Clone BO05931 Report

Search the DGRC for BO05931

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:59
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptpgant3-RA
Protein status:BO05931.pep: Imported from assembly
Sequenced Size:2035

Clone Sequence Records

BO05931.3prime Sequence

940 bp (893 high quality bases) assembled on 2005-12-02

> BO05931.3prime
ATGGTCTAGAAAGCTTGCCATGCGCCATGGCAGTGGTATGAAGCCCCACT
TCTGTGTGATGTCTTTGAAGTCGCATTCCATACTGAGCACAACCTTCTCG
ACCTTTTGGAGACGCGAGTTAGTCGCCGCTTTCAGAGTAAGGCAGAGCTT
TGTGTCCCTATGAGATATTTGCTGAGTATCCATGTCGTAGGTCCACAACT
GACTCGAGTCGGAAGCGCACTGCGCCAGCATTACATTCGAAGTGGTGGCG
TTGCGGTTCTTTAGCATCTTGATCACACCCAGCTTTTGCTGTCGATAGGT
CAGGCAGACGTTGTCGTTAGTCATGATCTGGCCCTTCGGAGTTATTACAA
ACATATCCATCGACTGGGCGTGAGATGTGCAATCGCCTACGGTTACTGCA
GACAATGATGAGCGCGGCACATCCTCTTTGAGGGGGCGAAGGCACTTGTC
CCGCTCCAGATCGATCAGCGCCATCAGCTCCTCCGCCTTGCTGTCGATTT
CCTCGAACGCTCGCTTCCACTCTCGTGACAAAGCACGACCTGGTAGGTTC
TTCATGTGCTTGCTGTAGGCCTGGGCACATTCTGTCTCCCCGTCCAGCCA
TATGATCTTGCCGAAAAAGCGGTCGGGAGCTGGAAAGAAGTGCTCTGGCC
ATATGTTCTCCAGATACCAGGAGAACGGTTTGCACTGGAGCCTCTCCCTG
AGCGCCACACGCTCCGTAACATTCACCTTGTCCTTGGCTCCCAGCGTCAG
TCCAGAGGTGTACAGCATTATAAAGTACTGCCAATCGTCCATCCAGACGG
TGGCGGCCCTGGCCAAATTATCCGTGAGAACCTCGCTCATGCCGCCGGGG
AAGGTGTAGGGCGTGCTGCTGCGGAACACGTGACCCACGTGCGAGCAGGN
ACTGATCTCCACACGACCCGCGCACTGCCAAATGCGGAAG

BO05931.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4445-PA 2004 pgant3-RA 1080..2001 940..19 4541 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
pgant3-RA 2884 CG4445-RA 1456..2377 940..19 4569 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7058377..7059139 178..940 3774 99.6 Plus
2R 25286936 2R 7058161..7058319 19..177 795 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:07:44 has no hits.

BO05931.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:07 Download gff for BO05931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4445-PA 1080..2004 18..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:04 Download gff for BO05931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4445-PA 1080..2004 18..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:51 Download gff for BO05931.3prime
Subject Subject Range Query Range Percent Splice Strand
pgant3-RA 1475..2396 19..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:16 Download gff for BO05931.3prime
Subject Subject Range Query Range Percent Splice Strand
pgant3-RA 1456..2377 19..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:16 Download gff for BO05931.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7058161..7058319 19..177 100 <- Plus
2R 7058377..7059139 178..940 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:51 Download gff for BO05931.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2945666..2945824 19..177 100 <- Plus
arm_2R 2945882..2946644 178..940 99   Plus

