Clone Sequence Records
BO05907.3prime Sequence
973 bp (663 high quality bases) assembled on 2005-12-02
> BO05907.3prime
ATGGTCTAGAAAGCTTGCGTGAAAGCTTGAAAGTGGAAATAAATCCTCCC
AAATTTGATACCGATTCAAAAAGAAACCGCCAGATTTTGCTGTAAGGTTA
TTTCCAATTTCTAGATATCCTTTATCTTGCGCGTTGTATAGCGGCCAATT
CAGACCTTTCAGGTATTCATCGTTTTTGTTGTGAGGATCACCCTTTTGAG
CAAATTCAATCCACATACGTGTCAATAGCTCGATCATAAAATTTTCCGGA
TCCTCTCGCTTCAACAAAGGAATCAAAAGTCCAACATGGAATAAATATAT
TAGCTCGTCATGGTGAACGGGGCCTATGGTTTGCTGGTTATCGGGATTTT
TCAAGAAGGTATATCTACCCTTGTAACGGAACAGATATGTGTAAATGGGT
GTGTGGGGGGACATCAGTTGAAGAAATCGATGGAAGGACACTCCAATCAG
GGCGTCGCTCAAGAGTTCACCCATACCCTTAAGTGATTTCGGGTACTCCA
GCTTGTCCAAACTTTCCGGCATATATTTTTCCCGGAAAACTCGACTGGCA
GCTCGCGATTGCGTTGAGTTTTGTTCCAAGAGCAACGCAATAGAAGCATA
GTGTTCCCAATCCCTATTATAGCGGTTAACAATGCTTTCATTTCGCAGAT
CAAAGAAAGCGCCCGAAAGGAACTCAAACTCCGTAATGCCGGTGATGAGG
GCTACCTTGTGAAAGTCGCCACGTCGAGCTGTTTTGAAAGGACTTTCGAT
GAGGTAACGCTCCTGCCCAAAATCCTTCTCCACAACGATTCTCCAGTTGA
GCACGGGATTCCAGCCGAATTCAAACATGCCATTATAAGTGCTCACATAA
TCCAAGTAGGGCTTCCGCCTCATACACTCCACCATTTCCCCCATGGATTC
CTGTGGACACTTCAATAAACCAGCCTGACGGTTGGCCAGTTGTAGATCAT
TTGTCTTGGACTTAACTGGTCCG
BO05907.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4757-PA | 1653 | CG4757-RA | 718..1650 | 951..19 | 4615 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4757-RB | 2098 | CG4757-RB | 718..1672 | 973..19 | 4685 | 99.5 | Minus |
| CG4757-RA | 1729 | CG4757-RA | 718..1672 | 973..19 | 4685 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11162314..11162644 | 653..323 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 11161924..11162243 | 973..654 | 1495 | 97.8 | Minus |
| 3R | 32079331 | 3R | 11162900..11163072 | 191..19 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 11162710..11162844 | 325..191 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:48:48 has no hits.
BO05907.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:23 Download gff for
BO05907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-PA | 696..1653 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:06 Download gff for
BO05907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-PA | 696..1653 | 15..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:39 Download gff for
BO05907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 718..1681 | 8..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:14:46 Download gff for
BO05907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 718..1681 | 8..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:14:46 Download gff for
BO05907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11161924..11162243 | 654..973 | 98 | -> | Minus |
| 3R | 11162314..11162643 | 324..653 | 100 | -> | Minus |
| 3R | 11162712..11162844 | 191..323 | 100 | -> | Minus |
| 3R | 11162901..11163075 | 15..190 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:39 Download gff for
BO05907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6987646..6987965 | 654..973 | 98 | -> | Minus |
| arm_3R | 6988036..6988365 | 324..653 | 100 | -> | Minus |
| arm_3R | 6988434..6988566 | 191..323 | 100 | -> | Minus |
| arm_3R | 6988623..6988797 | 15..190 | 98 | -> | Minus |
BO05907.5prime Sequence
989 bp (745 high quality bases) assembled on 2005-12-02
> BO05907.5prime
GAAGTTATCAGTCGACATGCTGATGTTATTCGTAGTGGAACTGCTGGTTC
TACTGGCCAGTTCATCGGTCCTCTCCATCGAGGTGGACACCGAACTGGGA
CGGGTGCGAGGAGCCAATCTGACCTCCAGATTGGGTGTCAACTTTCATGC
CTTCCGAGGCATTCGGTATGCAGAGCCACCTCTGGGAGATTTGCGATTTG
TGAATCCGCAGCCAGTGAAGCCCTGGTCCCCGAAAATCTTCGATGCTAGC
GAGGATGGACCGATGTGCCCGCAACCGTGGGACAATATGACCGATGTATC
TGAGGACTGTCTGAGACTCAATGTGTATACAAAGGATTTGAAGGGCCGCC
