Clone BO05924 Report

Search the DGRC for BO05924

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:59
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG3149-RA
Protein status:BO05924.pep: validated full length
Sequenced Size:1702

Clone Sequence Records

BO05924.3prime Sequence

877 bp (774 high quality bases) assembled on 2005-12-02

> BO05924.3prime
ATGGTCTAGAAAGCTTGCTTCGATCTTGATGCGGCGACCATATCGCCAGG
CCAGTCGCACCAGATCTCGATGAGCCAACGCCCAGGACAGAAGGCAGGCG
AGCCCAGCCAGGACACCCACGCCCAGATGTGTGGCAAGGTCAGAACTTTG
GTACCAATAACAGACGATGCCGGCCAGGAAGAGCGTGCATCCAAAGAGTT
TTCCCGGCCAGAGGCCCAGCAACGGATCCAGCGACAGGGGCCGATACTGA
TGCCTGATGTAGTAGGTGCTGTACAGAATCCTGCTCAGCATATTAATGCA
GTTGGCGAAGATGAAGCCCACCGGACCAAAGATCCCCGTCAAAATGTAGG
AGAGCACCAGGAAGCTGACCGAAAAGATGGCCATCAGATAGTTGTACTTG
TCGATATCTCGACTTGTGTTCGTGGCGAACATATAGCCCTCGCTGATCCC
GTTCACCGCCAGCAGATAGATCGCAAGGCAGTGCCACTGCAAGAGGCTCT
GCGGCAATCCGCCAGCCACGAAATCAGGACCGCCGTAAAGCAGCAGCACT
GGGTACGAGTAGCTCTGTCCAAAGGTGAAGGCGATCAGGCCAATGGAGCT
CACACCCAAGAGCAGATTATTCAGGACACTGCTCGCCTGACGGACGCGCT
CCTGCGGCTGCTTGGCCAGCTTGATGTCCCGGGATAGCGTCTGCGTGAAG
TAAAAGTACGAACTGTCCTCGATGGGTCGGAAGATGAAGCGGGCCGCCAT
GCTGCCCAAATTGTTGACCACATCGTAAGTGGCCTGCTCCCCGAAGCTCA
GCACCGGCGACACGGACATCACGTACTTCTCGCCCTCGGTGAGGGATTGC
TTCAGCACGCCCTGCTTCACAAAGCTG

BO05924.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-PA 1671 CG3149-RA 810..1668 877..19 4220 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-RA 2020 CG3149-RA 950..1808 877..19 4250 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5693361..5694084 154..877 3575 99.6 Plus
X 23542271 X 5693157..5693292 19..154 680 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:55:05 has no hits.

BO05924.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:54 Download gff for BO05924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-PA 810..1671 18..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:46 Download gff for BO05924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-PA 810..1671 18..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:32 Download gff for BO05924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 950..1808 19..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:43 Download gff for BO05924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 950..1808 19..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:43 Download gff for BO05924.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5693157..5693291 19..153 100 <- Plus
X 5693361..5694084 154..877 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:32 Download gff for BO05924.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5587190..5587324 19..153 100 <- Plus
arm_X 5587394..5588117 154..877 99   Plus

BO05924.5prime Sequence

869 bp (702 high quality bases) assembled on 2005-12-02

> BO05924.5prime
GAAGTTATCAGTCGACATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGG
GCGCCGGCTTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTC
GGCATCAACGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCAT
TATGAATGTCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCC
GCGAGGCCATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGAT
CGCTGCTCCTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCAT
TTGCGCTGTTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGT
CGGCGGTGGACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCC
GTGGCCTTTTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGT
CGCCCAGGTCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGC
ACATCCTGGTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGC
AGTGCGGCAATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGAC
CATTGTCCTGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCA
AGGATTTCGTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCC
TGGCAGGTCTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCT
GAGCGACTTCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCA
ACCGGGAACTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGTGCTG
AAGCAAATCCTCACCGAGG

BO05924.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-PA 1671 CG3149-RA 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-RA 2020 CG3149-RA 141..993 17..869 4265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5694041..5694622 869..288 2895 99.8 Minus
X 23542271 X 5694691..5694908 292..75 1090 100 Minus
X 23542271 X 5695006..5695065 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-10 14:55:43 has no hits.

