Clone Sequence Records
BO05915.3prime Sequence
937 bp (853 high quality bases) assembled on 2005-12-02
> BO05915.3prime
ATGGTCTAGAAAGCTTGCGTGGAGACAGTAGGCCACGATTAGGGTCACCA
CCGTGGAGATGAAGCTAAAGTGTCCAAAAGTTCGCTCTGCCATACTATGC
GCATCCTTGACGATAGATTCCGCCGAGAGTCGAGCCTGTGTCAGACCCGG
CATCTTCATAATATCGGGCTGACCACCGGGAACTATGGGTGCCAATGGTA
CAGATCCCTCGGGAATGGCCACAGGAGTGGTCGGCTGAATGGGAGCCAGT
TGAACGGATTCGGGAGCGGAAACGGGAGGGGGTACTGCACCCTCCACGGC
TGGTGCCGTTCCATTGGCTGGAGTAGCAGTCTCCGGTGGCGGTGCTGGAT
AGCACGCGATCTGATCCAACTCAATAGTCTTGGTAGGATCTTTAGGATCC
GGACCGGGCACTTTAACGGGCACACAGATGATGCCACCACCAGGTGGTGC
ATTGGGATCAGCAGGGGCTCCAGGTGCAGGAGGGACTGGCGCGTTTGGAT
CCGCCGGATTGGGTGCAACTGCGGGTGCAGGAGCCACAGGAGATCCGGGT
GCAACAGGAGCTCCAGAAGCAGATACAGGTGCCGCTGGATCAACGGGAGC
AGGTGGCGATGGACCTAGAGGCGCCAGTGGAACTGATCCTGCAACTGGGG
CTGGAGGAACGGGTAGAGCTTGAGAGTCAGTAACAGGTGGAGCGGCATAA
ACAGGTGGCACTGGCACAGCTGGAGAAGCGGCTGCTTGGTTTCCTCCAGC
ATTTATCACCGTAGTACCCGATCCCACATCTGTGGTGGTCACAGATCCAG
GTGGTCCGTTATTGATAATGATGATTTTGTCGTCACCACCATGGGTGCCT
CCGCCTCCCCACACGCCGGGAATAGAATTGGAACTCTCCACACACGCGTG
TGGGTGGGTGTCAGTGCGTGACCCANGATGGCACACC
BO05915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31705-PA | 2049 | CG31705-RA | 1207..2046 | 858..19 | 4200 | 100 | Minus |
CG31705-PB | 2049 | CG31705-RB | 1207..2046 | 858..19 | 4200 | 100 | Minus |
CG31705-PC | 2049 | CG31705-RC | 1207..2046 | 858..19 | 4200 | 100 | Minus |
CG31705-PA | 2049 | CG31705-RA | 1130..1173 | 934..891 | 201 | 97.7 | Minus |
CG31705-PB | 2049 | CG31705-RB | 1130..1173 | 934..891 | 201 | 97.7 | Minus |
CG31705-PC | 2049 | CG31705-RC | 1130..1173 | 934..891 | 201 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31705-RE | 2664 | CG31705-RE | 1216..2132 | 934..19 | 4459 | 99.3 | Minus |
CG31705-RD | 2477 | CG31705-RD | 1312..2228 | 934..19 | 4459 | 99.3 | Minus |
CG31705-RA | 2381 | CG31705-RA | 1216..2132 | 934..19 | 4459 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11523553..11524469 | 19..934 | 4419 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:56:21 has no hits.