BO05931.5prime Sequence

921 bp (872 high quality bases) assembled on 2005-12-02

> BO05931.5prime
GAAGTTATCAGTCGACATGGGTCTCCGGTTCCAGCAGCTGAAGAAGCTCT
GGCTGCTCTACCTTTTCCTGCTCTTCTTCGCGTTCTTCATGTTCGCCATC
AGCATCAACCTGTACGTGGCCAGCATCCAGGGCGGGGACGCGGAGATGCG
TCATCCGAAACCGCCGCCCAAGCGCCGCTCCCTCTGGCCGCACAAAAACA
TCGTGGCCCACTACATCGGCAAGGGAGACATCTTTGGCAACATGACAGCA
GATGATTACAACATCAACCTGTTCCAGCCCATCAACGGAGAAGGTGCCGA
TGGGCGACCAGTTGTGGTGCCGCCTCGCGATCGCTTTCGCATGCAGCGCT
TTTTCCGGCTAAACAGCTTCAACCTGCTGGCCAGCGACCGCATCCCACTG
AACCGCACCCTCAAGGACTACCGCACACCTGAATGCCGCGACAAGAAGTA
CGCCAGCGGTCTACCCAGCACGTCGGTTATAATTGTTTTCCACAACGAGG
CCTGGTCCGTGCTCCTGCGAACCATCACCAGCGTCATCAACCGGTCGCCG
CGCCACCTGCTTAAGGAAATTATCCTGGTGGACGATGCCAGCGATCGCTC
ATATTTAAAACGTCAACTGGAGAGCTATGTGAAAGTGCTGGCGGTACCCA
CGAGGATCTTTCGCATGAAGAAGCGAAGTGGCTTAGTGCCTGCCCGCCTT
TTGGGAGCCGAAAATGCTCGCGGCGATGTGCTGACCTTCCTCGACGCCCA
CTGCGAGTGCTCGCGGGGATGGCTGGAACCACTTCTTTCCCGCATTAAGG
AATCACGCAAGGTGGTAATCTGCCCGGTAATCGACATAATATCCGATGAC
AACTTTAGCTACACAAAAACCTTCGAGAACCACTGGGGCGCTTTCAACTG
GCAGCTGAGCTTCCGTGGTTC

BO05931.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4445-PA 2004 pgant3-RA 1..900 17..916 4500 100 Plus
CG31651-PB 1893 pgant5-RB 658..689 563..594 135 96.8 Plus
CG31651-PA 1893 pgant5-RA 658..689 563..594 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
pgant3-RA 2884 CG4445-RA 377..1282 17..921 4505 99.9 Plus
pgant5-RA 4364 CG31651-RA 1338..1447 485..594 190 78.2 Plus
pgant5-RB 4340 CG31651-RB 1314..1423 485..594 190 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7059319..7059635 916..600 1585 100 Minus
2R 25286936 2R 7060283..7060467 432..248 925 100 Minus
2R 25286936 2R 7060057..7060223 599..433 835 100 Minus
2R 25286936 2R 7061223..7061356 150..17 670 100 Minus
2R 25286936 2R 7060812..7060917 255..150 515 99.1 Minus
2L 23513712 2L 5078239..5078348 594..485 190 78.2 Minus
Blast to na_te.dros performed on 2015-02-11 16:06:19 has no hits.

BO05931.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:08 Download gff for BO05931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4445-PA 1..906 17..921 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:06 Download gff for BO05931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4445-PA 1..906 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:48 Download gff for BO05931.5prime
Subject Subject Range Query Range Percent Splice Strand
pgant3-RA 391..1301 9..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:45 Download gff for BO05931.5prime
Subject Subject Range Query Range Percent Splice Strand
pgant3-RA 372..1282 9..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:45 Download gff for BO05931.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7059313..7059635 600..921 99 <- Minus
2R 7060057..7060223 433..599 100 <- Minus
2R 7060283..7060463 252..432 100 <- Minus
2R 7060816..7060916 151..251 100 <- Minus
2R 7061223..7061361 9..150 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:48 Download gff for BO05931.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2946818..2947140 600..921 99 <- Minus
arm_2R 2947562..2947728 433..599 100 <- Minus
arm_2R 2947788..2947968 252..432 100 <- Minus
arm_2R 2948321..2948421 151..251 100 <- Minus
arm_2R 2948728..2948866 9..150 97   Minus