BO05924.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:55 Download gff for BO05924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-PA 1..853 17..869 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:48 Download gff for BO05924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-PA 1..853 17..869 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:56:35 Download gff for BO05924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 136..993 11..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:52 Download gff for BO05924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 136..993 11..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:52 Download gff for BO05924.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5694041..5694618 292..869 100 <- Minus
X 5694692..5694906 77..291 100 <- Minus
X 5695006..5695070 11..76 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:56:35 Download gff for BO05924.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5588074..5588651 292..869 100 <- Minus
arm_X 5588725..5588939 77..291 100 <- Minus
arm_X 5589039..5589103 11..76 96   Minus

BO05924.complete Sequence

1702 bp (1702 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630201

> BO05924.complete
GAAGTTATCAGTCGACATGGCGCGCAATGTGCTCGAGAGCAGCCTGCTGG
GCGCCGGCTTCAGCATCATCTTTCAGATACTGTGCCGCATCCTCACTTTC
GGCATCAACGCGTACATCGTGCGACATGTGGGCCGCGAGGTGTTGGGCAT
TATGAATGTCCGACTGCTGCTTCTGGAGAGCACCCTGCTCTTCCTCTCCC
GCGAGGCCATCAACCGGGCGGCCCTGAGCGCCAATGCCCAGCAGGGCGAT
CGCTGCTCCTGGGCGCAGCTGATCAACCAGATGTGGCTCACGGTTCCCAT
TTGCGCTGTTTTGTGTGCTCCTTGCCTATACATTTGGCTAAACTGGCTGT
CGGCGGTGGACGCCATCTACGCCTCGCAATACGAGTTCGCCTGCTATGCC
GTGGCCTTTTCCTGCGTCCTGGAATTGATGGCCGAGTCCGCGGTGTTTGT
CGCCCAGGTCTTTTGCTTTGTCAAGCTTAAGATCCTGCTGAATACGCTGC
ACATCCTGGTGCGCTCGGCCATCTTCCTGTGGATTGTCACCGGTGATCGC
AGTGCGGCAATCAATGCATTTGCGATTGCCCAACTATCCAGCGCAGTGAC
CATTGTCCTGGGCCAATATGGCTTCTTTTACTTCTATCTGAAGGGCTTCA
AGGATTTCGTGACCCAGCAGGCGAAAAAGAAACCAGTGGCTCCAAAAGCC
TGGCAGGTCTCACTGTACGAGCACATGGATGACTTCCCCTTCAAGCAGCT
GAGCGACTTCCTGCCCGGCGTGATGTTCAATCCAAATGGAAAGCATTTCA
ACCGGGAACTGCAAACGCTAACCCTCAGCTTTGTGAAGCAGGGCGTGCTG
AAGCAAATCCTCACCGAGGGCGAGAAGTACGTGATGTCCGTGTCGCCGGT
GCTGAGCTTCGGGGAGCAGGCCACCTACGATGTGGTCAACAATTTGGGCA
GCATGGCGGCCCGCTTCATCTTCCGACCCATCGAGGACAGTTCGTACTTT
TACTTCACGCAGACGCTATCCCGGGACATCAAGCTGGCCAAGCAGCCGCA
GGAGCGCGTCCGTCAGGCGAGCAGTGTCCTGAATAATCTGCTCTTGGGTG
TGAGCTCCATTGGCCTGATCGCCTTCACCTTTGGACAGAGCTACTCGTAC
CCAGTGCTGCTGCTTTACGGCGGTCCTGATTTCGTGGCTGGCGGATTGCC
GCAGAGCCTCTTGCAGTGGCACTGCCTTGCGATCTATCTGCTGGCGGTGA
ACGGGATCAGCGAGGGCTATATGTTCGCCACGAACACAAGTCGAGATATC
GACAAGTACAACTATCTGATGGCCATCTTTTCGGTCAGCTTCCTGGTGCT
CTCCTACATTTTGACGGGGATCTTTGGTCCGGTGGGCTTCATCTTCGCCA
ACTGCATTAATATGCTGAGCAGGATTCTGTACAGCACCTACTACATCAGG
CATCAGTATCGGCCCCTGTCGCTGGATCCGTTGCTGGGCCTCTGGCCGGG
AAAACTCTTTGGATGCACGCTCTTCCTGGCCGGCATCGTCTGTTATTGGT
ACCAAAGTTCTGACCTTGCCACACATCTGGGCGTGGGTGTCCTGGCTGGG
CTCGCCTGCCTTCTGTCCTGGGCGTTGGCTCATCGAGATCTGGTGCGACT
GGCCTGGCGATATGGTCGCCGCATCAAGATCGAAGCAAGCTTTCTAGACC
AT