BO05915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:39 Download gff for
BO05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-PB | 1126..2049 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:28 Download gff for
BO05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-PC | 1126..2049 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:20 Download gff for
BO05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-RA | 1212..2135 | 15..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:29 Download gff for
BO05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-RA | 1212..2135 | 15..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:29 Download gff for
BO05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11523550..11524473 | 15..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:20 Download gff for
BO05915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11523550..11524473 | 15..937 | 99 | | Plus |
BO05915.5prime Sequence
958 bp (875 high quality bases) assembled on 2005-12-02
> BO05915.5prime
GAAGTTATCAGTCGACATGACCACTTACCCGACGCGGTTCAGTGGCAGCC
TGCTGGTGGTGGTGCTCCTAATATTGGCCCTGACCACCGAGGATGCGCAT
GCCAAATGGAAGTCCACTGGCAGCAGAAGTCGCACCAGTTCCTCTTCTAA
CAGAAGGACCTCCTCACACAGCTACTCTGCGCCATCGCATTCAGTCCCAT
CGCACCACGCAGCTCCTGCTCCACACCATGATAATGTCAGGCTGAGCTAC
GGAGGTGGATCCCACTCGCAGCCGGTGAGCAAGGTGAGCAGCTCCCAAAC
GCACAGTGCGGCTCCTTCGGCACCCGCGTCACCAATTGGCTGGAATGTCC
CAGCAAAGCCCCAAGGACCTCCGCCGGCGTACTCAGCCTCGAATCCAGTG
GGCGGAGCTCACACCAACATACATGAGCGTCCGCCAGCCTACAACCCGGC
ATACAAGCCAGCTCCACCTAGCTATTCGGCTGCCACCCAAACGCACAGCA
ACACGAATCTCCAGAGCCCATATCGTCCAGCAGGAGCAGCCAGTCCTGGT
GCCAGTTCCAGTTCAAGTGGTTCCCACTACTATGGCGGAGCACACAACAC
AGCCTATAGAGGACGTAATAACTCCACTGGTGGATTTGGTTCCTCCGGTG
GATATCAGCCGATAACGGCCACCAATGCCCATAATGTGCAGTCCAGCTAT
CCTCGCCAACAGTTGCCAGCAGGTGCCACCTACCACCCGGCAGGTCAACT
TCCAGCCGGAGCCACCTACCACCCAGCCGGGCAAATTCCAGCCGGAGCCT
CATACCATCCGGCAGGTCAATTGCCGGCTGGTGCTTCTACCACCCAGCGG
GTCAAGTGCCCACGGAGCGACTACTACCCCACGGGTCAGGTTTCAGCCGG
TGCCAGCTACCATCCGTCGGGTGGATATCCCGCANGAGCATCTTACCATC
CAGTCGGA
BO05915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31705-PA | 2049 | CG31705-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
CG31705-PB | 2049 | CG31705-RB | 1..821 | 17..837 | 4105 | 100 | Plus |
CG31705-PC | 2049 | CG31705-RC | 1..821 | 17..837 | 4105 | 100 | Plus |
CG31705-PA | 2049 | CG31705-RA | 858..945 | 871..958 | 396 | 97.7 | Plus |
CG31705-PB | 2049 | CG31705-RB | 858..945 | 871..958 | 396 | 97.7 | Plus |
CG31705-PC | 2049 | CG31705-RC | 858..945 | 871..958 | 396 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31705-RE | 2664 | CG31705-RE | 83..1031 | 13..958 | 4629 | 99.4 | Plus |
CG31705-RA | 2381 | CG31705-RA | 83..1031 | 13..958 | 4629 | 99.4 | Plus |
CG31705-RD | 2477 | CG31705-RD | 183..1127 | 17..958 | 4624 | 99.5 | Plus |
CG31705-RE | 2664 | CG31705-RE | 822..931 | 716..825 | 220 | 80 | Plus |
CG31705-RA | 2381 | CG31705-RA | 822..931 | 716..825 | 220 | 80 | Plus |
CG31705-RE | 2664 | CG31705-RE | 786..895 | 752..860 | 195 | 79.1 | Plus |
CG31705-RA | 2381 | CG31705-RA | 786..895 | 752..860 | 195 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11524722..11525666 | 958..17 | 4549 | 99.5 | Minus |
2L | 23513712 | 2L | 11524822..11524931 | 825..716 | 220 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:06:48 has no hits.
