Clone Sequence Records
BO05933.3prime Sequence
908 bp (784 high quality bases) assembled on 2005-12-02
> BO05933.3prime
ATGGTCTAGAAAGCTTGCGGAGGACTCGCTTGTCGCTGGATGATGCTGTT
CCAGCGGCTGGCGTGGCTGTGGGGCTGATGGAGGAGCATGTGGAGCCGGC
AATGCCATTGGTGGCAGCTTGTTCTCCACCACGGCGACAATGGGCGCTGG
ATTCACGAGCGGCGGGGGCAACGCCTCGAAACTCATGCATCCTCGCTGCT
GCCCGTCGTCCACAATGGGCGGTGTGTCGATAGAGTCAATGGTGGATGCA
CTGGACGAGGTCCTTCCACCGCTCAATCCCTCGGAGACGGCCACTAATGC
GGCTGTGGTGTTGCGGTTGTGCTGCAGCAGATCGTTGATCTGTGAGAGGC
GCGAGGAACTGGCGATCGGTGTGCTCAAACTGATAAATTCATTACCACTG
GCCGTTGCAGGAGAAGATGATACAGTGGCTGGCGAGGCTGTTGCTGAACC
AACTGGATTGCCCACAAGTCGTGACGGCGAGGCTGAGGTGGAGGCTGCGG
TCATGGAGACAGCGGTGGTCTGGTAGGGAACGTTGCTGGAGGCGGTGGTG
GTTGCATTTCCATACGGCGGCACCGAAGGCACCGCACAGGAGCTATACGC
GCACGAACTGGGTGCTCCGGGGGCGACAGCGACGGCGGGTGACGCCGAAT
GCTGCTGATAGGCGGCCGTATAGGAAGTGATCTGAGTGCTGCCATAGCTG
AGCGACTGATATAGTTCTCCGTACGAGGGCGTGGCATTGGAGCCACTAGC
AAAGAGTCCGGAGTCCAGGCTGTCCAATTGGGCGTAGCCCGCGTAGCTCT
GGCTCTGCGCTTGCTGCTGCTGGGGTATCAACTGGCCCGCAGTGGGCACT
CCTGGCTGCTGTACCTGCTGTTGATAGTAGCTCACGCTGCTCTCGGGTGT
GTAAGCTG
BO05933.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4272-PA | 2559 | CG4272-RA | 1667..2556 | 908..19 | 4450 | 100 | Minus |
| CG4272-PB | 2559 | CG4272-RB | 1667..2556 | 908..19 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 3896 | CG4272-RD | 1848..2737 | 908..19 | 4450 | 100 | Minus |
| Axud1-RC | 4318 | CG4272-RC | 2270..3159 | 908..19 | 4450 | 100 | Minus |
| Axud1-RA | 4145 | CG4272-RA | 2097..2986 | 908..19 | 4450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2368313..2368978 | 684..19 | 3330 | 100 | Minus |
| 2L | 23513712 | 2L | 2367987..2368213 | 908..682 | 1135 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 22:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6780..6870 | 891..800 | 124 | 63.8 | Minus |
BO05933.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:09 Download gff for
BO05933.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1667..2559 | 18..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:07 Download gff for
BO05933.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1667..2559 | 18..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:08 Download gff for
BO05933.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 2097..2992 | 11..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:42:46 Download gff for
BO05933.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 2097..2992 | 11..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:42:46 Download gff for
BO05933.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2367987..2368213 | 682..908 | 100 | -> | Minus |
| 2L | 2368316..2368984 | 11..681 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:08 Download gff for
BO05933.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2367987..2368213 | 682..908 | 100 | -> | Minus |
| arm_2L | 2368316..2368984 | 11..681 | 99 | | Minus |
