Clone BO05896 Report

Search the DGRC for BO05896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:58
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptNap1-RA
Protein status:BO05896.pep: validated full length
Sequenced Size:1144

Clone Sequence Records

BO05896.3prime Sequence

847 bp (685 high quality bases) assembled on 2005-12-02

> BO05896.3prime
ATGGTCTAGAAAGCTTGCCTGATTCGGGCAGTCGTTGGGCGACTGCTTCT
TGATACCGGCTGATTTGGGGCCCTTTGGTGGCGGTGCATCGTCGTCGTCG
TACTCATCCTCCTCGTTCTCGTCATACTCCTCTTCGTCCTCATCGTCCTC
ATCGTCGACGATGTCGCCAGTGTAGTAAAGCACTGCTTTTGGAATAATTC
TGGCGCGCAAGAAGTGACCAATTTCGAAGTCGGTGGCCAGGATCTGCTGG
GAGTCGTCGTCGACTTCCTCCTGGTCGCTCGGGACCTCTGGTGGGCTGAA
GAAATTGAAGAAGGAATCCGTCGGAACCTGCTTCACAATGGTGCGCACTG
CGCCGCGCTCCTTGTGCTTCTGCTTCTTGCGGATGGTCTTCACAGTAAGG
TTCATCTTCTTCTCCCAGTTAATGGTGCACCCCGTGCACTTGTAGATCTC
TGGGCCTTCAAATGCGAACGGATCGTTGGGATCCACGGTGGACTTCAAAA
CGTACTGCTTTGTGAGAACTGAGTTGGAGAAGTACTCGTTCTTGTCGAAG
TGAAACTCCAAGGTGTACGAATGCCCGTTGTCGTACTTGATGGAAATATC
GATTAGCTTGCGGATGGCGGGCTCGTCGTGCGGCTGCACCATCTCAGACA
TTATGGCCGTGTTGCGGAACACCGTCAGCCAGAAGCCGGGGATGCCCTTG
GCATCCTTGGGAATACTTTTCAAACTGCTCAGGGCCTCGCGGAAGTGCTC
GGCATCGGCCTCGTTGTCGGTCGACGACTCCGGTTCCTTCCACTGGGGCT
TCTCCTCGGCGGGGTCCACCTTGCCCTCGATGATCTCCCTGCGCTTA

BO05896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5330-PA 1113 Nap1-RA 282..1110 847..19 4120 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1376 CG5330-RC 406..1234 847..19 4130 99.9 Minus
Nap1-RB 1393 CG5330-RB 423..1251 847..19 4130 99.9 Minus
Nap1-RA 1361 CG5330-RA 391..1219 847..19 4130 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23906060..23906333 574..847 1355 99.6 Plus
2R 25286936 2R 23905317..23905545 19..247 1145 100 Plus
2R 25286936 2R 23905605..23905794 244..433 950 100 Plus
2R 25286936 2R 23905855..23905997 432..574 715 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:45:47 has no hits.

BO05896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:17 Download gff for BO05896.3prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-PA 283..1113 18..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:57 Download gff for BO05896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5330-PA 283..1113 18..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:36 Download gff for BO05896.3prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 392..1225 11..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:27:37 Download gff for BO05896.3prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 392..1225 11..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:27:37 Download gff for BO05896.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23905311..23905541 11..243 98 <- Plus
2R 23905605..23905793 244..432 100 <- Plus
2R 23905856..23905996 433..573 100 <- Plus
2R 23906060..23906332 574..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:36 Download gff for BO05896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19792834..19793064 11..243 98 <- Plus
arm_2R 19793128..19793316 244..432 100 <- Plus
arm_2R 19793379..19793519 433..573 100 <- Plus
arm_2R 19793583..19793855 574..846 99   Plus

BO05896.5prime Sequence

882 bp (685 high quality bases) assembled on 2005-11-29

> BO05896.5prime
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGAGAAGAAGATGACCCTTAC
TGTGAAGACCATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGC
GCACCATTGTGAAGCAGGTTCCGACGGATTCCTTCTTTCATTTCTTCAGC
CCACCAGAGGTCCCGAGCGACCAGGAGGAAGT

BO05896.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5330-PA 1113 Nap1-RA 1..866 17..882 4255 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1376 CG5330-RC 125..990 17..882 4285 99.7 Plus
Nap1-RB 1393 CG5330-RB 142..1007 17..882 4285 99.7 Plus
Nap1-RA 1361 CG5330-RA 110..975 17..882 4285 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23906060..23906528 571..103 2345 100 Minus
2R 25286936 2R 23905624..23905794 882..712 810 98.2 Minus
2R 25286936 2R 23905855..23905997 713..571 715 100 Minus
2R 25286936 2R 23906614..23906700 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:55:21 has no hits.

