Clone Sequence Records
BO05904.3prime Sequence
894 bp (816 high quality bases) assembled on 2005-12-02
> BO05904.3prime
ATGGTCTAGAAAGCTTGCACGGCGATCCGTCTTGCCATTTCCACGCTTGC
CGGAGAACAAATGCTTCGGCATCTTGGTGCCGATGAAGCGATCCGCCTCG
CCCTTGAGACCCCTGCTTGTGACCTTCTTGGCAATATCCCGCTTGGCCAT
AATTTGCGCCTTCTTGCGAATGGCCAAGTTCTTGATGCCCAGTGTGTCGC
GCGACGGCGCCCGCTTCAGAGGCTGACCAGTCTTCCTGACCACCGCAGAG
GACTCCTTGTCGAGCAGCGGCTGCATGGGCACCTTCTTGGAGCCAACTGC
CACCTGGCCACGACGCAGATCCACCACGGACTTGGTGAAGTTGGCGTTCT
CGCTGCCGGACATGTCCACACCGAGGCCCTCCATCGTCGACACCAGTTTC
TGTACGGAACGGTCACGCACCTTGGGCTGCTTGTTTCGTGGGATGACTGG
CTTGTTCTTTCGCGACGACAGTCGCTTTTCGTCGCGCAGCTCGAAGCGCT
TGCCACGGATTTGCTTGGCTATCTCGCGGATCTCCTTGAGCGTCTCGTCC
ATGGTCATATCGGGCACCTTGTAGACGCCGCTCTCCTCCCGCAGTCCCTC
CTCGCGCTCCAGCTCCTCCAGCTTGTCGAAGATGTCGGCATCGATGTAGT
CGGCAATGTTGTGACCCTGCCAGAACTCTGGAATAATGTCGTAGCGCTCC
TCCTCGGGGATTTCGCTGTAGTTCTTCTTGAGGTCCAGCGTGTAGTCGTC
GCCCATCTCCTCCTCGATCTCCTTCTCCAGCTTGCGCTTGCGCTCTGCCT
TGTCGGCATTCTGTAGCAGGCGCGCCGAGGCCTTTTCTGGGATGCAGGGT
GCACGAAGTTTGTCATCTCGCGGCGCTGGCATCGCCACATGCAA
BO05904.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8801-PA | 1959 | CG8801-RA | 1081..1956 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 1184..2059 | 894..19 | 4380 | 100 | Minus |
| Non1-RA | 2181 | CG8801-RA | 1184..2059 | 894..19 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9396482..9397357 | 19..894 | 4380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:29:19 has no hits.
BO05904.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:22 Download gff for
BO05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1083..1959 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:03 Download gff for
BO05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1083..1959 | 15..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:03 Download gff for
BO05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 1186..2064 | 13..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:21 Download gff for
BO05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 1186..2064 | 13..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:21 Download gff for
BO05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9396477..9397355 | 13..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:03 Download gff for
BO05904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5283982..5284860 | 13..892 | 99 | | Plus |
BO05904.5prime Sequence
854 bp (838 high quality bases) assembled on 2005-12-02
> BO05904.5prime
GAAGTTATCAGTCGACATGAGTCTGTACAACTTCAAAAAGATCATGGTGG
TTCCGCCAGCAAAGGACTTCATCGACATTATGCTGTCGAAGACACAGCGC
AAGACCCCGACGGTGGTCCACAAGGGCTACAAAATATCCAGAATCCGGGC
ATTCTACACGCGCAAGGTGAAGTACACGCAGCAGAACTTCCACGATCGCT
TGTCGCAGATCATTCAGGACTTTCCCAAACTGGACGACGTGCATCCTTTC
TACGCCGACTTGATGAACGTGCTGTACGACAAGGATCATTACAAGCTGGC
GCTGGGTCAACTCAACACAGCCAGGCATTTGGTGGACAATGTGGCCAAGG
ACTACGTGCGCCTGCTGAAGTACGGTGACTCGCTGTATCGCTGCAAACAG
TTGAAGAAAGCTGCCCTGGGTCGCATGGCCACCATTATGAAGCGACAGGC
CTCCAATCTGACGTATCTGGAGCAAGTGCGTCAGCATCTCTCGCGTCTGC
CCACCATCGATCCCTATTCGCGTACCATCATCATCTGCGGTTTCCCCAAC
GTGGGCAAGTCCTCGTTCATCAACAAGATCACCCGCGCCGATGTGGAAGT
GCAGCCCTACGCCTTCACCACGAAATCCCTGTACGTGGGACACACAGACT
ACAAATATCTGCGCTGGCAGGTCATTGACACACCCGGCATCCTGGATCAT
CCCCTGGAAGAGCGCAATGTGATCGAAATGCAAGCCATTACTGCCTTGGC
TCATTTGCGCGCCTGCGTCCTGTACTTCATGGATATCTCCGAGCAGTGCG
GACACTCCTTGGAGGAACAGGTCAAGCTGTTCGAGAGCATCANGCCTTTG
TTTA
BO05904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8801-PA | 1959 | CG8801-RA | 1..838 | 17..854 | 4171 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 104..941 | 17..854 | 4179 | 99.9 | Plus |
| Non1-RA | 2181 | CG8801-RA | 104..941 | 17..854 | 4179 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9397600..9398114 | 854..340 | 2564 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9398184..9398460 | 339..63 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 9398583..9398631 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:43:08 has no hits.