BO05915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:40 Download gff for
BO05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-PB | 1..944 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:29 Download gff for
BO05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-PC | 1..944 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:45 Download gff for
BO05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-RA | 77..1030 | 7..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:01 Download gff for
BO05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-RA | 77..1030 | 7..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:01 Download gff for
BO05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11524723..11525670 | 9..957 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:45 Download gff for
BO05915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11524723..11525670 | 9..957 | 99 | | Minus |
BO05915.complete Sequence
2080 bp assembled on 2010-02-24
GenBank Submission: KX797372
> BO05915.complete
GAAGTTATCAGTCGACATGACCACTTACCCGACGCGGTTCAGTGGCAGCC
TGCTGGTGGTGGTGCTCCTAATATTGGCCCTGACCACCGAGGATGCGCAT
GCCAAATGGAAGTCCACTGGCAGCAGAAGTCGCACCAGTTCCTCTTCTAA
CAGAAGGACCTCCTCACACAGCTACTCTGCGCCATCGCATTCAGTCCCAT
CGCACCACGCAGCTCCTGCTCCACACCATGATAATGTCAGGCTGAGCTAC
GGAGGTGGATCCCACTCGCAGCCGGTGAGCAAGGTGAGCAGCTCCCAAAC
GCACAGTGCGGCTCCTTCGGCACCCGCGTCACCAATTGGCTGGAATGTCC
CAGCAAAGCCCCAAGGACCTCCGCCGGCGTACTCAGCCTCGAATCCAGTG
GGCGGAGCTCACACCAACATACATGAGCGTCCGCCAGCCTACAACCCGGC
ATACAAGCCAGCTCCACCTAGCTATTCGGCTGCCACCCAAACGCACAGCA
ACACGAATCTCCAGAGCCCATATCGTCCAGCAGGAGCAGCCAGTCCTGGT
GCCAGTTCCAGTTCAAGTGGTTCCCACTACTATGGCGGAGCACACAACAC
AGCCTATAGAGGACGTAATAACTCCACTGGTGGATTTGGTTCCTCCGGTG
GATATCAGCCGATAACGGCCACCAATGCCCATAATGTGCAGTCCAGCTAT
CCTCGCCAACAGTTGCCAGCAGGTGCCACCTACCACCCGGCAGGTCAACT
TCCAGCCGGAGCCACCTACCACCCAGCCGGGCAAATTCCAGCCGGAGCCT
CATACCATCCGGCAGGTCAATTGCCGGCTGGTGCTTCATACCACCCAGCG
GGTCAAGTGCCCCACGGAGCGACCTACTACCCCACGGGTCAGGTTCCAGC
CGGTGCCAGCTACCATCCGTCGGGTGGATATCCCGCAGGAGCATCTTACC
ATCCAGTCGGACAAGTGCCCCATGGAGCCACCTATTATCCACAAGGACCA
GTCGGCGGAGGTCTGCCCGCAGGAGCCACCTTCCTGCCCGCTGGCGGAGT
TTTGCCTGCAGGAGCTGTTTACTATCCACAGGCGCCGCAGAAGTCATCAT
CAGGCTTGGGATTGGGCACTGGTCTTATCGCTGGAGCATTGGGTGGTGCC
ATCCTGGGTCACGCACTGACACCCACCCACACGCGTGTGGTGGAGAGTTC
CAATTCTTATTCCGGCGGTGGTGGAGGCGGAGGCACCCATGGTGGTGACG
ACAAAATCATCATTATCAATAACGGACCACCTGGATCTGTGACCACCACA
GATGTGGGATCGGGTACTACGGTGATAAATGCTGGAGGAAACCAAGCAGC
CGCTTCTCCAGCTGTGCCAGTGCCACCTGTTTATGCCGCTCCACCTGTTA
CTGACTCTCAAGCTCTACCCGTTCCTCCAGCCCCAGTTGCAGGATCAGTT
CCACTGGCGCCTCTAGGTCCATCGCCACCTGCTCCCGTTGATCCAGCGGC
ACCTGTATCTGCTTCTGGAGCTCCTGTTGCACCCGGATCTCCTGTGGCTC
CTGCACCCGCAGTTGCACCCAATCCGGCGGATCCAAACGCGCCAGTCCCT
