Clone Sequence Records
BO05938.3prime Sequence
864 bp (790 high quality bases) assembled on 2005-12-02
> BO05938.3prime
ATGGTCTAGAAAGCTTGCTTGGACATTATAGTGCGGTCCTGGCGTTGGCA
CACTCTTTAGCGGCGAATCAAACTCCATGGGCGGCGCTTCAATGACCGGC
GTCTCCGCCGCCCCGGTGCCGATTCTCTCCTGCAGAATTTCGTACAACTT
GTGGATGTGCTCGTTGTGGGCCGTCGTCGGCTGCATAGCCTTCATCAATG
TGGCCAAACGACCGGCGGGCAGCTTATTGTGCACATACCACAAAAGTTTC
AGCATGTGACGAGAGGTCACATTCTCGCGCGTCAGTCCGGCAAAGATGAA
CTCGTCGAAGAGCGTGGTGCAGAAGTCCTCCGTGGCAAACTCTTCGCTCA
TGGGGATGAGCAGGGCAATCAGAGAGTGCAGGAAGGGATCCTCATATGCG
CGGTCGTCTTTGCAGGCGGACAGAATGGCCAAGACGCGCAACACGCCCAC
GCGATCCTTCAGGCGCGCCGTGTGCAGCGTATAGTACATGGCCAATATGC
TGGCCACGGAACTCTCTTGAATGTACGCCTCCACGGCATCCGGTGCCGGT
CCCGAATGCTCGATGGTGGTCAGAGCAGATTCACGCTCGTCCGGCGGTAG
TTTCGCGTGCAAGCTGCGGCACTGGTCGTCAACCATTAACGACATGAGGG
CGGGCAAAAACTTGGTGACCACCTGGCAATCAAGTTTGGGCTCCTTAAAG
TCTTGCGAATCGATCATCACCCAGGCACTCAAGCCCAAGGCCAACATTCT
CAACAACAGGATGAGTATCTGATTGTCACGCGGCATGCCCTCGTTGTTGA
TCAAGTGATGCAATATCTTGATGGCCGACGTGGCCAAAAAAGTGATGGCA
TACGGATCGCACAA
BO05938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32721-PA | 1785 | CG32721-RA | 937..1782 | 864..19 | 4180 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 1015..1860 | 864..19 | 4200 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7726775..7727269 | 370..864 | 2445 | 99.6 | Plus |
| X | 23542271 | X | 7726362..7726713 | 19..370 | 1760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:27:25 has no hits.
BO05938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:16 Download gff for
BO05938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 939..1785 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:18 Download gff for
BO05938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 939..1785 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:28 Download gff for
BO05938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 1017..1865 | 12..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:05 Download gff for
BO05938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 1017..1865 | 12..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:05 Download gff for
BO05938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7726357..7726712 | 12..369 | 99 | <- | Plus |
| X | 7726775..7727267 | 370..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:28 Download gff for
BO05938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7620390..7620745 | 12..369 | 99 | <- | Plus |
| arm_X | 7620808..7621300 | 370..862 | 99 | | Plus |
BO05938.5prime Sequence
854 bp (753 high quality bases) assembled on 2005-12-02
> BO05938.5prime
GAAGTTATCAGTCGACATGATAATGAGCACACCGGCGAAAAATAACAATG
GAACTGGACTGGAGGACGTGAATATTCCGGGTCAGGCCTATCTGCGCGAG
GCCCTGACCTCCTGCACTGATCCCTTGAAGGCCATCGAGAGTTTTCAGCT
TGAGAATGGTGTATTGCTGCCTTCACTGCGCCCCATGTTGCCTTTACTCG
ATTTGCACGGCGTGCGTCGACTGGACTTTCATACCTCGCTGATGGAGGAG
CTGCGCGACAAGCTGATAGCTCACATCAACGAGATGGGCCAAAAGGAGCC
CCGGGAGCGGGACAAGAAGCTCAAGGAGCTGCTCGTTAAGAGCTTCCCCG
TCGTTCGGGTGAAGTCGCTGCGGCCCGTGGTCATGGCCATATTGAGGAAT
