Clone Sequence Records
BO05896.3prime Sequence
847 bp (685 high quality bases) assembled on 2005-12-02
> BO05896.3prime
ATGGTCTAGAAAGCTTGCCTGATTCGGGCAGTCGTTGGGCGACTGCTTCT
TGATACCGGCTGATTTGGGGCCCTTTGGTGGCGGTGCATCGTCGTCGTCG
TACTCATCCTCCTCGTTCTCGTCATACTCCTCTTCGTCCTCATCGTCCTC
ATCGTCGACGATGTCGCCAGTGTAGTAAAGCACTGCTTTTGGAATAATTC
TGGCGCGCAAGAAGTGACCAATTTCGAAGTCGGTGGCCAGGATCTGCTGG
GAGTCGTCGTCGACTTCCTCCTGGTCGCTCGGGACCTCTGGTGGGCTGAA
GAAATTGAAGAAGGAATCCGTCGGAACCTGCTTCACAATGGTGCGCACTG
CGCCGCGCTCCTTGTGCTTCTGCTTCTTGCGGATGGTCTTCACAGTAAGG
TTCATCTTCTTCTCCCAGTTAATGGTGCACCCCGTGCACTTGTAGATCTC
TGGGCCTTCAAATGCGAACGGATCGTTGGGATCCACGGTGGACTTCAAAA
CGTACTGCTTTGTGAGAACTGAGTTGGAGAAGTACTCGTTCTTGTCGAAG
TGAAACTCCAAGGTGTACGAATGCCCGTTGTCGTACTTGATGGAAATATC
GATTAGCTTGCGGATGGCGGGCTCGTCGTGCGGCTGCACCATCTCAGACA
TTATGGCCGTGTTGCGGAACACCGTCAGCCAGAAGCCGGGGATGCCCTTG
GCATCCTTGGGAATACTTTTCAAACTGCTCAGGGCCTCGCGGAAGTGCTC
GGCATCGGCCTCGTTGTCGGTCGACGACTCCGGTTCCTTCCACTGGGGCT
TCTCCTCGGCGGGGTCCACCTTGCCCTCGATGATCTCCCTGCGCTTA
BO05896.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5330-PA | 1113 | Nap1-RA | 282..1110 | 847..19 | 4120 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1376 | CG5330-RC | 406..1234 | 847..19 | 4130 | 99.9 | Minus |
Nap1-RB | 1393 | CG5330-RB | 423..1251 | 847..19 | 4130 | 99.9 | Minus |
Nap1-RA | 1361 | CG5330-RA | 391..1219 | 847..19 | 4130 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:45:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23906060..23906333 | 574..847 | 1355 | 99.6 | Plus |
2R | 25286936 | 2R | 23905317..23905545 | 19..247 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 23905605..23905794 | 244..433 | 950 | 100 | Plus |
2R | 25286936 | 2R | 23905855..23905997 | 432..574 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:45:47 has no hits.
BO05896.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:17 Download gff for
BO05896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-PA | 283..1113 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:57 Download gff for
BO05896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5330-PA | 283..1113 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:36 Download gff for
BO05896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 392..1225 | 11..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:27:37 Download gff for
BO05896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 392..1225 | 11..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:27:37 Download gff for
BO05896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23905311..23905541 | 11..243 | 98 | <- | Plus |
2R | 23905605..23905793 | 244..432 | 100 | <- | Plus |
2R | 23905856..23905996 | 433..573 | 100 | <- | Plus |
2R | 23906060..23906332 | 574..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:36 Download gff for
BO05896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19792834..19793064 | 11..243 | 98 | <- | Plus |
arm_2R | 19793128..19793316 | 244..432 | 100 | <- | Plus |
arm_2R | 19793379..19793519 | 433..573 | 100 | <- | Plus |
arm_2R | 19793583..19793855 | 574..846 | 99 | | Plus |
BO05896.5prime Sequence
882 bp (685 high quality bases) assembled on 2005-11-29
> BO05896.5prime
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGAGAAGAAGATGACCCTTAC
TGTGAAGACCATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGC
GCACCATTGTGAAGCAGGTTCCGACGGATTCCTTCTTTCATTTCTTCAGC
CCACCAGAGGTCCCGAGCGACCAGGAGGAAGT
BO05896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5330-PA | 1113 | Nap1-RA | 1..866 | 17..882 | 4255 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1376 | CG5330-RC | 125..990 | 17..882 | 4285 | 99.7 | Plus |
Nap1-RB | 1393 | CG5330-RB | 142..1007 | 17..882 | 4285 | 99.7 | Plus |
Nap1-RA | 1361 | CG5330-RA | 110..975 | 17..882 | 4285 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23906060..23906528 | 571..103 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 23905624..23905794 | 882..712 | 810 | 98.2 | Minus |
2R | 25286936 | 2R | 23905855..23905997 | 713..571 | 715 | 100 | Minus |
2R | 25286936 | 2R | 23906614..23906700 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:55:21 has no hits.