CCTGCACCTGGAGCCCCTGCTGATCCCAATGCACCACCTGGTGGTGGCAT
CATCTGTGTGCCCGTTAAAGTGCCCGGTCCGGATCCTAAAGATCCTACCA
AGACTATTGAGTTGGATCAGATCGCGTGCTATCCAGCACCGCCACCGGAG
ACTGCTACTCCAGCCAATGGAACGGCACCAGCCGTGGAGGGTGCAGTACC
CCCTCCCGTTTCCGCTCCCGAATCCGTTCAACTGGCTCCCATTCAGCCGA
CCACTCCTGTGGCCATTCCCGAGGGATCTGTACCATTGGCACCCATAGTT
CCCGGTGGTCAGCCCGATATTATGAAGATGCCGGGTCTGACACAGGCTCG
ACTCTCGGCGGAATCTATCGTCAAGGATGCGCATAGTATGGCAGAGCGAA
CTTTTGGACACTTTAGCTTCATCTCCACGGTGGTGACCCTAATCGTGGCC
TACTGTCTCCACGCAAGCTTTCTAGACCAT
BO05915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31705-RE | 2049 | CG31705-PE | 1..2046 | 17..2062 | 10230 | 100 | Plus |
CG31705-RD | 2049 | CG31705-PD | 1..2046 | 17..2062 | 10230 | 100 | Plus |
CG31705-RA | 2049 | CG31705-PA | 1..2046 | 17..2062 | 10230 | 100 | Plus |
CG31705-RE | 2049 | CG31705-PE | 700..809 | 752..861 | 220 | 80 | Plus |
CG31705-RE | 2049 | CG31705-PE | 736..845 | 716..825 | 220 | 80 | Plus |
CG31705-RD | 2049 | CG31705-PD | 700..809 | 752..861 | 220 | 80 | Plus |
CG31705-RD | 2049 | CG31705-PD | 736..845 | 716..825 | 220 | 80 | Plus |
CG31705-RE | 2049 | CG31705-PE | 697..860 | 821..984 | 205 | 75 | Plus |
CG31705-RE | 2049 | CG31705-PE | 805..968 | 713..876 | 205 | 75 | Plus |
CG31705-RD | 2049 | CG31705-PD | 697..860 | 821..984 | 205 | 75 | Plus |
CG31705-RD | 2049 | CG31705-PD | 805..968 | 713..876 | 205 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31705-RE | 2664 | CG31705-RE | 83..2132 | 13..2062 | 10235 | 100 | Plus |
CG31705-RA | 2381 | CG31705-RA | 83..2132 | 13..2062 | 10235 | 100 | Plus |
CG31705-RD | 2477 | CG31705-RD | 183..2228 | 17..2062 | 10230 | 100 | Plus |
CG31705-RE | 2664 | CG31705-RE | 786..895 | 752..861 | 220 | 80 | Plus |
CG31705-RE | 2664 | CG31705-RE | 822..931 | 716..825 | 220 | 80 | Plus |
CG31705-RA | 2381 | CG31705-RA | 786..895 | 752..861 | 220 | 80 | Plus |
CG31705-RA | 2381 | CG31705-RA | 822..931 | 716..825 | 220 | 80 | Plus |
CG31705-RE | 2664 | CG31705-RE | 783..946 | 821..984 | 205 | 75 | Plus |
CG31705-RE | 2664 | CG31705-RE | 891..1054 | 713..876 | 205 | 75 | Plus |
CG31705-RA | 2381 | CG31705-RA | 783..946 | 821..984 | 205 | 75 | Plus |
CG31705-RA | 2381 | CG31705-RA | 891..1054 | 713..876 | 205 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11524567..11525666 | 1116..17 | 5500 | 100 | Minus |
2L | 23513712 | 2L | 11523553..11524500 | 2062..1115 | 4740 | 100 | Minus |
2L | 23513712 | 2L | 11524822..11524931 | 825..716 | 220 | 80 | Minus |
2L | 23513712 | 2L | 11524858..11524967 | 861..752 | 220 | 80 | Minus |
2L | 23513712 | 2L | 11524699..11524862 | 876..713 | 205 | 75 | Minus |
2L | 23513712 | 2L | 11524807..11524970 | 984..821 | 205 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:28:54 has no hits.