BO05924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-RA 1671 CG3149-PA 1..1668 17..1684 8340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-RA 2020 CG3149-RA 141..1808 17..1684 8340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5693361..5694622 1549..288 6295 99.9 Minus
X 23542271 X 5694691..5694908 292..75 1090 100 Minus
X 23542271 X 5693157..5693292 1684..1549 680 100 Minus
X 23542271 X 5695006..5695065 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:37:27 has no hits.

BO05924.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:30 Download gff for BO05924.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 1..1671 17..1685 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:35 Download gff for BO05924.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 137..1809 11..1684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:44 Download gff for BO05924.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 141..1808 17..1686 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:31 Download gff for BO05924.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 137..1809 11..1684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:10 Download gff for BO05924.complete
Subject Subject Range Query Range Percent Splice Strand
CG3149-RA 141..1808 17..1686 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:10 Download gff for BO05924.complete
Subject Subject Range Query Range Percent Splice Strand
X 5693155..5693291 1550..1686 98 <- Minus
X 5693361..5694618 292..1549 100 <- Minus
X 5694692..5694906 77..291 100 <- Minus
X 5695006..5695065 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:44 Download gff for BO05924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5587188..5587324 1550..1686 98 <- Minus
arm_X 5587394..5588651 292..1549 100 <- Minus
arm_X 5588725..5588939 77..291 100 <- Minus
arm_X 5589039..5589098 17..76 100   Minus

BO05924.pep Sequence

Translation from 16 to 1702

> BO05924.pep
MARNVLESSLLGAGFSIIFQILCRILTFGINAYIVRHVGREVLGIMNVRL
LLLESTLLFLSREAINRAALSANAQQGDRCSWAQLINQMWLTVPICAVLC
APCLYIWLNWLSAVDAIYASQYEFACYAVAFSCVLELMAESAVFVAQVFC
FVKLKILLNTLHILVRSAIFLWIVTGDRSAAINAFAIAQLSSAVTIVLGQ
YGFFYFYLKGFKDFVTQQAKKKPVAPKAWQVSLYEHMDDFPFKQLSDFLP
GVMFNPNGKHFNRELQTLTLSFVKQGVLKQILTEGEKYVMSVSPVLSFGE
QATYDVVNNLGSMAARFIFRPIEDSSYFYFTQTLSRDIKLAKQPQERVRQ
ASSVLNNLLLGVSSIGLIAFTFGQSYSYPVLLLYGGPDFVAGGLPQSLLQ
WHCLAIYLLAVNGISEGYMFATNTSRDIDKYNYLMAIFSVSFLVLSYILT
GIFGPVGFIFANCINMLSRILYSTYYIRHQYRPLSLDPLLGLWPGKLFGC
TLFLAGIVCYWYQSSDLATHLGVGVLAGLACLLSWALAHRDLVRLAWRYG
RRIKIEASFLDH

BO05924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3149-PA 556 CG3149-PA 1..556 1..556 2871 100 Plus