ACCCAGCACATCGATGACAAGTACCTCAAAATCCTTGTAAGGGATCGGGA
ACTGTATGCGGACACGGATACGGAAGTTAAGCGGCAGATATGGCGTGATA
ATCAATCGTTGTTTGGTGACGAGGTGTCGCCTCTCCTCTCACAATATATT
CGCGAGAAGGAGCACATCCTGTTTGATCACACCAACTTGAACAATCTGTT
CTTCCACCCAACGCCCAAGGTGCGAAGGCAGGGGGAAGTAGTCCAAAAGT
TGGCCAACATGATTGGCACCAGTGTCAAGCTGTACGATATGGTGCTGCAG
TTCCTGCGCACTCTATTCCTGCGCACCCGCAATGTTCACTATTGCACGCT
GCGTGCAGAGCTACTGATGGCCTTACACGATCTCGAGGTGCAGGAGATCA
TCTCGATAGATCCCTGTCACAAGTTCACCTGGTGCCTGGACGCCTGCATA
AGGG
BO05938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32721-PA | 1785 | CG32721-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 78..916 | 16..854 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7727368..7728080 | 854..142 | 3550 | 99.9 | Minus |
| X | 23542271 | X | 7728152..7728284 | 148..16 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:44:50 has no hits.
BO05938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:17 Download gff for
BO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:20 Download gff for
BO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32721-PA | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:16 Download gff for
BO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 78..916 | 16..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:14 Download gff for
BO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 78..916 | 16..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:14 Download gff for
BO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7727368..7728073 | 149..854 | 100 | <- | Minus |
| X | 7728152..7728284 | 16..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:16 Download gff for
BO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7621401..7622106 | 149..854 | 100 | <- | Minus |
| arm_X | 7622185..7622317 | 16..148 | 100 | | Minus |
BO05938.complete Sequence
1816 bp assembled on 2007-10-05
GenBank Submission: FJ630203
> BO05938.complete
GAAGTTATCAGTCGACATGATAATGAGCACACCGGCGAAAAATAACAATG
GAACTGGACTGGAGGACGTGAATATTCCGGGTCAGGCCTATCTGCGCGAG
GCCCTGACCTCCTGCACTGATCCCTTGAAGGCCATCGAGAGTTTTCAGCT
TGAGAATGGTGTATTGCTGCCTTCACTGCGCCCCATGTTGCCTTTACTCG
ATTTGCACGGCGTGCGTCGACTGGACTTTCATACCTCGCTGATGGAGGAG
CTGCGCGACAAGCTGATAGCTCACATCAACGAGATGGGCCAAAAGGAGCC
CCGGGAGCGGGACAAGAAGCTCAAGGAGCTGCTCGTTAAGAGCTTCCCCG
TCGTTCGGGTGAAGTCGCTGCGGCCCGTGGTCATGGCCATATTGAGGAAT
ACCCAGCACATCGATGACAAGTACCTCAAAATCCTTGTAAGGGATCGGGA
ACTGTATGCGGACACGGATACGGAAGTTAAGCGGCAGATATGGCGTGATA
ATCAATCGTTGTTTGGTGACGAGGTGTCGCCTCTCCTCTCACAATATATT
CGCGAGAAGGAGCACATCCTGTTTGATCACACCAACTTGAACAATCTGTT
CTTCCACCCAACGCCCAAGGTGCGAAGGCAGGGGGAAGTAGTCCAAAAGT
TGGCCAACATGATTGGCACCAGTGTCAAGCTGTACGATATGGTGCTGCAG
TTCCTGCGCACTCTATTCCTGCGCACCCGCAATGTTCACTATTGCACGCT
GCGTGCAGAGCTACTGATGGCCTTACACGATCTCGAGGTGCAGGAGATCA
TCTCGATAGATCCCTGTCACAAGTTCACCTGGTGCCTGGACGCCTGCATA
AGGGAGAAGAATGTGGACATTAAACGTTCACGGGAGCTCCAGGGATTTCT
TGACAACATCAAGCGCGGTCAGGAGCAGGTTCTGGGCGATCTGTCCATGA
CTTTGTGCGATCCGTATGCCATCAACTTTTTGGCCACGTCGGCCATCAAG
ATATTGCATCACTTGATCAACAACGAGGGCATGCCGCGTGACAATCAGAT