BO05904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:22 Download gff for
BO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:04 Download gff for
BO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-PA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:06 Download gff for
BO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 104..940 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:15 Download gff for
BO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 104..940 | 17..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:15 Download gff for
BO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9397601..9398114 | 340..853 | 99 | <- | Minus |
| 2R | 9398184..9398458 | 65..339 | 100 | <- | Minus |
| 2R | 9398584..9398631 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:06 Download gff for
BO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5285106..5285619 | 340..853 | 99 | <- | Minus |
| arm_2R | 5285689..5285963 | 65..339 | 100 | <- | Minus |
| arm_2R | 5286089..5286136 | 17..64 | 100 | | Minus |
BO05904.complete Sequence
1990 bp assembled on 2010-02-24
GenBank Submission: KX796918
> BO05904.complete
GAAGTTATCAGTCGACATGAGTCTGTACAACTTCAAAAAGATCATGGTGG
TTCCGCCAGCAAAGGACTTCATCGACATTATGCTGTCGAAGACACAGCGC
AAGACCCCGACGGTGGTCCACAAGGGCTACAAAATATCCAGAATCCGGGC
ATTCTACACGCGCAAGGTGAAGTACACGCAGCAGAACTTCCACGATCGCT
TGTCGCAGATCATTCAGGACTTTCCCAAACTGGACGACGTGCATCCTTTC
TACGCCGACTTGATGAACGTGCTGTACGACAAGGATCATTACAAGCTGGC
GCTGGGTCAACTCAACACAGCCAGGCATTTGGTGGACAATGTGGCCAAGG
ACTACGTGCGCCTGCTGAAGTACGGTGACTCGCTGTATCGCTGCAAACAG
TTGAAGAAAGCTGCCCTGGGTCGCATGGCCACCATTATGAAGCGACAGGC
CTCCAATCTGACGTATCTGGAGCAAGTGCGTCAGCATCTCTCGCGTCTGC
CCACCATCGATCCCTATTCGCGTACCATCATCATCTGCGGTTTCCCCAAC
GTGGGCAAGTCCTCGTTCATCAACAAGATCACCCGCGCCGATGTGGAAGT
GCAGCCCTACGCCTTCACCACGAAATCCCTGTACGTGGGACACACAGACT
ACAAATATCTGCGCTGGCAGGTCATTGACACACCCGGCATCCTGGATCAT
CCCCTGGAAGAGCGCAATGTGATCGAAATGCAAGCCATTACTGCCTTGGC
TCATTTGCGCGCCTGCGTCCTGTACTTCATGGATATCTCCGAGCAGTGCG
GACACTCCTTGGAGGAACAGGTCAAGCTGTTCGAGAGCATCAAGCCTTTG
TTTACAAACAAACCCCTCATCCTGGCCATCAACAAGATCGATATTCTAAC
ACCAGAGGATCTGCCAGAGGAGCGACGAGCGATTATCACCAAACTACAGG
AGGACAAGAACATTCCCGTAATGCTCATGTCCACCGTACAGGAAACCGGT
GTCATGGAGGTGAAAACCGAGGCATGTGAGCGTTTGCTCTCGTACCGTGT
TGACCAGAAGATGCGCACAAAGAAGGTGGACAACATCCTGAACCGCTTGC
ATGTGGCGATGCCAGCGCCGCGAGATGACAAACTTCGTGCACCCTGCATC
CCAGAAAAGGCCTCGGCGCGCCTGCTACAGAATGCCGACAAGGCAGAGCG
CAAGCGCAAGCTGGAGAAGGAGATCGAGGAGGAGATGGGCGACGACTACA
CGCTGGACCTCAAGAAGAACTACAGCGAAATCCCCGAGGAGGAGCGCTAC
GACATTATTCCAGAGTTCTGGCAGGGTCACAACATTGCCGACTACATCGA
TGCCGACATCTTCGACAAGCTGGAGGAGCTGGAGCGCGAGGAGGGACTGC
GGGAGGAGAGCGGCGTCTACAAGGTGCCCGATATGACCATGGACGAGACG
CTCAAGGAGATCCGCGAGATAGCCAAGCAAATCCGTGGCAAGCGCTTCGA
GCTGCGCGACGAAAAGCGACTGTCGTCGCGAAAGAACAAGCCAGTCATCC
CACGAAACAAGCAGCCCAAGGTGCGTGACCGTTCCGTACAGAAACTGGTG
TCGACGATGGAGGGCCTCGGTGTGGACATGTCCGGCAGCGAGAACGCCAA
CTTCACCAAGTCCGTGGTGGATCTGCGTCGTGGCCAGGTGGCAGTTGGCT
