Clone Sequence Records
BO05924.3prime Sequence
877 bp (774 high quality bases) assembled on 2005-12-02
> BO05924.3prime
ATGGTCTAGAAAGCTTGCTTCGATCTTGATGCGGCGACCATATCGCCAGG
CCAGTCGCACCAGATCTCGATGAGCCAACGCCCAGGACAGAAGGCAGGCG
AGCCCAGCCAGGACACCCACGCCCAGATGTGTGGCAAGGTCAGAACTTTG
GTACCAATAACAGACGATGCCGGCCAGGAAGAGCGTGCATCCAAAGAGTT
TTCCCGGCCAGAGGCCCAGCAACGGATCCAGCGACAGGGGCCGATACTGA
TGCCTGATGTAGTAGGTGCTGTACAGAATCCTGCTCAGCATATTAATGCA
GTTGGCGAAGATGAAGCCCACCGGACCAAAGATCCCCGTCAAAATGTAGG
AGAGCACCAGGAAGCTGACCGAAAAGATGGCCATCAGATAGTTGTACTTG
TCGATATCTCGACTTGTGTTCGTGGCGAACATATAGCCCTCGCTGATCCC
GTTCACCGCCAGCAGATAGATCGCAAGGCAGTGCCACTGCAAGAGGCTCT
GCGGCAATCCGCCAGCCACGAAATCAGGACCGCCGTAAAGCAGCAGCACT
GGGTACGAGTAGCTCTGTCCAAAGGTGAAGGCGATCAGGCCAATGGAGCT
CACACCCAAGAGCAGATTATTCAGGACACTGCTCGCCTGACGGACGCGCT
CCTGCGGCTGCTTGGCCAGCTTGATGTCCCGGGATAGCGTCTGCGTGAAG
TAAAAGTACGAACTGTCCTCGATGGGTCGGAAGATGAAGCGGGCCGCCAT
GCTGCCCAAATTGTTGACCACATCGTAAGTGGCCTGCTCCCCGAAGCTCA
GCACCGGCGACACGGACATCACGTACTTCTCGCCCTCGGTGAGGGATTGC
TTCAGCACGCCCTGCTTCACAAAGCTG
BO05924.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3149-PA | 1671 | CG3149-RA | 810..1668 | 877..19 | 4220 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3149-RA | 2020 | CG3149-RA | 950..1808 | 877..19 | 4250 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5693361..5694084 | 154..877 | 3575 | 99.6 | Plus |
X | 23542271 | X | 5693157..5693292 | 19..154 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:55:05 has no hits.
BO05924.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:54 Download gff for
BO05924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-PA | 810..1671 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:46 Download gff for
BO05924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-PA | 810..1671 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:32 Download gff for
BO05924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 950..1808 | 19..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:43 Download gff for
BO05924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 950..1808 | 19..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:43 Download gff for
BO05924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5693157..5693291 | 19..153 | 100 | <- | Plus |
X | 5693361..5694084 | 154..877 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:32 Download gff for
BO05924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5587190..5587324 | 19..153 | 100 | <- | Plus |
arm_X | 5587394..5588117 | 154..877 | 99 | | Plus |
BO05924.5prime Sequence
869 bp (702 high quality bases) assembled on 2005-12-02
> BO05924.5prime
GAAGTTATCAGTCGACATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGG
GCGCCGGCTTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTC
GGCATCAACGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCAT
TATGAATGTCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCC
GCGAGGCCATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGAT
CGCTGCTCCTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCAT
TTGCGCTGTTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGT
CGGCGGTGGACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCC
GTGGCCTTTTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGT
CGCCCAGGTCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGC
ACATCCTGGTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGC
AGTGCGGCAATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGAC
CATTGTCCTGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCA
AGGATTTCGTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCC
TGGCAGGTCTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCT
GAGCGACTTCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCA
ACCGGGAACTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGTGCTG
AAGCAAATCCTCACCGAGG
BO05924.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3149-PA | 1671 | CG3149-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3149-RA | 2020 | CG3149-RA | 141..993 | 17..869 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5694041..5694622 | 869..288 | 2895 | 99.8 | Minus |
X | 23542271 | X | 5694691..5694908 | 292..75 | 1090 | 100 | Minus |
X | 23542271 | X | 5695006..5695065 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 14:55:43 has no hits.