BO05933.5prime Sequence
769 bp (766 high quality bases) assembled on 2005-12-02
> BO05933.5prime
GAAGTTATCAGTCGACATGTTTAGTCCTATAAAAAAAATATTTACGTACA
TACAAAAAAATGCGAGCGGCTCCAATATGTTTAGCCCATCAGGAAACAAG
GCCGCCGGCCAAAGGGAGGGGACCACCAGCCTAACTGCCCACGACGAAGG
CGAAAGGAAGGATCAGCGGCATCTGGATCACAAGGATAATCAGAGCGAAC
CGGAGGAGCGGCAGCATCAGCTGCAAATATTTCCCCACCTGGACGATGAC
GACGACGACATCGAGAGGCAGATCAAAACCTCCATAATTGACGCCAGCAA
GGTGCACGCAGCGAAAGCCAAGGCGTTGGCTTCCCTACCCATGCCGCTTG
AGCAGCTCGATGATGAACTGGCGGACTTTGCTCACGGCCCGGCGGACACC
GAACTAGAGGAGCAGTTCCTTGAGCTGGAGAACTATCCTAATAATGAGAT
AATCGTACTAGGCGATGCGGATCTTAACTCTTCAATAGCTTCCGACGCAG
TCTCCGAGGACCCACTGGCAATTGACAACATTCTTGACTCCGCGTCGGTC
ACCACAAACGAGGAGGTCGACACCAGTGGAGAACTTCTTTGGCTGAAGTT
GAACAATGAGACGGAAATGGCCACCAGATCAGCGGAGGTGGTGTCCAACA
ACCAAGCATCATTGGAGCCTGCCCAGCCAGCCAAACCGAAAGAGGATGAG
CTTAGAGATGGTGGGTCTGATTCTGGTTTAGGAAGTGAAACCTCCGCGTT
ACTCAAGGATCAGGCGGAG
BO05933.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4272-PA | 2559 | CG4272-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
| CG4272-PB | 2559 | CG4272-RB | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 3896 | CG4272-RD | 181..934 | 16..769 | 3770 | 100 | Plus |
| Axud1-RC | 4318 | CG4272-RC | 603..1356 | 16..769 | 3770 | 100 | Plus |
| Axud1-RA | 4145 | CG4272-RA | 430..1183 | 16..769 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2366320..2367073 | 16..769 | 3770 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 583..622 | 242..280 | 107 | 77.5 | Plus |
BO05933.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:10 Download gff for
BO05933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:09 Download gff for
BO05933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:25 Download gff for
BO05933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 430..1183 | 16..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:50 Download gff for
BO05933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 430..1183 | 16..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:50 Download gff for
BO05933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2366320..2367073 | 16..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:25 Download gff for
BO05933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2366320..2367073 | 16..769 | 100 | | Plus |
BO05933.complete Sequence
2590 bp assembled on 2010-02-24
GenBank Submission: KX794175
> BO05933.complete
GAAGTTATCAGTCGACATGTTTAGTCCTATAAAAAAAATATTTACGTACA
TACAAAAAAATGCGAGCGGCTCCAATATGTTTAGCCCATCAGGAAACAAG
GCCGCCGGCCAAAGGGAGGGGACCACCAGCCTAACTGCCCACGACGAAGG
CGAAAGGAAGGATCAGCGGCATCTGGATCACAAGGATAATCAGAGCGAAC
CGGAGGAGCGGCAGCATCAGCTGCAAATATTTCCCCACCTGGACGATGAC
GACGACGACATCGAGAGGCAGATCAAAACCTCCATAATTGACGCCAGCAA
GGTGCACGCAGCGAAAGCCAAGGCGTTGGCTTCCCTACCCATGCCGCTTG
AGCAGCTCGATGATGAACTGGCGGACTTTGCTCACGGCCCGGCGGACACC
GAACTAGAGGAGCAGTTCCTTGAGCTGGAGAACTATCCTAATAATGAGAT
AATCGTACTAGGCGATGCGGATCTTAACTCTTCAATAGCTTCCGACGCAG