BO05896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:18 Download gff for
BO05896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:00:59 Download gff for
BO05896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5330-PA | 1..866 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:00 Download gff for
BO05896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..975 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:45 Download gff for
BO05896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..975 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:45 Download gff for
BO05896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23905624..23905793 | 713..882 | 98 | <- | Minus |
2R | 23905856..23905996 | 572..712 | 100 | <- | Minus |
2R | 23906060..23906528 | 103..571 | 100 | <- | Minus |
2R | 23906615..23906700 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:00 Download gff for
BO05896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19793147..19793316 | 713..882 | 98 | <- | Minus |
arm_2R | 19793379..19793519 | 572..712 | 100 | <- | Minus |
arm_2R | 19793583..19794051 | 103..571 | 100 | <- | Minus |
arm_2R | 19794138..19794223 | 17..102 | 100 | | Minus |
BO05896.complete Sequence
1144 bp (1144 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630197
> BO05896.complete
GAAGTTATCAGTCGACATGGACGCCCCAGCCGAAGGACACGTTGACCCCG
AGTCCTGCAACGAAATCGAGGACGAGAAGTCCGGCTCGGACTGCCAGTCG
ATGCCCGCCTACATGAACTCGGTCATGCGGCGACAGTATCTGCAGCAAAT
GGTCAAGATGCTGCCGGCTCCAGTGCAGAATCGGATTGTGTTCCTGAAAA
ACCTACAGCTGCAGCACCTGAATATCGAGGCCCAGTTCTTTGAGGACGTC
TACAAGCTGGAGCAGAAGTACCAGGTGCAGTACCAGCCGTTGTTCGATAA
GCGCAGGGAGATCATCGAGGGCAAGGTGGACCCCGCCGAGGAGAAGCCCC
AGTGGAAGGAACCGGAGTCGTCGACCGACAACGAGGCCGATGCCGAGCAC
TTCCGCGAGGCCCTGAGCAGTTTGAAAAGTATTCCCAAGGATGCCAAGGG
CATTCCCGGCTTCTGGCTGACGGTGTTCCGCAACACGGCCATAATGTCTG
AGATGGTGCAGCCGCACGACGAGCCCGCCATCCGCAAGCTAATCGATATT
TCCATCAAGTACGACAACGGGCATTCGTACACCTTGGAGTTTCACTTCGA
CAAGAACGAGTACTTCTCCAACTCAGTTCTCACAAAGCAGTACGTTTTGA
AGTCCACCGTGGATCCCAACGATCCGTTCGCATTTGAAGGCCCAGAGATC
TACAAGTGCACGGGGTGCACCATTAACTGGGAGAAGAAGATGAACCTTAC
TGTGAAGACCATCCGCAAGAAGCAGAAGCACAAGGAGCGCGGCGCAGTGC
GCACCATTGTGAAGCAGGTTCCGACGGATTCCTTCTTCAATTTCTTCAGC
CCACCAGAGGTCCCGAGCGACCAGGAGGAAGTCGACGACGACTCCCAGCA
GATCCTGGCCACCGACTTCGAAATTGGTCACTTCTTGCGCGCCAGAATTA
TTCCAAAAGCAGTGCTTTACTACACTGGCGACATCGTCGACGATGAGGAC
GATGAGGACGAAGAGGAGTATGACGAGAACGAGGAGGATGAGTACGACGA
CGACGATGCACCGCCACCAAAGGGCCCCAAATCAGCCGGTATCAAGAAGC
AGTCGCCCAACGACTGCCCGAATCAGGCAAGCTTTCTAGACCAT
BO05896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1113 | CG5330-PC | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Nap1-RB | 1113 | CG5330-PB | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Nap1-RA | 1113 | CG5330-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-RC | 1376 | CG5330-RC | 125..1234 | 17..1126 | 5550 | 100 | Plus |
Nap1-RB | 1393 | CG5330-RB | 142..1251 | 17..1126 | 5550 | 100 | Plus |
