Clone Sequence Records
BO05931.3prime Sequence
940 bp (893 high quality bases) assembled on 2005-12-02
> BO05931.3prime
ATGGTCTAGAAAGCTTGCCATGCGCCATGGCAGTGGTATGAAGCCCCACT
TCTGTGTGATGTCTTTGAAGTCGCATTCCATACTGAGCACAACCTTCTCG
ACCTTTTGGAGACGCGAGTTAGTCGCCGCTTTCAGAGTAAGGCAGAGCTT
TGTGTCCCTATGAGATATTTGCTGAGTATCCATGTCGTAGGTCCACAACT
GACTCGAGTCGGAAGCGCACTGCGCCAGCATTACATTCGAAGTGGTGGCG
TTGCGGTTCTTTAGCATCTTGATCACACCCAGCTTTTGCTGTCGATAGGT
CAGGCAGACGTTGTCGTTAGTCATGATCTGGCCCTTCGGAGTTATTACAA
ACATATCCATCGACTGGGCGTGAGATGTGCAATCGCCTACGGTTACTGCA
GACAATGATGAGCGCGGCACATCCTCTTTGAGGGGGCGAAGGCACTTGTC
CCGCTCCAGATCGATCAGCGCCATCAGCTCCTCCGCCTTGCTGTCGATTT
CCTCGAACGCTCGCTTCCACTCTCGTGACAAAGCACGACCTGGTAGGTTC
TTCATGTGCTTGCTGTAGGCCTGGGCACATTCTGTCTCCCCGTCCAGCCA
TATGATCTTGCCGAAAAAGCGGTCGGGAGCTGGAAAGAAGTGCTCTGGCC
ATATGTTCTCCAGATACCAGGAGAACGGTTTGCACTGGAGCCTCTCCCTG
AGCGCCACACGCTCCGTAACATTCACCTTGTCCTTGGCTCCCAGCGTCAG
TCCAGAGGTGTACAGCATTATAAAGTACTGCCAATCGTCCATCCAGACGG
TGGCGGCCCTGGCCAAATTATCCGTGAGAACCTCGCTCATGCCGCCGGGG
AAGGTGTAGGGCGTGCTGCTGCGGAACACGTGACCCACGTGCGAGCAGGN
ACTGATCTCCACACGACCCGCGCACTGCCAAATGCGGAAG
BO05931.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4445-PA | 2004 | pgant3-RA | 1080..2001 | 940..19 | 4541 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pgant3-RA | 2884 | CG4445-RA | 1456..2377 | 940..19 | 4569 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7058377..7059139 | 178..940 | 3774 | 99.6 | Plus |
2R | 25286936 | 2R | 7058161..7058319 | 19..177 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:07:44 has no hits.
BO05931.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:07 Download gff for
BO05931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4445-PA | 1080..2004 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:04 Download gff for
BO05931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4445-PA | 1080..2004 | 18..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:51 Download gff for
BO05931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pgant3-RA | 1475..2396 | 19..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:43:16 Download gff for
BO05931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pgant3-RA | 1456..2377 | 19..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:43:16 Download gff for
BO05931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7058161..7058319 | 19..177 | 100 | <- | Plus |
2R | 7058377..7059139 | 178..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:51 Download gff for
BO05931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2945666..2945824 | 19..177 | 100 | <- | Plus |
arm_2R | 2945882..2946644 | 178..940 | 99 | | Plus |
BO05931.5prime Sequence
921 bp (872 high quality bases) assembled on 2005-12-02
> BO05931.5prime
GAAGTTATCAGTCGACATGGGTCTCCGGTTCCAGCAGCTGAAGAAGCTCT
GGCTGCTCTACCTTTTCCTGCTCTTCTTCGCGTTCTTCATGTTCGCCATC
AGCATCAACCTGTACGTGGCCAGCATCCAGGGCGGGGACGCGGAGATGCG
TCATCCGAAACCGCCGCCCAAGCGCCGCTCCCTCTGGCCGCACAAAAACA
TCGTGGCCCACTACATCGGCAAGGGAGACATCTTTGGCAACATGACAGCA
GATGATTACAACATCAACCTGTTCCAGCCCATCAACGGAGAAGGTGCCGA
TGGGCGACCAGTTGTGGTGCCGCCTCGCGATCGCTTTCGCATGCAGCGCT
TTTTCCGGCTAAACAGCTTCAACCTGCTGGCCAGCGACCGCATCCCACTG
AACCGCACCCTCAAGGACTACCGCACACCTGAATGCCGCGACAAGAAGTA
CGCCAGCGGTCTACCCAGCACGTCGGTTATAATTGTTTTCCACAACGAGG
