for
BO05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 13..449 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:38 Download gff for
BO05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26867403..26867486 | 361..446 | 97 | -> | Minus |
3R | 26867669..26867782 | 247..360 | 100 | -> | Minus |
3R | 26868356..26868588 | 13..246 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:57 Download gff for
BO05895.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22693125..22693208 | 361..446 | 97 | -> | Minus |
arm_3R | 22693391..22693504 | 247..360 | 100 | -> | Minus |
arm_3R | 22694078..22694310 | 13..246 | 99 | | Minus |
BO05895.5prime Sequence
455 bp (454 high quality bases) assembled on 2005-11-29
> BO05895.5prime
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACGCAAGCTTTCT
AGACC
BO05895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5499-PA | 426 | His2Av-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 1169 | CG5499-RB | 165..587 | 17..439 | 2115 | 100 | Plus |
His2Av-RA | 912 | CG5499-RA | 165..587 | 17..439 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26868354..26868583 | 210..439 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 26867666..26867784 | 95..213 | 595 | 100 | Plus |
3R | 32079331 | 3R | 26867408..26867486 | 19..97 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:45:27 has no hits.
BO05895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:16 Download gff for
BO05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:56 Download gff for
BO05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5499-PA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:35 Download gff for
BO05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 9..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:26:20 Download gff for
BO05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 160..592 | 9..445 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:26:20 Download gff for
BO05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26867403..26867486 | 12..97 | 97 | -> | Plus |
3R | 26867669..26867782 | 98..211 | 100 | -> | Plus |
3R | 26868356..26868588 | 212..445 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:35 Download gff for
BO05895.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22693125..22693208 | 12..97 | 97 | -> | Plus |
arm_3R | 22693391..22693504 | 98..211 | 100 | -> | Plus |
arm_3R | 22694078..22694310 | 212..445 | 99 | | Plus |
BO05895.complete Sequence
457 bp (457 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630196
> BO05895.complete
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACGCAAGCTTTCT
AGACCAT
BO05895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 426 | CG5499-PB | 1..423 | 17..439 | 2115 | 100 | Plus |
His2Av-RA | 426 | CG5499-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-RB | 1169 | CG5499-RB | 165..587 | 17..439 | 2115 | 100 | Plus |
His2Av-RA | 912 | CG5499-RA | 165..587 | 17..439 | 2115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26868354..26868583 | 210..439 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 26867666..26867784 | 95..213 | 595 | 100 | Plus |
3R | 32079331 | 3R | 26867408..26867486 | 19..97 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:35:00 has no hits.
BO05895.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:56 Download gff for
BO05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:17 Download gff for
BO05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 158..590 | 9..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:46 Download gff for
BO05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 165..587 | 17..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:56 Download gff for
BO05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 158..590 | 9..445 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:32 Download gff for
BO05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His2Av-RA | 165..587 | 17..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:32 Download gff for
BO05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26867407..26867486 | 17..97 | 98 | -> | Plus |
3R | 26867669..26867782 | 98..211 | 100 | -> | Plus |
3R | 26868356..26868583 | 212..441 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:46 Download gff for
BO05895.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22693129..22693208 | 17..97 | 98 | -> | Plus |
arm_3R | 22693391..22693504 | 98..211 | 100 | -> | Plus |
arm_3R | 22694078..22694305 | 212..441 | 99 | | Plus |
BO05895.pep Sequence
Translation from 16 to 457
> BO05895.pep
MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT
AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL
IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAYASFLDH
BO05895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His2Av-PB | 141 | CG5499-PB | 1..141 | 1..141 | 699 | 100 | Plus |
His2Av-PA | 141 | CG5499-PA | 1..141 | 1..141 | 699 | 100 | Plus |
His2A:CG33865-PA | 124 | CG33865-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33862-PA | 124 | CG33862-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |
His2A:CG33859-PA | 124 | CG33859-PA | 5..121 | 4..124 | 329 | 63.1 | Plus |