BO05931.complete Sequence

2035 bp assembled on 2010-02-24

GenBank Submission: KX800122

> BO05931.complete
GAAGTTATCAGTCGACATGGGTCTCCGGTTCCAGCAGCTGAAGAAGCTCT
GGCTGCTCTACCTTTTCCTGCTCTTCTTCGCGTTCTTCATGTTCGCCATC
AGCATCAACCTGTACGTGGCCAGCATCCAGGGCGGGGACGCGGAGATGCG
TCATCCGAAACCGCCGCCCAAGCGCCGCTCCCTCTGGCCGCACAAAAACA
TCGTGGCCCACTACATCGGCAAGGGAGACATCTTTGGCAACATGACAGCA
GATGATTACAACATCAACCTGTTCCAGCCCATCAACGGAGAAGGTGCCGA
TGGGCGACCAGTTGTGGTGCCGCCTCGCGATCGCTTTCGCATGCAGCGCT
TTTTCCGGCTAAACAGCTTCAACCTGCTGGCCAGCGACCGCATCCCACTG
AACCGCACCCTCAAGGACTACCGCACACCTGAATGCCGCGACAAGAAGTA
CGCCAGCGGTCTACCCAGCACGTCGGTTATAATTGTTTTCCACAACGAGG
CCTGGTCCGTGCTCCTGCGAACCATCACCAGCGTCATCAACCGGTCGCCG
CGCCACCTGCTTAAGGAAATTATCCTGGTGGACGATGCCAGCGATCGCTC
ATATTTAAAACGTCAACTGGAGAGCTATGTGAAAGTGCTGGCGGTACCCA
CGAGGATCTTTCGCATGAAGAAGCGAAGTGGCTTAGTGCCTGCCCGCCTT
TTGGGAGCCGAAAATGCTCGCGGCGATGTGCTGACCTTCCTCGACGCCCA
CTGCGAGTGCTCGCGGGGATGGCTGGAACCACTTCTTTCCCGCATTAAGG
AATCACGCAAGGTGGTAATCTGCCCGGTAATCGACATAATATCCGATGAC
AACTTTAGCTACACAAAAACCTTCGAGAACCACTGGGGCGCTTTCAACTG
GCAGCTGAGCTTCCGTTGGTTCTCCTCGGATCGTAAGCGGCAGACAGCGG
GCAACAGCTCCAAGGATAGCACTGACCCGATTGCCACTCCCGGAATGGCC
GGCGGATTGTTTGCTATCGATCGCAAGTACTTTTACGAAATGGGATCCTA
CGACAGCAACATGCGCGTTTGGGGCGGCGAGAATGTGGAAATGTCCTTCC
GCATTTGGCAGTGCGGCGGTCGTGTGGAGATCAGTCCCTGCTCGCACGTG
GGTCACGTGTTCCGCAGCAGCACGCCCTACACCTTCCCCGGCGGCATGAG
CGAGGTTCTCACGGATAATTTGGCCAGGGCCGCCACCGTCTGGATGGACG
ATTGGCAGTACTTTATAATGCTGTACACCTCTGGACTGACGCTGGGAGCC
AAGGACAAGGTGAATGTTACGGAGCGTGTGGCGCTCAGGGAGAGGCTCCA
GTGCAAACCGTTCTCCTGGTATCTGGAGAACATATGGCCAGAGCACTTCT
TTCCAGCTCCCGACCGCTTTTTCGGCAAGATCATATGGCTGGACGGGGAG
ACAGAATGTGCCCAGGCCTACAGCAAGCACATGAAGAACCTACCAGGTCG
TGCTTTGTCACGAGAGTGGAAGCGAGCGTTCGAGGAAATCGACAGCAAGG
CGGAGGAGCTGATGGCGCTGATCGATCTGGAGCGGGACAAGTGCCTTCGC
CCCCTCAAAGAGGATGTGCCGCGCTCATCATTGTCTGCAGTAACCGTAGG
CGATTGCACATCTCACGCCCAGTCGATGGATATGTTTGTAATAACTCCGA
AGGGCCAGATCATGACTAACGACAACGTCTGCCTGACCTATCGACAGCAA
AAGCTGGGTGTGATCAAGATGCTAAAGAACCGCAACGCCACCACTTCGAA
TGTAATGCTGGCGCAGTGCGCTTCCGACTCGAGTCAGTTGTGGACCTACG
ACATGGATACTCAGCAAATATCTCATAGGGACACAAAGCTCTGCCTTACT
CTGAAAGCGGCGACTAACTCGCGTCTCCAAAAGGTCGAGAAGGTTGTGCT
CAGTATGGAATGCGACTTCAAAGACATCACACAGAAGTGGGGCTTCATAC
CACTGCCATGGCGCATGGCAAGCTTTCTAGACCAT