CCTGGTCCGTGCTCCTGCGAACCATCACCAGCGTCATCAACCGGTCGCCG
CGCCACCTGCTTAAGGAAATTATCCTGGTGGACGATGCCAGCGATCGCTC
ATATTTAAAACGTCAACTGGAGAGCTATGTGAAAGTGCTGGCGGTACCCA
CGAGGATCTTTCGCATGAAGAAGCGAAGTGGCTTAGTGCCTGCCCGCCTT
TTGGGAGCCGAAAATGCTCGCGGCGATGTGCTGACCTTCCTCGACGCCCA
CTGCGAGTGCTCGCGGGGATGGCTGGAACCACTTCTTTCCCGCATTAAGG
AATCACGCAAGGTGGTAATCTGCCCGGTAATCGACATAATATCCGATGAC
AACTTTAGCTACACAAAAACCTTCGAGAACCACTGGGGCGCTTTCAACTG
GCAGCTGAGCTTCCGTGGTTC
BO05931.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4445-PA | 2004 | pgant3-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
CG31651-PB | 1893 | pgant5-RB | 658..689 | 563..594 | 135 | 96.8 | Plus |
CG31651-PA | 1893 | pgant5-RA | 658..689 | 563..594 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pgant3-RA | 2884 | CG4445-RA | 377..1282 | 17..921 | 4505 | 99.9 | Plus |
pgant5-RA | 4364 | CG31651-RA | 1338..1447 | 485..594 | 190 | 78.2 | Plus |
pgant5-RB | 4340 | CG31651-RB | 1314..1423 | 485..594 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7059319..7059635 | 916..600 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 7060283..7060467 | 432..248 | 925 | 100 | Minus |
2R | 25286936 | 2R | 7060057..7060223 | 599..433 | 835 | 100 | Minus |
2R | 25286936 | 2R | 7061223..7061356 | 150..17 | 670 | 100 | Minus |
2R | 25286936 | 2R | 7060812..7060917 | 255..150 | 515 | 99.1 | Minus |
2L | 23513712 | 2L | 5078239..5078348 | 594..485 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:06:19 has no hits.
BO05931.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:08 Download gff for
BO05931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4445-PA | 1..906 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:06 Download gff for
BO05931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4445-PA | 1..906 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:37:48 Download gff for
BO05931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pgant3-RA | 391..1301 | 9..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:45 Download gff for
BO05931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pgant3-RA | 372..1282 | 9..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:45 Download gff for
BO05931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7059313..7059635 | 600..921 | 99 | <- | Minus |
2R | 7060057..7060223 | 433..599 | 100 | <- | Minus |
2R | 7060283..7060463 | 252..432 | 100 | <- | Minus |
2R | 7060816..7060916 | 151..251 | 100 | <- | Minus |
2R | 7061223..7061361 | 9..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:37:48 Download gff for
BO05931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2946818..2947140 | 600..921 | 99 | <- | Minus |
arm_2R | 2947562..2947728 | 433..599 | 100 | <- | Minus |
arm_2R | 2947788..2947968 | 252..432 | 100 | <- | Minus |
arm_2R | 2948321..2948421 | 151..251 | 100 | <- | Minus |
arm_2R | 2948728..2948866 | 9..150 | 97 | | Minus |
BO05931.complete Sequence
2035 bp assembled on 2010-02-24
GenBank Submission: KX800122
> BO05931.complete
GAAGTTATCAGTCGACATGGGTCTCCGGTTCCAGCAGCTGAAGAAGCTCT
GGCTGCTCTACCTTTTCCTGCTCTTCTTCGCGTTCTTCATGTTCGCCATC
AGCATCAACCTGTACGTGGCCAGCATCCAGGGCGGGGACGCGGAGATGCG
TCATCCGAAACCGCCGCCCAAGCGCCGCTCCCTCTGGCCGCACAAAAACA
TCGTGGCCCACTACATCGGCAAGGGAGACATCTTTGGCAACATGACAGCA