TCTCCGAGGACCCACTGGCAATTGACAACATTCTTGACTCCGCGTCGGTC
ACCACAAACGAGGAGGTCGACACCAGTGGAGAACTTCTTTGGCTGAAGTT
GAACAATGAGACGGAAATGGCCACCAGATCAGCGGAGGTGGTGTCCAACA
ACCAAGCATCATTGGAGCCTGCCCAGCCAGCCAAACCGAAAGAGGATGAG
CTTAGAGATGGTGGGTCTGATTCTGGTTTAGGAAGTGAAACCTCCGCGTT
ACTCAAGGATCAGGCGGAGAAAGAAGCCGAGCCGGAAATCCAGAAAAAGG
TGGAAACGAAGCCCATAAGGTCCAACCTTAAACGGAGACTCGAAGATTCG
GAAAGCGATGCTATAGATCTGGTGCCCGACATGTCTGCCCCTCCAGTAGC
CCCCCAGAAGCGGACTAAGCGCTCCATCAACTTTGACGAGGTGAAGGTGT
TCTACTTCCCACGACAACAGGGCTTCAGTTGTGTACCAACGGCGGGCGGA
TGCACCTTGGGCATGGGTGCAAGGCATGTAGGTTTTAAGACGATGACCCT
GGCCGAGCACGCAGCGGAGTTGAGGCGGGCACATCGCAGCCAGAACCAAG
AACTCCAGCCTCGGGGTTCCAGCAGTGACGACAGCGAGGAGTCCGAGGAG
GATTACCTAAGCGAGGGTAGTGGCTCCGATGCCGAAGACGGTTCCAATGG
CTTCCTACAGCCGGTGACGCCCAAGCAGAGAAGGGCACTGCTGAAAGCGG
CGGGCGTGCGCAAAATTGATGCCAGCGAGAAGAGCGAATGCCGCGATATC
AGAAACTCCCGGGAAGTGTGCGGCTGCTCCTGCAGAGAGTTTTGCGATCC
GGAGACTTGTGCCTGCAGCCAGGCGGGCATTAAATGTCAAGTAGATCGAG
CCATGTTTCCTTGCGGATGTACTCGCGAAGCTTGTGGCAACACAGTTGGC
CGGGTAGAGTTCAATCCCACGAGGGTGCGAACCCACTATATCCACACGGT
GATGCGGTTGGATCTCGAGCAGCGACAGGGTTCGGTTCAAGGCGTCCAGG
GAGGACATCTGCAGCCGCAACAGCAGCAACCATCCCAACAGACCATTGGC
TATTCCCCGGTGGGAACGGCTGGCTCAACATCCGCGTACTTCCTGCAAAC
GCAATCGAACTACAGCTCCGGCTACGCTTCACCAGCTTACACACCCGAGA
GCAGCGTGAGCTACTATCAACAGCAGGTACAGCAGCCAGGAGTGCCCACT
GCGGGCCAGTTGATACCCCAGCAGCAGCAAGCGCAGAGCCAGAGCTACGC
GGGCTACGCCCAATTGGACAGCCTGGACTCCGGACTCTTTGCTAGTGGCT
CCAATGCCACGCCCTCGTACGGAGAACTATATCAGTCGCTCAGCTATGGC
AGCACTCAGATCACTTCCTATACGGCCGCCTATCAGCAGCATTCGGCGTC
ACCCGCCGTCGCTGTCGCCCCCGGAGCACCCAGTTCGTGCGCGTATAGCT
CCTGTGCGGTGCCTTCGGTGCCGCCGTATGGAAATGCAACCACCACCGCC
TCCAGCAACGTTCCCTACCAGACCACCGCTGTCTCCATGACCGCAGCCTC
CACCTCAGCCTCGCCGTCACGACTTGTGGGCAATCCAGTTGGTTCAGCAA
CAGCCTCGCCAGCCACTGTATCATCTTCTCCTGCAACGGCCAGTGGTAAT
GAATTTATCAGTTTGAGCACACCGATCGCCAGTTCCTCGCGCCTCTCACA
GATCAACGATCTGCTGCAGCACAACCGCAACACCACAGCCGCATTAGTGG
CCGTCTCCGAGGGATTGAGCGGTGGAAGGACCTCGTCCAGTGCATCCACC
ATTGACTCTATCGACACACCGCCCATTGTGGACGACGGGCAGCAGCGAGG
ATGCATGAGTTTCGAGGCGTTGCCCCCGCCGCTCGTGAATCCAGCGCCCA
TTGTCGCCGTGGTGGAGAACAAGCTGCCACCAATGGCATTGCCGGCTCCA
CATGCTCCTCCATCAGCCCCACAGCCACGCCAGCCGCTGGAACAGCATCA
TCCAGCGACAAGCGAGTCCTCCGCAAGCTTTCTAGACCAT
BO05933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 2559 | CG4272-PD | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| Axud1-RC | 2559 | CG4272-PC | 1..2556 | 17..2572 | 12780 | 100 | Plus |
| Axud1-RA | 2559 | CG4272-PA | 1..2556 | 17..2572 | 12780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-RD | 3896 | CG4272-RD | 181..2737 | 16..2572 | 12785 | 100 | Plus |
| Axud1-RC | 4318 | CG4272-RC | 603..3159 | 16..2572 | 12785 | 100 | Plus |
| Axud1-RA | 4145 | CG4272-RA | 430..2986 | 16..2572 | 12785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2366320..2368213 | 16..1909 | 9470 | 100 | Plus |
| 2L | 23513712 | 2L | 2368313..2368978 | 1907..2572 | 3330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:29:35 has no hits.
