Clone BO05910 Report

Search the DGRC for BO05910

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:59
Well:10
Vector:pDNR-Dual
Associated Gene/TranscripteIF-2alpha-RA
Protein status:BO05910.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO05910.3prime Sequence

852 bp (736 high quality bases) assembled on 2005-12-02

> BO05910.3prime
ATGGTCTAGAAAGCTTGCATCCTCTTCCTCCTCCTCATCCTCCTCGTTCG
CACGACCCGCCCCCGATCCCTTGTGGTTGAACTCCTTCTCTGGATCGAAC
TGCATGCCCTCCTGGTCGGCGCCATCCTCCTCGTCATCGTCGCCAGCCAC
CTGGGCGTTCTCGGCCTCAGCGCGCTCCAGGCGTCTGGCCAGATCCGCCT
CGTCGATGGCCGTAACCAGTTTGGGTGCCATGATCACCTTGAACTCTCCA
TCGTACTCGCTGGTCTTGGCGCGAATGTGCTCAATGGCCACCTCCAGAGC
CTTTAAACCGTCTGTCTTCTTGGTAGTGGATGTGGTCATTACATAGAGTG
GCGGTGCTATCAGGTTGATGCGAATGGGCAGCTCCTCGGTGCTCAGCTCC
AGGCCCTTGGTGAGCGATGCCTTGACAGCGTCGATGCCCTCGTAACCGTA
GCAGGAGCACTCGATGTCCGCACGGATCTTGACAGTGGGCGAGACCAGCT
TCCGCTTGATGTTGCTCAACAGGACCTCCTTGGTCTCCGGTTCCAGGTTG
CACTCATCGAAGACGGTGGGATCGGTGACCGATTGCTTGAAGATGTCGTA
GGCGACCGTCTTGTTGTTGTACTTCTTCTCGAAGTGCCAGGCGGTCTTCT
GGTAGAGATCTTCCAGCTTCTCGTTGCCCTCGAAGCCGAGTATGTCGGCG
ACATGGCGGAGCAGTGAGTTGATGGCCTTGGCCTTAGCGAAGCGCTCGGT
GCACTTCTCGACATCTTCGGGCGAAACGCGACGCTTCGACAGATCGATGT
AGCCCTTCTCCCTTGTCACACGGATAACCACCACCGGGTCGGTCTTGCCG
AC

BO05910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9946-PA 1026 eIF-2alpha-RA 231..1023 811..19 3965 100 Minus
CG9946-PA 1026 eIF-2alpha-RA 190..224 852..818 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2alpha-RB 1519 CG9946-RB 304..1137 852..19 4110 99.6 Minus
eIF-2alpha-RA 1200 CG9946-RA 304..1137 852..19 4110 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16446178..16446690 340..852 2445 98.4 Plus
X 23542271 X 16445558..16445885 19..346 1640 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:53:23 has no hits.

BO05910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:29 Download gff for BO05910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9946-PA 190..1026 18..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:15 Download gff for BO05910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9946-PA 190..1026 18..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:22 Download gff for BO05910.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 304..1141 13..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:22 Download gff for BO05910.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 304..1141 13..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:22 Download gff for BO05910.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16445554..16445885 13..346 99 <- Plus
X 16446185..16446690 347..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:22 Download gff for BO05910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16339587..16339918 13..346 99 <- Plus
arm_X 16340218..16340723 347..852 99   Plus

BO05910.5prime Sequence

911 bp (889 high quality bases) assembled on 2005-11-29

> BO05910.5prime
GAAGTTATCAGTCGACATGGCCCTGACGTCGCGCTTCTACAACGAGCGGT
ATCCGGAGATCGAGGATGTCGTTATGGTGAACGTGCTGTCCATCGCCGAG
ATGGGCGCCTACGTTCATCTGCTTGAGTACAACAACATCGAGGGCATGAT
CCTGCTGTCGGAGCTGTCCCGCCGGCGCATCCGCTCCATCAACAAGCTGA
TTCGTGTCGGCAAGACCGAACCGGTGGTGGTTATCCGTGTTGACAAGGAG
AAGGGCTACATCGATCTGTCGAAGCGTCGCGTTTCGCCCGAAGATGTCGA
GAAGTGCACCGAGCGCTTCGCTAAGGCCAAGGCCATCAACTCACTGCTCC
GCCATGTCGCCGACATACTCGGCTTCGAGGGCAACGAGAAGCTGGAAGAT
CTCTACCAGAAGACCGCCTGGCACTTCGAGAAGAAGTACAACAACAAGAC
GGTCGCCTACGACATCTTCAAGCAATCGGTCACCGATCCCACCGTCTTCG
ATGAGTGCAACCTGGAACCGGAGACCAAGGAGGTCCTGTTGAGCAACATC
AAGCGGAAGCTGGTCTCGCCCACTGTCAAGATCCGTGCGGACATCGAGTG
CTCCTGCTACGGTTACGAGGGCATCGACGCTGTCAAGGCATCGCTCACCA
AGGGCCTGGAGCTGAGCACCGAGGAGCTGCCCATTCGCATCAACCTGATA
GCACCGCCACTCTATGTAATGACCACATCCACTACCAAGAAGACAGACGG
TTTAAAGGCTCTGGAGGTGGCCATTGAGCACATTCGCGCCAAGACCAGCG
AGTACGATGGAGAGTTCAAGGTGATCATGGCACCCAAACTGGTTACGGCC
ATCGACGAGGCGGATCTGGCCAGACGCCTGGAGCGCGCTGAGGCCGAGAA
CGCCCAGGTGG

BO05910.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9946-PA 1026 eIF-2alpha-RA 1..895 17..911 4475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:30:53
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2alpha-RB 1519 CG9946-RB 113..1009 15..911 4485 100 Plus
eIF-2alpha-RA 1200 CG9946-RA 113..1009 15..911 4485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:30:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16446178..16446881 718..15 3490 99.7 Minus
X 23542271 X 16445686..16445885 911..712 1000 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:30:50 has no hits.

