Clone Sequence Records
BO05926.3prime Sequence
685 bp (628 high quality bases) assembled on 2005-12-02
> BO05926.3prime
ATGGTCTAGAAAGCTTGCCTTGATCTTGATTTTATGCAGCTTCAGTTTAA
AGCCTAAAACTTCGCTAAGCACGCCCGATAGGGCCGACAGGATTACCACC
TTGATGGTTGTGAATAGATATGGATTGGCACTAAGGCCAGAGAGCTTGAA
TGGCGTTTCGAGTTCCTTTAGCAGATCGGCGGCCAGCTTGAGCACGCTGT
TCGACACCATCAGCTCGTCCTTTTTCTTTGGCTTCTGCTCGATCTGCAGA
TACAAGTTAATTTGCTCCGTAATCAGCACCGACACACTGCGGTACTTGTG
TTGTATCTTCTGACCTAGGGTCATGAAGCGCAGCAGAAAGATACCGATTG
TTATGGACCAGATTAGGGCCTCCAAGGTAAGGTGTGTGTGCAGATGAGCC
GAATCCTTCAGCCACTCGACGCTGAGGAAGGCCAGCAACAGGAGGGTTAC
TATGAAGGCGGCGGAAACGATGATATCCACCGATCGCTGGGGTCCGCGTT
TCTTCAAATACGACCTCACGCTCAGCCAGGTCTTGATGTTACGCACCTTG
TTCAAACGGAAGTGGGGAAGATTTGACTTTCGAGCCCTACGTGATGAAGT
TAGGTGGGAGAAGAGTTTGGCGTAAAGGAAGCGTTGCTTGAAGGTGCGCT
CTGCAACGGCGAATATTATGAACAGTATGAGGGTC
BO05926.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3268-PA | 2643 | phtf-RA | 1974..2640 | 685..19 | 3310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phtf-RA | 3336 | CG3268-RA | 2264..2930 | 685..19 | 3320 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6745251..6745735 | 503..19 | 2410 | 99.8 | Minus |
| 2R | 25286936 | 2R | 6745011..6745194 | 685..502 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:05:46 has no hits.
BO05926.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:58 Download gff for
BO05926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-PA | 1974..2643 | 15..685 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:51 Download gff for
BO05926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3268-PA | 1974..2643 | 15..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:44 Download gff for
BO05926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 2264..2936 | 12..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:35 Download gff for
BO05926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 2264..2936 | 12..685 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:35 Download gff for
BO05926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6745011..6745194 | 502..685 | 100 | -> | Minus |
| 2R | 6745253..6745741 | 12..501 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:44 Download gff for
BO05926.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2632516..2632699 | 502..685 | 100 | -> | Minus |
| arm_2R | 2632758..2633246 | 12..501 | 99 | | Minus |
BO05926.5prime Sequence
860 bp (781 high quality bases) assembled on 2005-12-02
> BO05926.5prime
GAAGTTATCAGTCGACATGAAATTGGATGAAATAGTTGCATGGTACCAGA
AGAGAATCGGCACCTATGACAAGCAAGAATGGGAAAAGACCGTCGAACAG
AGGATATTGGACGGCTTCAATAGTGTCAATTTAAAAAACACCAAGCTGAA
GACGGAGCTAATCGATGTGGACTTGGTGCGAGGTTCCACGTTCCCTAAGG
CCAAGCCCAAGCAGTCGTTACTCACTGTGATACGCCTGGCCATTCTGCGC
TATGTCCTGCTGCCCCTCTATGCCCAGTGGTGGGTCAAGCAGACCACGCC
AAACGCCTTCGGCTTCATCCTTGTGCTTTACCTCACACAGTTAACCAACT
GGGCTATCTACGTGCTTCACAGCAGTCGCATAGTGCCCCTTGACTATGAG
AAGCCGCCAAATGGAACCCTGCTTCAGGCAGAGGCAGATGGAGATGCCTC
CGATAAGGATGCAGATAAGGAGTCCGAGGAACATGCCGCCCTCCTCAGTG
CCCTGCTTATTCCGTGCGCCCTAAGCTTGCTGATCAGTCTCATCCACTCA
CAAATTGTAGCCACTAACACCGCCTCGGGTGTCTCTGGCGGGAGTAGCAA
GAACAAGCTGCGTCGCATATCTGCAAGCTACTTAAGCGACAAAGCAGCAA
CCAGGGAGAACCGGGTGCGACGTCGCAAGAAGATTGTGCGAGTTCGACAA
GTGGAGGCTGACTTGTCCCAGGCCAGCAGTAACATATCACTTCCAAACAG
AAGAACCCGCACCAGCACAATCGAAGTTCTTCCCAGACCGGTCACGCCTT
TGCCTTTCACAACAGTTACCTGTGCCACGGTGCCAGACCCCACCACGCCG
ACTACGCCTT
BO05926.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3268-PA | 2643 | phtf-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
| CG3268-PA | 2643 | phtf-RA | 794..844 | 810..860 | 255 | 100 | Plus |
| CG3268-PA | 2643 | phtf-RA | 745..790 | 761..806 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phtf-RA | 3336 | CG3268-RA | 291..1134 | 17..860 | 4130 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6743035..6743544 | 181..690 | 2550 | 100 | Plus |
| 2R | 25286936 | 2R | 6743592..6743762 | 690..860 | 765 | 96.5 | Plus |
| 2R | 25286936 | 2R | 6742840..6742982 | 42..184 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:07:17 has no hits.
