Clone BO05895 Report

Search the DGRC for BO05895

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptHis2Av-RA
Protein status:BO05895.pep: validated full length
Sequenced Size:457

Clone Sequence Records

BO05895.3prime Sequence

455 bp (454 high quality bases) assembled on 2005-12-02

> BO05895.3prime
ATGGTCTAGAAAGCTTGCGTAGGCCTGCGACAGAATGACGTTGCCCTTCC
GCTGCGGATCCTGCACCGTTTCCTCCTTTTTGCCGATCAGCGACTTGTGT
ATGTGCGGAATGACACCGCCACCAGCGATGGTTGCCTTGATCAGGCTGTC
CAGCTCCTCGTCTCCGCGAATGGCGAGCTGTAAGTGGCGAGGAGTGATAC
GTTTCACTTTCAAGTCCTTCGATGCGTTGCCTGCCAACTCCAGGACCTCG
GCGGTCAGGTATTCCAATATGGCAGCGGAGTACACGGCTGCAGTGGCTCC
GACGCGTCCATGTGACGTAGTGCGGCTCTTGAGATGACGATGGATGCGAC
CCACGGGGAACTGAAGACCCGCGCGCGCGGAACGCGATACCGCCTTCGCC
TTGGCCTTGCCCGAATCCTTGCCTGCTTTACCGCCAGCCATGTCGACTGA
TAACT

BO05895.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5499-PA 426 His2Av-RA 1..423 441..19 2115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 1169 CG5499-RB 165..587 441..19 2115 100 Minus
His2Av-RA 912 CG5499-RA 165..587 441..19 2115 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26868354..26868583 248..19 1150 100 Minus
3R 32079331 3R 26867666..26867784 363..245 595 100 Minus
3R 32079331 3R 26867408..26867486 439..361 395 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:55:10 has no hits.

BO05895.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:15 Download gff for BO05895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 15..441 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:55 Download gff for BO05895.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 15..441 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:57 Download gff for BO05895.3prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 13..449 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:38 Download gff for BO05895.3prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 13..449 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:38 Download gff for BO05895.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26867403..26867486 361..446 97 -> Minus
3R 26867669..26867782 247..360 100 -> Minus
3R 26868356..26868588 13..246 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:57 Download gff for BO05895.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22693125..22693208 361..446 97 -> Minus
arm_3R 22693391..22693504 247..360 100 -> Minus
arm_3R 22694078..22694310 13..246 99   Minus

BO05895.5prime Sequence

455 bp (454 high quality bases) assembled on 2005-11-29

> BO05895.5prime
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACGCAAGCTTTCT
AGACC

BO05895.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5499-PA 426 His2Av-RA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 1169 CG5499-RB 165..587 17..439 2115 100 Plus
His2Av-RA 912 CG5499-RA 165..587 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26868354..26868583 210..439 1150 100 Plus
3R 32079331 3R 26867666..26867784 95..213 595 100 Plus
3R 32079331 3R 26867408..26867486 19..97 395 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:45:27 has no hits.

BO05895.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:16 Download gff for BO05895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 17..443 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:56 Download gff for BO05895.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5499-PA 1..426 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:35 Download gff for BO05895.5prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 9..445 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:26:20 Download gff for BO05895.5prime
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 160..592 9..445 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:26:20 Download gff for BO05895.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26867403..26867486 12..97 97 -> Plus
3R 26867669..26867782 98..211 100 -> Plus
3R 26868356..26868588 212..445 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:35 Download gff for BO05895.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22693125..22693208 12..97 97 -> Plus
arm_3R 22693391..22693504 98..211 100 -> Plus
arm_3R 22694078..22694310 212..445 99   Plus

BO05895.complete Sequence

457 bp (457 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630196

> BO05895.complete
GAAGTTATCAGTCGACATGGCTGGCGGTAAAGCAGGCAAGGATTCGGGCA
AGGCCAAGGCGAAGGCGGTATCGCGTTCCGCGCGCGCGGGTCTTCAGTTC
CCCGTGGGTCGCATCCATCGTCATCTCAAGAGCCGCACTACGTCACATGG
ACGCGTCGGAGCCACTGCAGCCGTGTACTCCGCTGCCATATTGGAATACC
TGACCGCCGAGGTCCTGGAGTTGGCAGGCAACGCATCGAAGGACTTGAAA
GTGAAACGTATCACTCCTCGCCACTTACAGCTCGCCATTCGCGGAGACGA
GGAGCTGGACAGCCTGATCAAGGCAACCATCGCTGGTGGCGGTGTCATTC
CGCACATACACAAGTCGCTGATCGGCAAAAAGGAGGAAACGGTGCAGGAT
CCGCAGCGGAAGGGCAACGTCATTCTGTCGCAGGCCTACGCAAGCTTTCT
AGACCAT

BO05895.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 426 CG5499-PB 1..423 17..439 2115 100 Plus
His2Av-RA 426 CG5499-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-RB 1169 CG5499-RB 165..587 17..439 2115 100 Plus
His2Av-RA 912 CG5499-RA 165..587 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26868354..26868583 210..439 1150 100 Plus
3R 32079331 3R 26867666..26867784 95..213 595 100 Plus
3R 32079331 3R 26867408..26867486 19..97 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:35:00 has no hits.

BO05895.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:56 Download gff for BO05895.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 1..426 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:05:17 Download gff for BO05895.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 158..590 9..445 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:46 Download gff for BO05895.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 165..587 17..441 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:56 Download gff for BO05895.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 158..590 9..445 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:32 Download gff for BO05895.complete
Subject Subject Range Query Range Percent Splice Strand
His2Av-RA 165..587 17..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:32 Download gff for BO05895.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26867407..26867486 17..97 98 -> Plus
3R 26867669..26867782 98..211 100 -> Plus
3R 26868356..26868583 212..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:46 Download gff for BO05895.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22693129..22693208 17..97 98 -> Plus
arm_3R 22693391..22693504 98..211 100 -> Plus
arm_3R 22694078..22694305 212..441 99   Plus

BO05895.pep Sequence

Translation from 16 to 457

> BO05895.pep
MAGGKAGKDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGAT
AAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSL
IKATIAGGGVIPHIHKSLIGKKEETVQDPQRKGNVILSQAYASFLDH

BO05895.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
His2Av-PB 141 CG5499-PB 1..141 1..141 699 100 Plus
His2Av-PA 141 CG5499-PA 1..141 1..141 699 100 Plus
His2A:CG33865-PA 124 CG33865-PA 5..121 4..124 329 63.1 Plus
His2A:CG33862-PA 124 CG33862-PA 5..121 4..124 329 63.1 Plus
His2A:CG33859-PA 124 CG33859-PA 5..121 4..124 329 63.1 Plus