BO05931.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
pgant3-RA 2004 CG4445-PA 1..2001 17..2017 10005 100 Plus
pgant5-RA 1893 CG31651-PA 1117..1284 1028..1195 285 78 Plus
pgant5-RB 1893 CG31651-PB 1117..1285 1028..1196 245 76.3 Plus
pgant5-RA 1893 CG31651-PA 580..689 485..594 190 78.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
pgant3-RA 2884 CG4445-RA 377..2377 17..2017 10005 100 Plus
pgant5-RA 4364 CG31651-RA 1875..2042 1028..1195 285 78 Plus
pgant5-RB 4340 CG31651-RB 1851..2019 1028..1196 245 76.3 Plus
pgant5-RA 4364 CG31651-RA 1338..1447 485..594 190 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7058377..7059635 1858..600 6295 100 Minus
2R 25286936 2R 7060283..7060467 432..248 925 100 Minus
2R 25286936 2R 7060057..7060223 599..433 835 100 Minus
2R 25286936 2R 7058161..7058319 2017..1859 795 100 Minus
2R 25286936 2R 7061223..7061356 150..17 670 100 Minus
2R 25286936 2R 7060812..7060917 255..150 515 99.1 Minus
2L 23513712 2L 3406574..3406698 1194..1070 220 78.4 Minus
2R 25286936 2R 15514080..15514250 995..1165 195 74.3 Plus
2L 23513712 2L 5078239..5078348 594..485 190 78.2 Minus
Blast to na_te.dros performed on 2014-11-28 04:29:27 has no hits.

BO05931.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:47 Download gff for BO05931.complete
Subject Subject Range Query Range Percent Splice Strand
pgant3-RA 364..2364 17..2019 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:14 Download gff for BO05931.complete
Subject Subject Range Query Range Percent Splice Strand
pgant3-RA 396..2396 17..2019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:05 Download gff for BO05931.complete
Subject Subject Range Query Range Percent Splice Strand
pgant3-RA 377..2377 17..2019 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:05 Download gff for BO05931.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7058159..7058319 1859..2019 98 <- Minus
2R 7058377..7059635 600..1858 100 <- Minus
2R 7060057..7060223 433..599 100 <- Minus
2R 7060283..7060463 252..432 100 <- Minus
2R 7060816..7060916 151..251 100 <- Minus
2R 7061223..7061356 17..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:14 Download gff for BO05931.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2948728..2948861 17..150 100   Minus
arm_2R 2945664..2945824 1859..2019 98 <- Minus
arm_2R 2945882..2947140 600..1858 100 <- Minus
arm_2R 2947562..2947728 433..599 100 <- Minus
arm_2R 2947788..2947968 252..432 100 <- Minus
arm_2R 2948321..2948421 151..251 100 <- Minus

BO05931.pep Sequence

Translation from 16 to 2035

> BO05931.pep
MGLRFQQLKKLWLLYLFLLFFAFFMFAISINLYVASIQGGDAEMRHPKPP
PKRRSLWPHKNIVAHYIGKGDIFGNMTADDYNINLFQPINGEGADGRPVV
VPPRDRFRMQRFFRLNSFNLLASDRIPLNRTLKDYRTPECRDKKYASGLP
STSVIIVFHNEAWSVLLRTITSVINRSPRHLLKEIILVDDASDRSYLKRQ
LESYVKVLAVPTRIFRMKKRSGLVPARLLGAENARGDVLTFLDAHCECSR
GWLEPLLSRIKESRKVVICPVIDIISDDNFSYTKTFENHWGAFNWQLSFR
WFSSDRKRQTAGNSSKDSTDPIATPGMAGGLFAIDRKYFYEMGSYDSNMR
VWGGENVEMSFRIWQCGGRVEISPCSHVGHVFRSSTPYTFPGGMSEVLTD
NLARAATVWMDDWQYFIMLYTSGLTLGAKDKVNVTERVALRERLQCKPFS
WYLENIWPEHFFPAPDRFFGKIIWLDGETECAQAYSKHMKNLPGRALSRE
WKRAFEEIDSKAEELMALIDLERDKCLRPLKEDVPRSSLSAVTVGDCTSH
AQSMDMFVITPKGQIMTNDNVCLTYRQQKLGVIKMLKNRNATTSNVMLAQ
CASDSSQLWTYDMDTQQISHRDTKLCLTLKAATNSRLQKVEKVVLSMECD
FKDITQKWGFIPLPWRMASFLDH

BO05931.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
pgant3-PA 667 CG4445-PA 1..667 1..667 3552 100 Plus
pgant5-PA 630 CG31651-PA 130..512 93..479 1174 56.1 Plus
pgant5-PB 630 CG31651-PB 130..512 93..479 1171 56.1 Plus
pgant2-PB 633 CG3254-PB 168..508 116..465 907 52 Plus
pgant2-PA 633 CG3254-PA 168..508 116..465 907 52 Plus