CCAAGAAGGTGCCCATGCAGCCGCTGCTCGACAAGGAGTCCTCTGCGGTG
GTCAGGAAGACTGGTCAGCCTCTGAAGCGGGCGCCGTCGCGCGACACACT
GGGCATCAAGAACTTGGCCATTCGCAAGAAGGCGCAAATTATGGCCAAGC
GGGATATTGCCAAGAAGGTCACAAGCAGGGGTCTCAAGGGCGAGGCGGAT
CGCTTCATCGGCACCAAGATGCCGAAGCATTTGTTCTCCGGCAAGCGTGG
AAATGGCAAGACGGATCGCCGTGCAAGCTTTCTAGACCAT
BO05904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 1959 | CG8801-PB | 1..1956 | 17..1972 | 9780 | 100 | Plus |
| Non1-RA | 1959 | CG8801-PA | 1..1956 | 17..1972 | 9780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-RB | 2276 | CG8801-RB | 104..2059 | 17..1972 | 9780 | 100 | Plus |
| Non1-RA | 2181 | CG8801-RA | 104..2059 | 17..1972 | 9780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9396482..9398114 | 1972..340 | 8165 | 100 | Minus |
| 2R | 25286936 | 2R | 9398184..9398460 | 339..63 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 9398583..9398631 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:28:39 has no hits.
BO05904.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:43 Download gff for
BO05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 120..2075 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:02 Download gff for
BO05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8801-RA | 104..2059 | 17..1974 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:46 Download gff for
BO05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Non1-RA | 104..2059 | 17..1974 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:46 Download gff for
BO05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9396480..9398114 | 340..1974 | 99 | <- | Minus |
| 2R | 9398184..9398458 | 65..339 | 100 | <- | Minus |
| 2R | 9398584..9398631 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:02 Download gff for
BO05904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5285689..5285963 | 65..339 | 100 | <- | Minus |
| arm_2R | 5286089..5286136 | 17..64 | 100 | | Minus |
| arm_2R | 5283985..5285619 | 340..1974 | 99 | <- | Minus |
BO05904.pep Sequence
Translation from 16 to 1990
> BO05904.pep
MSLYNFKKIMVVPPAKDFIDIMLSKTQRKTPTVVHKGYKISRIRAFYTRK
VKYTQQNFHDRLSQIIQDFPKLDDVHPFYADLMNVLYDKDHYKLALGQLN
TARHLVDNVAKDYVRLLKYGDSLYRCKQLKKAALGRMATIMKRQASNLTY
LEQVRQHLSRLPTIDPYSRTIIICGFPNVGKSSFINKITRADVEVQPYAF
TTKSLYVGHTDYKYLRWQVIDTPGILDHPLEERNVIEMQAITALAHLRAC
VLYFMDISEQCGHSLEEQVKLFESIKPLFTNKPLILAINKIDILTPEDLP
EERRAIITKLQEDKNIPVMLMSTVQETGVMEVKTEACERLLSYRVDQKMR
TKKVDNILNRLHVAMPAPRDDKLRAPCIPEKASARLLQNADKAERKRKLE
KEIEEEMGDDYTLDLKKNYSEIPEEERYDIIPEFWQGHNIADYIDADIFD
KLEELEREEGLREESGVYKVPDMTMDETLKEIREIAKQIRGKRFELRDEK
RLSSRKNKPVIPRNKQPKVRDRSVQKLVSTMEGLGVDMSGSENANFTKSV
VDLRRGQVAVGSKKVPMQPLLDKESSAVVRKTGQPLKRAPSRDTLGIKNL
AIRKKAQIMAKRDIAKKVTSRGLKGEADRFIGTKMPKHLFSGKRGNGKTD
RRASFLDH
BO05904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Non1-PB | 652 | CG8801-PB | 1..652 | 1..652 | 3340 | 100 | Plus |
| Non1-PA | 652 | CG8801-PA | 1..652 | 1..652 | 3340 | 100 | Plus |