BO05915.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:45 Download gff for
BO05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-RA | 83..2128 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:06 Download gff for
BO05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-RA | 87..2132 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:29:52 Download gff for
BO05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31705-RA | 87..2132 | 17..2064 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:29:52 Download gff for
BO05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11523551..11524499 | 1116..2064 | 99 | <- | Minus |
2L | 11524568..11525666 | 17..1115 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:06 Download gff for
BO05915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11523551..11524499 | 1116..2064 | 99 | <- | Minus |
arm_2L | 11524568..11525666 | 17..1115 | 100 | | Minus |
BO05915.pep Sequence
Translation from 16 to 2080
> BO05915.pep
MTTYPTRFSGSLLVVVLLILALTTEDAHAKWKSTGSRSRTSSSSNRRTSS
HSYSAPSHSVPSHHAAPAPHHDNVRLSYGGGSHSQPVSKVSSSQTHSAAP
SAPASPIGWNVPAKPQGPPPAYSASNPVGGAHTNIHERPPAYNPAYKPAP
PSYSAATQTHSNTNLQSPYRPAGAASPGASSSSSGSHYYGGAHNTAYRGR
NNSTGGFGSSGGYQPITATNAHNVQSSYPRQQLPAGATYHPAGQLPAGAT
YHPAGQIPAGASYHPAGQLPAGASYHPAGQVPHGATYYPTGQVPAGASYH
PSGGYPAGASYHPVGQVPHGATYYPQGPVGGGLPAGATFLPAGGVLPAGA
VYYPQAPQKSSSGLGLGTGLIAGALGGAILGHALTPTHTRVVESSNSYSG
GGGGGGTHGGDDKIIIINNGPPGSVTTTDVGSGTTVINAGGNQAAASPAV
PVPPVYAAPPVTDSQALPVPPAPVAGSVPLAPLGPSPPAPVDPAAPVSAS
GAPVAPGSPVAPAPAVAPNPADPNAPVPPAPGAPADPNAPPGGGIICVPV
KVPGPDPKDPTKTIELDQIACYPAPPPETATPANGTAPAVEGAVPPPVSA
PESVQLAPIQPTTPVAIPEGSVPLAPIVPGGQPDIMKMPGLTQARLSAES
IVKDAHSMAERTFGHFSFISTVVTLIVAYCLHASFLDH
BO05915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31705-PE | 682 | CG31705-PE | 1..682 | 1..682 | 3650 | 100 | Plus |
CG31705-PD | 682 | CG31705-PD | 1..682 | 1..682 | 3650 | 100 | Plus |
CG31705-PA | 682 | CG31705-PA | 1..682 | 1..682 | 3650 | 100 | Plus |
CG5273-PB | 469 | CG5273-PB | 25..430 | 159..618 | 514 | 34.8 | Plus |
CG5273-PC | 469 | CG5273-PC | 25..430 | 159..618 | 514 | 34.8 | Plus |
CG5273-PB | 469 | CG5273-PB | 36..434 | 32..500 | 384 | 32.8 | Plus |