BO05926.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:34:59 Download gff for
BO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:01:53 Download gff for
BO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3268-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:49 Download gff for
BO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 291..1134 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:42:43 Download gff for
BO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 291..1134 | 17..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:42:43 Download gff for
BO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6742841..6742980 | 43..182 | 100 | -> | Plus |
| 2R | 6742744..6742769 | 17..42 | 100 | -> | Plus |
| 2R | 6743037..6743544 | 183..690 | 100 | -> | Plus |
| 2R | 6743593..6743762 | 691..860 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:49 Download gff for
BO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2630249..2630274 | 17..42 | 100 | -> | Plus |
| arm_2R | 2630346..2630485 | 43..182 | 100 | -> | Plus |
| arm_2R | 2630542..2631049 | 183..690 | 100 | -> | Plus |
| arm_2R | 2631098..2631267 | 691..860 | 97 | | Plus |
BO05926.complete Sequence
2674 bp assembled on 2008-08-14
GenBank Submission: FJ630202
> BO05926.complete
GAAGTTATCAGTCGACATGAAATTGGATGAAATAGTTGCATGGTACCAGA
AGAGAATCGGCACCTATGACAAGCAAGAATGGGAAAAGACCGTCGAACAG
AGGATATTGGACGGCTTCAATAGTGTCAATTTAAAAAACACCAAGCTGAA
GACGGAGCTAATCGATGTGGACTTGGTGCGAGGTTCCACGTTCCCTAAGG
CCAAGCCCAAGCAGTCGTTACTCACTGTGATACGCCTGGCCATTCTGCGC
TATGTCCTGCTGCCCCTCTATGCCCAGTGGTGGGTCAAGCAGACCACGCC
AAACGCCTTCGGCTTCATCCTTGTGCTTTACCTCACACAGTTAACCAACT
GGGCTATCTACGTGCTTCACAGCAGTCGCATAGTGCCCCTTGACTATGAG
AAGCCGCCAAATGGAACCCTGCTTCAGGCAGAGGCAGATGGAGATGCCTC
CGATAAGGATGCAGATAAGGAGTCCGAGGAACATGCCGCCCTCCTCAGTG
CCCTGCTTATTCCGTGCGCCCTAAGCTTGCTGATCAGTCTCATCCACTCA
CAAATTGTAGCCACTAACACCGCCTCGGGTGTCTCTGGCGGGAGTAGCAA
GAACAAGCTGCGTCGCATATCTGCAAGCTACTTAAGCGACAAAGCAGCAA
CCAGGGAGAACCGGGTGCGACGTCGCAAGAAGATTGTGCGAGTTCGACAA
GTGGAGGCTGACTTGTCCCAGGCCAGCAGTAACATATCACTTCCAAACAG
AAGAACCGCAACCAGCACAATCGAAGTTCTTCCCAGACCGGTCACGCCTT
TGCCTTCACCAACAGTTACCTGTGCCACGGTGCCAGACCCCACCACGCCG
ACTACGCCTTCGCCATCTGTTATCAGGCGGAGCACCAACGAGGAGACCTA
TTTGACAACGACTGCAATCAGCCCACTAACGCAACCGCTGGCAGCCATAG
ACGCATGCTACGATCTCAGCAGAAAGGCAGGGGGAGCTGCTCCCGAAAGC
CCCAAAAAGCGCAACGTCAACTGGCACACGCCTATTCAGATATACGCTAC
CTACGAGCTGGGCGAAGAGCCGTGCTCCAGCAGAAAAGTCGCAGAAGAAA