BO05896.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:18 Download gff for BO05896.5prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:59 Download gff for BO05896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5330-PA 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:00 Download gff for BO05896.5prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..975 17..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:45 Download gff for BO05896.5prime
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..975 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:45 Download gff for BO05896.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23905624..23905793 713..882 98 <- Minus
2R 23905856..23905996 572..712 100 <- Minus
2R 23906060..23906528 103..571 100 <- Minus
2R 23906615..23906700 17..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:00 Download gff for BO05896.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19793147..19793316 713..882 98 <- Minus
arm_2R 19793379..19793519 572..712 100 <- Minus
arm_2R 19793583..19794051 103..571 100 <- Minus
arm_2R 19794138..19794223 17..102 100   Minus

BO05896.complete Sequence

1144 bp (1144 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630197

> BO05896.complete
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGAGAAGAAGATGAACCTTAC
TGTGAAGACCATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGC
GCACCATTGTGAAGCAGGTTCCGACGGATTCCTTCTTCAATTTCTTCAGC
CCACCAGAGGTCCCGAGCGACCAGGAGGAAGTCGACGACGACTCCCAGCA
GATCCTGGCCACCGACTTCGAAATTGGTCACTTCTTGCGCGCCAGAATTA
TTCCAAAAGCAGTGCTTTACTACACTGGCGACATCGTCGACGATGAGGAC
GATGAGGACGAAGAGGAGTATGACGAGAACGAGGAGGATGAGTACGACGA
CGACGATGCACCGCCACCAAAGGGCCCCAAATCAGCCGGTATCAAGAAGC
AGTCGCCCAACGACTGCCCGAATCAGGCAAGCTTTCTAGACCAT

BO05896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1113 CG5330-PC 1..1110 17..1126 5550 100 Plus
Nap1-RB 1113 CG5330-PB 1..1110 17..1126 5550 100 Plus
Nap1-RA 1113 CG5330-PA 1..1110 17..1126 5550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-RC 1376 CG5330-RC 125..1234 17..1126 5550 100 Plus
Nap1-RB 1393 CG5330-RB 142..1251 17..1126 5550 100 Plus
Nap1-RA 1361 CG5330-RA 110..1219 17..1126 5550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23906060..23906528 571..103 2345 100 Minus
2R 25286936 2R 23905317..23905545 1126..898 1145 100 Minus
2R 25286936 2R 23905605..23905794 901..712 950 100 Minus
2R 25286936 2R 23905855..23905997 713..571 715 100 Minus
2R 25286936 2R 23906614..23906700 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:33:54 has no hits.

BO05896.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:57 Download gff for BO05896.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 1..1113 17..1127 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:07 Download gff for BO05896.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 130..1245 17..1134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:59 Download gff for BO05896.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..1219 17..1128 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:57 Download gff for BO05896.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 130..1245 17..1134 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:11 Download gff for BO05896.complete
Subject Subject Range Query Range Percent Splice Strand
Nap1-RA 110..1219 17..1128 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:11 Download gff for BO05896.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23905315..23905541 902..1128 99 <- Minus
2R 23905605..23905793 713..901 100 <- Minus
2R 23905856..23905996 572..712 100 <- Minus
2R 23906060..23906528 103..571 100 <- Minus
2R 23906615..23906700 17..102 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:59 Download gff for BO05896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19793128..19793316 713..901 100 <- Minus
arm_2R 19793379..19793519 572..712 100 <- Minus
arm_2R 19792838..19793064 902..1128 99 <- Minus
arm_2R 19793583..19794051 103..571 100 <- Minus
arm_2R 19794138..19794223 17..102 100   Minus

BO05896.pep Sequence

Translation from 16 to 1144

> BO05896.pep
MDAPAEGHVDPESCNEIEDEKSGSDCQSMPAYMNSVMRRQYLQQMVKMLP
APVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFDKRREII
EGKVDPAEEKPQWKEPESSTDNEADAEHFREALSSLKSIPKDAKGIPGFW
LTVFRNTAIMSEMVQPHDEPAIRKLIDISIKYDNGHSYTLEFHFDKNEYF
SNSVLTKQYVLKSTVDPNDPFAFEGPEIYKCTGCTINWEKKMNLTVKTIR
KKQKHKERGAVRTIVKQVPTDSFFNFFSPPEVPSDQEEVDDDSQQILATD
FEIGHFLRARIIPKAVLYYTGDIVDDEDDEDEEEYDENEEDEYDDDDAPP
PKGPKSAGIKKQSPNDCPNQASFLDH

BO05896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Nap1-PC 370 CG5330-PC 1..370 1..370 1974 100 Plus
Nap1-PB 370 CG5330-PB 1..370 1..370 1974 100 Plus
Nap1-PA 370 CG5330-PA 1..370 1..370 1974 100 Plus
CG3708-PB 362 CG3708-PB 46..340 30..325 602 40.9 Plus
mil-PA 283 CG5017-PA 37..277 60..347 425 33.7 Plus