BO05910.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:30 Download gff for BO05910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9946-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:16 Download gff for BO05910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9946-PA 1..895 17..911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:07 Download gff for BO05910.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 113..1009 15..911 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:14 Download gff for BO05910.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 113..1009 15..911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:14 Download gff for BO05910.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16445686..16445885 712..911 100 <- Minus
X 16446185..16446881 15..711 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:07 Download gff for BO05910.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16339719..16339918 712..911 100 <- Minus
arm_X 16340218..16340914 15..711 100   Minus

BO05910.complete Sequence

1057 bp (1057 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630200

> BO05910.complete
GAAGTTATCAGTCGACATGGCCCTGACGTCGCGCTTCTACAACGAGCGGT
ATCCGGAGATCGAGGATGTCGTTATGGTGAACGTGCTGTCCATCGCCGAG
ATGGGCGCCTACGTTCATCTGCTTGAGTACAACAACATCGAGGGCATGAT
CCTGCTGTCGGAGCTGTCCCGCCGGCGCATCCGCTCCATCAACAAGCTGA
TTCGTGTCGGCAAGACCGAACCGGTGGTGGTTATCCGTGTTGACAAGGAG
AAGGGCTACATCGATCTGTCGAAGCGTCGCGTTTCGCCCGAAGATGTCGA
GAAGTGCACCGAGCGCTTCGCTAAGGCCAAGGCCATCAACTCACTGCTCC
GCCATGTCGCCGACATACTCGGCTTCGAGGGCAACGAGAAGCTGGAAGAT
CTCTACCAGAAGACCGCCTGGCACTTCGAGAAGAAGTACAACAACAAGAC
GGTCGCCTACGACATCTTCAAGCAATCGGTCACCGATCCCACCGTCTTCG
ATGAGTGCAACCTGGAACCGGAGACCAAGGAGGTCCTGTTGAGCAACATC
AAGCGGAAGCTGGTCTCGCCCACTGTCAAGATCCGTGCGGACATCGAGTG
CTCCTGCTACGGTTACGAGGGCATCGACGCTGTCAAGGCATCGCTCACCA
AGGGCCTGGAGCTGAGCACCGAGGAGCTGCCCATTCGCATCAACCTGATA
GCACCGCCACTCTATGTAATGACCACATCCACTACCAAGAAGACAGACGG
TTTAAAGGCTCTGGAGGTGGCCATTGAGCACATTCGCGCCAAGACCAGCG
AGTACGATGGAGAGTTCAAGGTGATCATGGCACCCAAACTGGTTACGGCC
ATCGACGAGGCGGATCTGGCCAGACGCCTGGAGCGCGCTGAGGCCGAGAA
CGCCCAGGTGGCTGGCGACGATGACGAGGAGGATGGCGCCGACCAGGAGG
GCATGCAGTTCGATCCAGAGAAGGAGTTCAACCACAAGGGATCGGGGGCG
GGTCGTGCGAACGAGGAGGATGAGGAGGAGGAAGAGGATGCAAGCTTTCT
AGACCAT

BO05910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2alpha-RB 1026 CG9946-PB 1..1023 17..1039 5115 100 Plus
eIF-2alpha-RA 1026 CG9946-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2alpha-RB 1519 CG9946-RB 113..1137 15..1039 5125 100 Plus
eIF-2alpha-RA 1200 CG9946-RA 113..1137 15..1039 5125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16446178..16446881 718..15 3490 99.7 Minus
X 23542271 X 16445558..16445885 1039..712 1640 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:12:32 has no hits.

BO05910.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:58 Download gff for BO05910.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 1..1026 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:55:08 Download gff for BO05910.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 94..1122 15..1045 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:50 Download gff for BO05910.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 115..1137 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:58 Download gff for BO05910.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 94..1122 15..1045 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:19 Download gff for BO05910.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2alpha-RA 115..1137 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:19 Download gff for BO05910.complete
Subject Subject Range Query Range Percent Splice Strand
X 16445554..16445885 712..1041 99 <- Minus
X 16446185..16446879 17..711 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:50 Download gff for BO05910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16339587..16339918 712..1041 99 <- Minus
arm_X 16340218..16340912 17..711 100   Minus

BO05910.pep Sequence

Translation from 16 to 1057

> BO05910.pep
MALTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSEL
SRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTER
FAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDI
FKQSVTDPTVFDECNLEPETKEVLLSNIKRKLVSPTVKIRADIECSCYGY
EGIDAVKASLTKGLELSTEELPIRINLIAPPLYVMTTSTTKKTDGLKALE
VAIEHIRAKTSEYDGEFKVIMAPKLVTAIDEADLARRLERAEAENAQVAG
DDDEEDGADQEGMQFDPEKEFNHKGSGAGRANEEDEEEEEDASFLDH

BO05910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2alpha-PB 341 CG9946-PB 1..341 1..341 1731 100 Plus
eIF-2alpha-PA 341 CG9946-PA 1..341 1..341 1731 100 Plus