BO05933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:48 Download gff for
BO05933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4272-RB | 97..2646 | 23..2574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:18 Download gff for
BO05933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 437..2986 | 23..2574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:10 Download gff for
BO05933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Axud1-RA | 437..2986 | 23..2574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:10 Download gff for
BO05933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2366327..2368213 | 23..1909 | 100 | -> | Plus |
| 2L | 2368316..2368978 | 1910..2574 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:18 Download gff for
BO05933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2366327..2368213 | 23..1909 | 100 | -> | Plus |
| arm_2L | 2368316..2368978 | 1910..2574 | 99 | | Plus |
BO05933.pep Sequence
Translation from 16 to 2590
> BO05933.pep
MFSPIKKIFTYIQKNASGSNMFSPSGNKAAGQREGTTSLTAHDEGERKDQ
RHLDHKDNQSEPEERQHQLQIFPHLDDDDDDIERQIKTSIIDASKVHAAK
AKALASLPMPLEQLDDELADFAHGPADTELEEQFLELENYPNNEIIVLGD
ADLNSSIASDAVSEDPLAIDNILDSASVTTNEEVDTSGELLWLKLNNETE
MATRSAEVVSNNQASLEPAQPAKPKEDELRDGGSDSGLGSETSALLKDQA
EKEAEPEIQKKVETKPIRSNLKRRLEDSESDAIDLVPDMSAPPVAPQKRT
KRSINFDEVKVFYFPRQQGFSCVPTAGGCTLGMGARHVGFKTMTLAEHAA
ELRRAHRSQNQELQPRGSSSDDSEESEEDYLSEGSGSDAEDGSNGFLQPV
TPKQRRALLKAAGVRKIDASEKSECRDIRNSREVCGCSCREFCDPETCAC
SQAGIKCQVDRAMFPCGCTREACGNTVGRVEFNPTRVRTHYIHTVMRLDL
EQRQGSVQGVQGGHLQPQQQQPSQQTIGYSPVGTAGSTSAYFLQTQSNYS
SGYASPAYTPESSVSYYQQQVQQPGVPTAGQLIPQQQQAQSQSYAGYAQL
DSLDSGLFASGSNATPSYGELYQSLSYGSTQITSYTAAYQQHSASPAVAV
APGAPSSCAYSSCAVPSVPPYGNATTTASSNVPYQTTAVSMTAASTSASP
SRLVGNPVGSATASPATVSSSPATASGNEFISLSTPIASSSRLSQINDLL
QHNRNTTAALVAVSEGLSGGRTSSSASTIDSIDTPPIVDDGQQRGCMSFE
ALPPPLVNPAPIVAVVENKLPPMALPAPHAPPSAPQPRQPLEQHHPATSE
SSASFLDH
BO05933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Axud1-PD | 852 | CG4272-PD | 1..852 | 1..852 | 4383 | 100 | Plus |
| Axud1-PC | 852 | CG4272-PC | 1..852 | 1..852 | 4383 | 100 | Plus |
| Axud1-PA | 852 | CG4272-PA | 1..852 | 1..852 | 4383 | 100 | Plus |
| Axud1-PB | 852 | CG4272-PB | 1..852 | 1..852 | 4383 | 100 | Plus |