GTGCGCCTGAGTCGGTTGGAGAAAGATTGTGTTCCGTCAAGCCAGACTAC
CAGACGCGTCGAAACATCGGGGAGGACGATGGCTTCGAGAGTCTGAATGG
AAAGAGCTCAAGTGGAGAGGACAACAACCATTCGCCTTTGCCAAACGCGG
TGGCTGTTGCGGCTCCACCAGCTCCTGTTCAGACCAATCAGTTGCGTCTG
CGATTAAACACAACAAACGGTGTGACCGCCAGTGCTTCTCCAACCGAGAA
GAAACCCCAGTCGCGCGGCAATGAATCCTCAACGAGTTGCGCCGAATCGG
ATGAGTGCGATGATGCCGACATTATGTCCAGTCCCGCCTCGGGCTGTAAC
CAAGAGTGCACCACTTCTGCCACCGACTGGCTGGGGGTGACGACAAATAG
CGAAGACTGCAGTTACACCTCTGATCTGGATCACTCTGACGGGGGCTTGA
AGCACACGGCCTTTAGCGACGAAGATCCTGGAGAGCTGGACATCACCCCT
ACCACTATACTAAATCCACATAGCAGCCTCGACCGTATTAGCTGCACCAT
TTGGGATCAGCGAGATGCCAAAAAGGCGCAGCTTTCCGTGCTGGAGATCG
CGTCTTGCATAATCGAACGCGTGGACTCAATGGGCGAGGCCAACGACTAC
ATCTACATAGGCGTGGTCTTCTCTTTCCTGCTCACATTGATTCCCATCTT
CTGCCGTCTCTGCGAGGTCACACTCGGGAGCGATGCAGAGAAGGCCAGTG
AGATTAGCTACTTTAACATGCCGCAGCTGCTGTGGGAGAAGTCATCGGCA
TCGCTCTTCACCCTGCTGGGCCTTGCCTTCGGCGACAGCCAGTGGGAGCG
CATGGTATTGGCTCTGGGCTTTGTCCAACGCCTTTGCCTGACCCTCATAC
TGTTCATAATATTCGCCGTTGCAGAGCGCACCTTCAAGCAACGCTTCCTT
TACGCCAAACTCTTCTCCCACCTAACTTCATCACGTAGGGCTCGAAAGTC
AAATCTTCCCCACTTCCGTTTGAACAAGGTGCGTAACATCAAGACCTGGC
TGAGCGTGAGGTCGTATTTGAAGAAACGCGGACCCCAGCGATCGGTGGAT
ATCATCGTTTCCGCCGCCTTCATAGTAACCCTCCTGTTGCTGGCCTTCCT
CAGCGTCGAGTGGCTGAAGGATTCGGCTCATCTGCACACACACCTTACCT
TGGAGGCCCTAATCTGGTCCATAACAATCGGTATCTTTCTGCTGCGCTTC
ATGACCCTAGGTCAGAAGATACAACACAAGTACCGCAGTGTGTCGGTGCT
GATTACGGAGCAAATTAACTTGTATCTGCAGATCGAGCAGAAGCCAAAGA
AAAAGGACGAGCTGATGGTGTCGAACAGCGTGCTCAAGCTGGCCGCCGAT
CTGCTAAAGGAACTCGAAACGCCATTCAAGCTCTCTGGCCTTAGTGCCAA
TCCATATCTATTCACAACCATCAAGGTGGTAATCCTGTCGGCCCTATCGG
GCGTGCTTAGCGAAGTTTTAGGCTTTAAACTGAAGCTGCATAAAATCAAG
ATCAAGGCAAGCTTTCTAGACCAT
BO05926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phtf-RA | 2643 | CG3268-PA | 1..2640 | 17..2656 | 13185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phtf-RA | 3336 | CG3268-RA | 291..2930 | 17..2656 | 13185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6743592..6744539 | 690..1637 | 4740 | 100 | Plus |
| 2R | 25286936 | 2R | 6743035..6743544 | 181..690 | 2550 | 100 | Plus |
| 2R | 25286936 | 2R | 6745251..6745735 | 2172..2656 | 2410 | 99.8 | Plus |
| 2R | 25286936 | 2R | 6744836..6745194 | 1815..2173 | 1795 | 100 | Plus |
| 2R | 25286936 | 2R | 6744599..6744779 | 1638..1818 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 6742840..6742982 | 42..184 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:59 has no hits.