GACCTGTGATCGTGTTCCTGCATCCCGGCGGATTCTATGTCTTCTCTGGA
CAGAGTAAATATCTAGCAGGACCGGAGCATTTTATGGATCGTGATTGCGT
GTTGGTATCGCTAAATTATCGGCTGGGTAGTTTGGGATTCCTGGCCACCG
GAAGTAAGGAAGCTCCTGGCAATGCTGGTCTCAAGGATCAAGTCTTGGCT
TTGCGCTGGATCCAGCAGCACATCCAACGTTTTGGCGGTGATCCCGATAG
TGTAACCCTTCTGGGTTACAGTGCGGGAAGTATAAGTGTAGCTCTGCACA
TGCTATCGCCCATGTCACGTGGTCTATTCCATCGAGGCATCTGCATGAGT
GCTGCTCCATACGGACCAGTTAAGTACAAAGACAATGATCTACAACTGGG
CCAACGTCAGGCTGGTTTATTGAAGTGTCCACAGGAATCCATTGGGGAAA
TGGTGGAGTGTATGAGGCGGAAGCCCTACTTGGATTATGTGAGCACTTAT
AATGGCATGTTTGAATTCGGCTGGAATCCCGTGCTNCACTGGAAGATCGT
TGTGGAGAAAGATTTTGGGCAGGAGCGTTACCTCATCGAAAGTCCTTTCA
AACAGCTCGACGTGGCGACTTTCAAAAGGTAGCCTCATC
BO05907.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4757-PA | 1653 | CG4757-RA | 1..936 | 17..952 | 4511 | 99.2 | Plus |
| CG4757-PA | 1653 | CG4757-RA | 935..969 | 950..984 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4757-RB | 2098 | CG4757-RB | 23..997 | 17..989 | 4709 | 99 | Plus |
| CG4757-RA | 1729 | CG4757-RA | 23..997 | 17..989 | 4709 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11161229..11162197 | 17..984 | 4679 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:43:31 has no hits.
BO05907.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:24 Download gff for
BO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-PA | 1..975 | 17..989 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:07 Download gff for
BO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-PA | 1..975 | 17..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:07 Download gff for
BO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 23..997 | 17..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:16 Download gff for
BO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 23..997 | 17..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:16 Download gff for
BO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11161229..11162203 | 17..989 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:07 Download gff for
BO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6986951..6987925 | 17..989 | 98 | | Plus |
BO05907.complete Sequence
1684 bp (1684 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630199
> BO05907.complete
GAAGTTATCAGTCGACATGCTGATGTTATTCGTAGTGGAACTGCTGGTTC
TACTGGCCAGTTCATCGGTCCTCTCCATCGAGGTGGACACCGAACTGGGA
CGGGTGCGAGGAGCCAATCTGACCTCCAGATTGGGTGTCAACTTTCATGC
CTTCCGAGGCATTCGGTATGCAGAGCCACCTCTGGGAGATTTGCGATTTG
TGAATCCGCAGCCAGTGAAGCCCTGGTCCCCGAAAATCTTCGATGCTAGC
GAGGATGGACCGATGTGCCCGCAACCGTGGGACAATATGACCGATGTATC
TGAGGACTGTCTGAGACTCAATGTGTATACAAAGGATTTGAAGGGCCGCC
GACCTGTGATCGTGTTCCTGCATCCCGGCGGATTCTATGTCTTCTCTGGA
CAGAGTAAATATCTAGCAGGACCGGAGCATTTTATGGATCGTGATTGCGT
GTTGGTATCGCTAAATTATCGGCTGGGTAGTTTGGGATTCCTGGCCACCG
GAAGTAAGGAAGCTCCTGGCAATGCTGGTCTCAAGGATCAAGTCTTGGCT
TTGCGCTGGATCCAGCAGCACATCCAACGTTTTGGCGGTGATCCCGATAG
TGTAACCCTTCTGGGTTACAGTGCGGGAAGTATAAGTGTAGCTCTGCACA
TGCTATCGCCCATGTCACGTGGTCTATTCCATCGAGGCATCTGCATGAGT
GCTGCTCCATACGGACCAGTTAAGTACAAAGACAATGATCTACAACTGGC
CAAACGTCAGGCTGGTTTATTGAAGTGTCCACAGGAATCCATTGGGGAAA
TGGTGGAGTGTATGAGGCGGAAGCCCTACTTGGATTATGTGAGCACTTAT
AATGGCATGTTTGAATTCGGCTGGAATCCCGTGCTCAACTGGAGAATCGT
TGTGGAGAAGGATTTTGGGCAGGAGCGTTACCTCATCGAAAGTCCTTTCA
AAACAGCTCGACGTGGCGACTTTCACAAGGTAGCCCTCATCACCGGCATT
ACGGAGTTTGAGTTCCTTTCGGGCGCTTTCTTTGATCTGCGAAATGAAAG
CATTGTTAACCGCTATAATAGGGATTGGGAACACTATGCTTCTATTGCGT
TGCTCTTGGAACAAAACTCAACGCAATCGCGAGCTGCCAGTCGAGTTTTC
CGGGAAAAATATATGCCGGAAAGTTTGGACAAGCTGGAGTACCCGAAATC
ACTTAAGGGTATGGGTGAACTCTTGAGCGACGCCCTGATTGGAGTGTCCT
TCCATCGATTTCTTCAACTGATGTCCCCCCACACACCCATTTACACATAT
CTGTTCCGTTACAAGGGTAGATATACCTTCTTGAAAAATCCCGATAACCA
GCAAACCATAGGCCCCGTTCACCATGACGAGCTAATATATTTATTCCATG