GATGATTACAACATCAACCTGTTCCAGCCCATCAACGGAGAAGGTGCCGA
TGGGCGACCAGTTGTGGTGCCGCCTCGCGATCGCTTTCGCATGCAGCGCT
TTTTCCGGCTAAACAGCTTCAACCTGCTGGCCAGCGACCGCATCCCACTG
AACCGCACCCTCAAGGACTACCGCACACCTGAATGCCGCGACAAGAAGTA
CGCCAGCGGTCTACCCAGCACGTCGGTTATAATTGTTTTCCACAACGAGG
CCTGGTCCGTGCTCCTGCGAACCATCACCAGCGTCATCAACCGGTCGCCG
CGCCACCTGCTTAAGGAAATTATCCTGGTGGACGATGCCAGCGATCGCTC
ATATTTAAAACGTCAACTGGAGAGCTATGTGAAAGTGCTGGCGGTACCCA
CGAGGATCTTTCGCATGAAGAAGCGAAGTGGCTTAGTGCCTGCCCGCCTT
TTGGGAGCCGAAAATGCTCGCGGCGATGTGCTGACCTTCCTCGACGCCCA
CTGCGAGTGCTCGCGGGGATGGCTGGAACCACTTCTTTCCCGCATTAAGG
AATCACGCAAGGTGGTAATCTGCCCGGTAATCGACATAATATCCGATGAC
AACTTTAGCTACACAAAAACCTTCGAGAACCACTGGGGCGCTTTCAACTG
GCAGCTGAGCTTCCGTTGGTTCTCCTCGGATCGTAAGCGGCAGACAGCGG
GCAACAGCTCCAAGGATAGCACTGACCCGATTGCCACTCCCGGAATGGCC
GGCGGATTGTTTGCTATCGATCGCAAGTACTTTTACGAAATGGGATCCTA
CGACAGCAACATGCGCGTTTGGGGCGGCGAGAATGTGGAAATGTCCTTCC
GCATTTGGCAGTGCGGCGGTCGTGTGGAGATCAGTCCCTGCTCGCACGTG
GGTCACGTGTTCCGCAGCAGCACGCCCTACACCTTCCCCGGCGGCATGAG
CGAGGTTCTCACGGATAATTTGGCCAGGGCCGCCACCGTCTGGATGGACG
ATTGGCAGTACTTTATAATGCTGTACACCTCTGGACTGACGCTGGGAGCC
AAGGACAAGGTGAATGTTACGGAGCGTGTGGCGCTCAGGGAGAGGCTCCA
GTGCAAACCGTTCTCCTGGTATCTGGAGAACATATGGCCAGAGCACTTCT
TTCCAGCTCCCGACCGCTTTTTCGGCAAGATCATATGGCTGGACGGGGAG
ACAGAATGTGCCCAGGCCTACAGCAAGCACATGAAGAACCTACCAGGTCG
TGCTTTGTCACGAGAGTGGAAGCGAGCGTTCGAGGAAATCGACAGCAAGG
CGGAGGAGCTGATGGCGCTGATCGATCTGGAGCGGGACAAGTGCCTTCGC
CCCCTCAAAGAGGATGTGCCGCGCTCATCATTGTCTGCAGTAACCGTAGG
CGATTGCACATCTCACGCCCAGTCGATGGATATGTTTGTAATAACTCCGA
AGGGCCAGATCATGACTAACGACAACGTCTGCCTGACCTATCGACAGCAA
AAGCTGGGTGTGATCAAGATGCTAAAGAACCGCAACGCCACCACTTCGAA
TGTAATGCTGGCGCAGTGCGCTTCCGACTCGAGTCAGTTGTGGACCTACG
ACATGGATACTCAGCAAATATCTCATAGGGACACAAAGCTCTGCCTTACT
CTGAAAGCGGCGACTAACTCGCGTCTCCAAAAGGTCGAGAAGGTTGTGCT
CAGTATGGAATGCGACTTCAAAGACATCACACAGAAGTGGGGCTTCATAC
CACTGCCATGGCGCATGGCAAGCTTTCTAGACCAT
BO05931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pgant3-RA | 2004 | CG4445-PA | 1..2001 | 17..2017 | 10005 | 100 | Plus |
pgant5-RA | 1893 | CG31651-PA | 1117..1284 | 1028..1195 | 285 | 78 | Plus |
pgant5-RB | 1893 | CG31651-PB | 1117..1285 | 1028..1196 | 245 | 76.3 | Plus |
pgant5-RA | 1893 | CG31651-PA | 580..689 | 485..594 | 190 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pgant3-RA | 2884 | CG4445-RA | 377..2377 | 17..2017 | 10005 | 100 | Plus |
pgant5-RA | 4364 | CG31651-RA | 1875..2042 | 1028..1195 | 285 | 78 | Plus |
pgant5-RB | 4340 | CG31651-RB | 1851..2019 | 1028..1196 | 245 | 76.3 | Plus |
pgant5-RA | 4364 | CG31651-RA | 1338..1447 | 485..594 | 190 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7058377..7059635 | 1858..600 | 6295 | 100 | Minus |
2R | 25286936 | 2R | 7060283..7060467 | 432..248 | 925 | 100 | Minus |
2R | 25286936 | 2R | 7060057..7060223 | 599..433 | 835 | 100 | Minus |
2R | 25286936 | 2R | 7058161..7058319 | 2017..1859 | 795 | 100 | Minus |
2R | 25286936 | 2R | 7061223..7061356 | 150..17 | 670 | 100 | Minus |
2R | 25286936 | 2R | 7060812..7060917 | 255..150 | 515 | 99.1 | Minus |
2L | 23513712 | 2L | 3406574..3406698 | 1194..1070 | 220 | 78.4 | Minus |
2R | 25286936 | 2R | 15514080..15514250 | 995..1165 | 195 | 74.3 | Plus |
2L | 23513712 | 2L | 5078239..5078348 | 594..485 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:29:27 has no hits.