Nap1-RA | 1361 | CG5330-RA | 110..1219 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23906060..23906528 | 571..103 | 2345 | 100 | Minus |
2R | 25286936 | 2R | 23905317..23905545 | 1126..898 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 23905605..23905794 | 901..712 | 950 | 100 | Minus |
2R | 25286936 | 2R | 23905855..23905997 | 713..571 | 715 | 100 | Minus |
2R | 25286936 | 2R | 23906614..23906700 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:33:54 has no hits.
BO05896.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:57 Download gff for
BO05896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 1..1113 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:07 Download gff for
BO05896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 130..1245 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:59 Download gff for
BO05896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..1219 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:57 Download gff for
BO05896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 130..1245 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:11 Download gff for
BO05896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nap1-RA | 110..1219 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:11 Download gff for
BO05896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23905315..23905541 | 902..1128 | 99 | <- | Minus |
2R | 23905605..23905793 | 713..901 | 100 | <- | Minus |
2R | 23905856..23905996 | 572..712 | 100 | <- | Minus |
2R | 23906060..23906528 | 103..571 | 100 | <- | Minus |
2R | 23906615..23906700 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:59 Download gff for
BO05896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19793128..19793316 | 713..901 | 100 | <- | Minus |
arm_2R | 19793379..19793519 | 572..712 | 100 | <- | Minus |
arm_2R | 19792838..19793064 | 902..1128 | 99 | <- | Minus |
arm_2R | 19793583..19794051 | 103..571 | 100 | <- | Minus |
arm_2R | 19794138..19794223 | 17..102 | 100 | | Minus |
BO05896.pep Sequence
Translation from 16 to 1144
> BO05896.pep
MDAPAEGHVDPESCNEIEDEKSGSDCQSMPAYMNSVMRRQYLQQMVKMLP
APVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQVQYQPLFDKRREII
EGKVDPAEEKPQWKEPESSTDNEADAEHFREALSSLKSIPKDAKGIPGFW
LTVFRNTAIMSEMVQPHDEPAIRKLIDISIKYDNGHSYTLEFHFDKNEYF
SNSVLTKQYVLKSTVDPNDPFAFEGPEIYKCTGCTINWEKKMNLTVKTIR
KKQKHKERGAVRTIVKQVPTDSFFNFFSPPEVPSDQEEVDDDSQQILATD
FEIGHFLRARIIPKAVLYYTGDIVDDEDDEDEEEYDENEEDEYDDDDAPP
PKGPKSAGIKKQSPNDCPNQASFLDH
BO05896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nap1-PC | 370 | CG5330-PC | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PB | 370 | CG5330-PB | 1..370 | 1..370 | 1974 | 100 | Plus |
Nap1-PA | 370 | CG5330-PA | 1..370 | 1..370 | 1974 | 100 | Plus |
CG3708-PB | 362 | CG3708-PB | 46..340 | 30..325 | 602 | 40.9 | Plus |
mil-PA | 283 | CG5017-PA | 37..277 | 60..347 | 425 | 33.7 | Plus |