TTGGACTTTTGATTCCTTTGTTGAAGCGAGAGGATCCGGAAAATTTTATG
ATCGAGCTATTGACACGTATGTGGATTGAATTTGCTCAAAAGGGTGATCC
TCACAACAAAAACGATGAATACCTGAAAGGTCTGAATTGGCCGCTATACA
ACGCGCAAGATAAAGGATATCTAGAAATTGGAAATAACCTTACAGCAAAA
TCTGGCGGTTTCTTTTTGAATCGGTATCAAATTTGGGAGGATTTATTTCC
ACTTTCAAGCTTTCACGCAAGCTTTCTAGACCAT
BO05907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4757-RB | 1653 | CG4757-PB | 1..1650 | 17..1666 | 8250 | 100 | Plus |
| CG4757-RA | 1653 | CG4757-PA | 1..1650 | 17..1666 | 8250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4757-RB | 2098 | CG4757-RB | 23..1672 | 17..1666 | 8250 | 100 | Plus |
| CG4757-RA | 1729 | CG4757-RA | 23..1672 | 17..1666 | 8250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11161229..11162243 | 17..1031 | 5075 | 100 | Plus |
| 3R | 32079331 | 3R | 11162314..11162644 | 1032..1362 | 1655 | 100 | Plus |
| 3R | 32079331 | 3R | 11162900..11163072 | 1494..1666 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 11162710..11162844 | 1360..1494 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:58:10 has no hits.
BO05907.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:27 Download gff for
BO05907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 1..1653 | 17..1670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:34 Download gff for
BO05907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 28..1686 | 17..1677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:53:14 Download gff for
BO05907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 23..1672 | 17..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:27 Download gff for
BO05907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 28..1686 | 17..1677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:27 Download gff for
BO05907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4757-RA | 23..1672 | 17..1668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:27 Download gff for
BO05907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11162901..11163072 | 1495..1668 | 98 | | Plus |
| 3R | 11161229..11162243 | 17..1031 | 100 | -> | Plus |
| 3R | 11162314..11162643 | 1032..1361 | 100 | -> | Plus |
| 3R | 11162712..11162844 | 1362..1494 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:53:14 Download gff for
BO05907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6988623..6988794 | 1495..1668 | 98 | | Plus |
| arm_3R | 6986951..6987965 | 17..1031 | 100 | -> | Plus |
| arm_3R | 6988036..6988365 | 1032..1361 | 100 | -> | Plus |
| arm_3R | 6988434..6988566 | 1362..1494 | 100 | -> | Plus |
BO05907.pep Sequence
Translation from 16 to 1684
> BO05907.pep
MLMLFVVELLVLLASSSVLSIEVDTELGRVRGANLTSRLGVNFHAFRGIR
YAEPPLGDLRFVNPQPVKPWSPKIFDASEDGPMCPQPWDNMTDVSEDCLR
LNVYTKDLKGRRPVIVFLHPGGFYVFSGQSKYLAGPEHFMDRDCVLVSLN
YRLGSLGFLATGSKEAPGNAGLKDQVLALRWIQQHIQRFGGDPDSVTLLG
YSAGSISVALHMLSPMSRGLFHRGICMSAAPYGPVKYKDNDLQLAKRQAG
LLKCPQESIGEMVECMRRKPYLDYVSTYNGMFEFGWNPVLNWRIVVEKDF
GQERYLIESPFKTARRGDFHKVALITGITEFEFLSGAFFDLRNESIVNRY
NRDWEHYASIALLLEQNSTQSRAASRVFREKYMPESLDKLEYPKSLKGMG
ELLSDALIGVSFHRFLQLMSPHTPIYTYLFRYKGRYTFLKNPDNQQTIGP
VHHDELIYLFHVGLLIPLLKREDPENFMIELLTRMWIEFAQKGDPHNKND
EYLKGLNWPLYNAQDKGYLEIGNNLTAKSGGFFLNRYQIWEDLFPLSSFH
ASFLDH
BO05907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4757-PB | 550 | CG4757-PB | 1..550 | 1..550 | 2929 | 100 | Plus |
| CG4757-PA | 550 | CG4757-PA | 1..550 | 1..550 | 2929 | 100 | Plus |
| CG4382-PB | 580 | CG4382-PB | 37..572 | 14..547 | 1217 | 44.7 | Plus |
| CG3841-PB | 564 | CG3841-PB | 12..536 | 9..548 | 795 | 34.9 | Plus |
| CG3841-PA | 564 | CG3841-PA | 12..536 | 9..548 | 795 | 34.9 | Plus |