BO05931.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:47 Download gff for
BO05931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pgant3-RA | 364..2364 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:14 Download gff for
BO05931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pgant3-RA | 396..2396 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:05 Download gff for
BO05931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pgant3-RA | 377..2377 | 17..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:05 Download gff for
BO05931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7058159..7058319 | 1859..2019 | 98 | <- | Minus |
2R | 7058377..7059635 | 600..1858 | 100 | <- | Minus |
2R | 7060057..7060223 | 433..599 | 100 | <- | Minus |
2R | 7060283..7060463 | 252..432 | 100 | <- | Minus |
2R | 7060816..7060916 | 151..251 | 100 | <- | Minus |
2R | 7061223..7061356 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:14 Download gff for
BO05931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2948728..2948861 | 17..150 | 100 | | Minus |
arm_2R | 2945664..2945824 | 1859..2019 | 98 | <- | Minus |
arm_2R | 2945882..2947140 | 600..1858 | 100 | <- | Minus |
arm_2R | 2947562..2947728 | 433..599 | 100 | <- | Minus |
arm_2R | 2947788..2947968 | 252..432 | 100 | <- | Minus |
arm_2R | 2948321..2948421 | 151..251 | 100 | <- | Minus |
BO05931.pep Sequence
Translation from 16 to 2035
> BO05931.pep
MGLRFQQLKKLWLLYLFLLFFAFFMFAISINLYVASIQGGDAEMRHPKPP
PKRRSLWPHKNIVAHYIGKGDIFGNMTADDYNINLFQPINGEGADGRPVV
VPPRDRFRMQRFFRLNSFNLLASDRIPLNRTLKDYRTPECRDKKYASGLP
STSVIIVFHNEAWSVLLRTITSVINRSPRHLLKEIILVDDASDRSYLKRQ
LESYVKVLAVPTRIFRMKKRSGLVPARLLGAENARGDVLTFLDAHCECSR
GWLEPLLSRIKESRKVVICPVIDIISDDNFSYTKTFENHWGAFNWQLSFR
WFSSDRKRQTAGNSSKDSTDPIATPGMAGGLFAIDRKYFYEMGSYDSNMR
VWGGENVEMSFRIWQCGGRVEISPCSHVGHVFRSSTPYTFPGGMSEVLTD
NLARAATVWMDDWQYFIMLYTSGLTLGAKDKVNVTERVALRERLQCKPFS
WYLENIWPEHFFPAPDRFFGKIIWLDGETECAQAYSKHMKNLPGRALSRE
WKRAFEEIDSKAEELMALIDLERDKCLRPLKEDVPRSSLSAVTVGDCTSH
AQSMDMFVITPKGQIMTNDNVCLTYRQQKLGVIKMLKNRNATTSNVMLAQ
CASDSSQLWTYDMDTQQISHRDTKLCLTLKAATNSRLQKVEKVVLSMECD
FKDITQKWGFIPLPWRMASFLDH
BO05931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pgant3-PA | 667 | CG4445-PA | 1..667 | 1..667 | 3552 | 100 | Plus |
pgant5-PA | 630 | CG31651-PA | 130..512 | 93..479 | 1174 | 56.1 | Plus |
pgant5-PB | 630 | CG31651-PB | 130..512 | 93..479 | 1171 | 56.1 | Plus |
pgant2-PB | 633 | CG3254-PB | 168..508 | 116..465 | 907 | 52 | Plus |
pgant2-PA | 633 | CG3254-PA | 168..508 | 116..465 | 907 | 52 | Plus |