BO05924.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:55 Download gff for
BO05924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-PA | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:48 Download gff for
BO05924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-PA | 1..853 | 17..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:35 Download gff for
BO05924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 136..993 | 11..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:52 Download gff for
BO05924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 136..993 | 11..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:52 Download gff for
BO05924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5694041..5694618 | 292..869 | 100 | <- | Minus |
X | 5694692..5694906 | 77..291 | 100 | <- | Minus |
X | 5695006..5695070 | 11..76 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:35 Download gff for
BO05924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5588074..5588651 | 292..869 | 100 | <- | Minus |
arm_X | 5588725..5588939 | 77..291 | 100 | <- | Minus |
arm_X | 5589039..5589103 | 11..76 | 96 | | Minus |
BO05924.complete Sequence
1702 bp (1702 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630201
> BO05924.complete
GAAGTTATCAGTCGACATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGG
GCGCCGGCTTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTC
GGCATCAACGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCAT
TATGAATGTCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCC
GCGAGGCCATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGAT
CGCTGCTCCTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCAT
TTGCGCTGTTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGT
CGGCGGTGGACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCC
GTGGCCTTTTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGT
CGCCCAGGTCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGC
ACATCCTGGTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGC
AGTGCGGCAATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGAC
CATTGTCCTGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCA
AGGATTTCGTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCC
TGGCAGGTCTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCT
GAGCGACTTCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCA
ACCGGGAACTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGTGCTG
AAGCAAATCCTCACCGAGGGCGAGAAGTACGTGATGTCCGTGTCGCCGGT
GCTGAGCTTCGGGGAGCAGGCCACCTACGATGTGGTCAACAATTTGGGCA
GCATGGCGGCCCGCTTCATCTTCCGACCCATCGAGGACAGTTCGTACTTT
TACTTCACGCAGACGCTATCCCGGGACATCAAGCTGGCCAAGCAGCCGCA
GGAGCGCGTCCGTCAGGCGAGCAGTGTCCTGAATAATCTGCTCTTGGGTG
TGAGCTCCATTGGCCTGATCGCCTTCACCTTTGGACAGAGCTACTCGTAC
CCAGTGCTGCTGCTTTACGGCGGTCCTGATTTCGTGGCTGGCGGATTGCC
GCAGAGCCTCTTGCAGTGGCACTGCCTTGCGATCTATCTGCTGGCGGTGA
ACGGGATCAGCGAGGGCTATATGTTCGCCACGAACACAAGTCGAGATATC
GACAAGTACAACTATCTGATGGCCATCTTTTCGGTCAGCTTCCTGGTGCT
CTCCTACATTTTGACGGGGATCTTTGGTCCGGTGGGCTTCATCTTCGCCA
ACTGCATTAATATGCTGAGCAGGATTCTGTACAGCACCTACTACATCAGG
CATCAGTATCGGCCCCTGTCGCTGGATCCGTTGCTGGGCCTCTGGCCGGG
AAAACTCTTTGGATGCACGCTCTTCCTGGCCGGCATCGTCTGTTATTGGT
ACCAAAGTTCTGACCTTGCCACACATCTGGGCGTGGGTGTCCTGGCTGGG
CTCGCCTGCCTTCTGTCCTGGGCGTTGGCTCATCGAGATCTGGTGCGACT
GGCCTGGCGATATGGTCGCCGCATCAAGATCGAAGCAAGCTTTCTAGACC
AT
BO05924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3149-RA | 1671 | CG3149-PA | 1..1668 | 17..1684 | 8340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3149-RA | 2020 | CG3149-RA | 141..1808 | 17..1684 | 8340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5693361..5694622 | 1549..288 | 6295 | 99.9 | Minus |
X | 23542271 | X | 5694691..5694908 | 292..75 | 1090 | 100 | Minus |
X | 23542271 | X | 5693157..5693292 | 1684..1549 | 680 | 100 | Minus |
X | 23542271 | X | 5695006..5695065 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:37:27 has no hits.
BO05924.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:30 Download gff for
BO05924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 1..1671 | 17..1685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:35 Download gff for
BO05924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 137..1809 | 11..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:44 Download gff for
BO05924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 141..1808 | 17..1686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:31 Download gff for
BO05924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 137..1809 | 11..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:10 Download gff for
BO05924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3149-RA | 141..1808 | 17..1686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:10 Download gff for
BO05924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5693155..5693291 | 1550..1686 | 98 | <- | Minus |
X | 5693361..5694618 | 292..1549 | 100 | <- | Minus |
X | 5694692..5694906 | 77..291 | 100 | <- | Minus |
X | 5695006..5695065 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:44 Download gff for
BO05924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5587188..5587324 | 1550..1686 | 98 | <- | Minus |
arm_X | 5587394..5588651 | 292..1549 | 100 | <- | Minus |
arm_X | 5588725..5588939 | 77..291 | 100 | <- | Minus |
arm_X | 5589039..5589098 | 17..76 | 100 | | Minus |
BO05924.pep Sequence
Translation from 16 to 1702
> BO05924.pep
MARNVLESSLLGAGFSIIFQILCRILTFGINAYIVRHVGREVLGIMNVRL
LLLESTLLFLSREAINRAALSANAQQGDRCSWAQLINQMWLTVPICAVLC
APCLYIWLNWLSAVDAIYASQYEFACYAVAFSCVLELMAESAVFVAQVFC
FVKLKILLNTLHILVRSAIFLWIVTGDRSAAINAFAIAQLSSAVTIVLGQ
YGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLP
GVMFNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMSVSPVLSFGE
QATYDVVNNLGSMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQ
ASSVLNNLLLGVSSIGLIAFTFGQSYSYPVLLLYGGPDFVAGGLPQSLLQ
WHCLAIYLLAVNGISEGYMFATNTSRDIDKYNYLMAIFSVSFLVLSYILT
GIFGPVGFIFANCINMLSRILYSTYYIRHQYRPLSLDPLLGLWPGKLFGC
TLFLAGIVCYWYQSSDLATHLGVGVLAGLACLLSWALAHRDLVRLAWRYG
RRIKIEASFLDH
BO05924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3149-PA | 556 | CG3149-PA | 1..556 | 1..556 | 2871 | 100 | Plus |