BO05926.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:21 Download gff for
BO05926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 323..2968 | 17..2663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:33 Download gff for
BO05926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 291..2930 | 17..2658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:19 Download gff for
BO05926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 323..2962 | 17..2658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:11 Download gff for
BO05926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phtf-RA | 291..2930 | 17..2658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:11 Download gff for
BO05926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6742841..6742980 | 43..182 | 100 | -> | Plus |
| 2R | 6742744..6742769 | 17..42 | 100 | -> | Plus |
| 2R | 6743037..6743544 | 183..690 | 100 | -> | Plus |
| 2R | 6743593..6744539 | 691..1637 | 100 | -> | Plus |
| 2R | 6744599..6744777 | 1638..1816 | 100 | -> | Plus |
| 2R | 6744838..6745194 | 1817..2173 | 100 | -> | Plus |
| 2R | 6745253..6745735 | 2174..2658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:33 Download gff for
BO05926.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2630249..2630274 | 17..42 | 100 | -> | Plus |
| arm_2R | 2630346..2630485 | 43..182 | 100 | -> | Plus |
| arm_2R | 2630542..2631049 | 183..690 | 100 | -> | Plus |
| arm_2R | 2631098..2632044 | 691..1637 | 100 | -> | Plus |
| arm_2R | 2632104..2632282 | 1638..1816 | 100 | -> | Plus |
| arm_2R | 2632343..2632699 | 1817..2173 | 100 | -> | Plus |
| arm_2R | 2632758..2633240 | 2174..2658 | 99 | | Plus |
BO05926.pep Sequence
Translation from 16 to 2674
> BO05926.pep
MKLDEIVAWYQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELID
VDLVRGSTFPKAKPKQSLLTVIRLAILRYVLLPLYAQWWVKQTTPNAFGF
ILVLYLTQLTNWAIYVLHSSRIVPLDYEKPPNGTLLQAEADGDASDKDAD
KESEEHAALLSALLIPCALSLLISLIHSQIVATNTASGVSGGSSKNKLRR
ISASYLSDKAATRENRVRRRKKIVRVRQVEADLSQASSNISLPNRRTATS
TIEVLPRPVTPLPSPTVTCATVPDPTTPTTPSPSVIRRSTNEETYLTTTA
ISPLTQPLAAIDACYDLSRKAGGAAPESPKKRNVNWHTPIQIYATYELGE
EPCSSRKVAEESAPESVGERLCSVKPDYQTRRNIGEDDGFESLNGKSSSG
EDNNHSPLPNAVAVAAPPAPVQTNQLRLRLNTTNGVTASASPTEKKPQSR
GNESSTSCAESDECDDADIMSSPASGCNQECTTSATDWLGVTTNSEDCSY
TSDLDHSDGGLKHTAFSDEDPGELDITPTTILNPHSSLDRISCTIWDQRD
AKKAQLSVLEIASCIIERVDSMGEANDYIYIGVVFSFLLTLIPIFCRLCE
VTLGSDAEKASEISYFNMPQLLWEKSSASLFTLLGLAFGDSQWERMVLAL
GFVQRLCLTLILFIIFAVAERTFKQRFLYAKLFSHLTSSRRARKSNLPHF
RLNKVRNIKTWLSVRSYLKKRGPQRSVDIIVSAAFIVTLLLLAFLSVEWL
KDSAHLHTHLTLEALIWSITIGIFLLRFMTLGQKIQHKYRSVSVLITEQI
NLYLQIEQKPKKKDELMVSNSVLKLAADLLKELETPFKLSGLSANPYLFT
TIKVVILSALSGVLSEVLGFKLKLHKIKIKASFLDH
BO05926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phtf-PA | 880 | CG3268-PA | 1..880 | 1..880 | 4482 | 100 | Plus |