ACTCATCCTGTTGTTGAGAATGTTGGCCTTGGGCTTGAGTGCCTGGGTGA
TGATCGATTCGCAAGACTTTAAGGAGCCCAAACTTGATTGCCAGGTGGTC
ACCAAGTTTTTGCCCGCCCTCATGTCGTTAATGGTTGACGACCAGTGCCG
CAGCTTGCACGCGAAACTACCGCCGGACGAGCGTGAATCTGCTCTGACCA
CCATCGAGCATTCGGGACCGGCACCGGATGCCGTGGAGGCGTACATTCAA
GAGAGTTCCGTGGCCAGCATATTGGCCATGTACTATACGCTGCACACGGC
GCGCCTGAAGGATCGCGTGGGCGTGTTGCGCGTCTTGGCCATTCTGTCCG
CCTGCAAAGACGACCGCGCATATGAGGATCCCTTCCTGCACTCTCTGATT
GCCCTGCTCATCCCCATGAGCGAAGAGTTTGCCACGGAGGACTTCTGCAC
CACGCTCTTCGACGAGTTCATCTTTGCCGGACTGACGCGCGAGAATGTGA
CCTCTCGTCACATGCTGAAACTTTTGTGGTATGTGCACAATAAGCTGCCC
GCCGGTCGTTTGGCCACATTGATGAAGGCTATGCAGCCGACGACGGCCCA
CAACGAGCACATCCACAAGTTGTACGAAATTCTGCAGGAGAGAATCGGCA
CCGGGGCGGCGGAGACGCCGGTCATTGAAGCGCCGCCCATGGAGTTTGAT
TCGCCGCTAAAGAGTGTGCCAACGCCAGGACCGCACTATAATGTCCAAGC
AAGCTTTCTAGACCAT
BO05938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 1785 | CG32721-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-RA | 2226 | CG32721-RA | 78..1860 | 16..1798 | 8915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7726775..7728080 | 1447..142 | 6515 | 99.9 | Minus |
| X | 23542271 | X | 7726362..7726713 | 1798..1447 | 1760 | 100 | Minus |
| X | 23542271 | X | 7728152..7728284 | 148..16 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:07:15 has no hits.
BO05938.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:12 Download gff for
BO05938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 1..1785 | 17..1799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:25 Download gff for
BO05938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 39..1826 | 16..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:27 Download gff for
BO05938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 79..1860 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:13 Download gff for
BO05938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 39..1826 | 16..1805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:06 Download gff for
BO05938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NELF-B-RA | 79..1860 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:06 Download gff for
BO05938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7726358..7726712 | 1448..1800 | 99 | <- | Minus |
| X | 7726775..7728073 | 149..1447 | 100 | <- | Minus |
| X | 7728152..7728283 | 17..148 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:27 Download gff for
BO05938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7620391..7620745 | 1448..1800 | 99 | <- | Minus |
| arm_X | 7620808..7622106 | 149..1447 | 100 | <- | Minus |
| arm_X | 7622185..7622316 | 17..148 | 100 | | Minus |
BO05938.pep Sequence
Translation from 16 to 1816
> BO05938.pep
MIMSTPAKNNNGTGLEDVNIPGQAYLREALTSCTDPLKAIESFQLENGVL
LPSLRPMLPLLDLHGVRRLDFHTSLMEELRDKLIAHINEMGQKEPRERDK
KLKELLVKSFPVVRVKSLRPVVMAILRNTQHIDDKYLKILVRDRELYADT
DTEVKRQIWRDNQSLFGDEVSPLLSQYIREKEHILFDHTNLNNLFFHPTP
KVRRQGEVVQKLANMIGTSVKLYDMVLQFLRTLFLRTRNVHYCTLRAELL
MALHDLEVQEIISIDPCHKFTWCLDACIREKNVDIKRSRELQGFLDNIKR
GQEQVLGDLSMTLCDPYAINFLATSAIKILHHLINNEGMPRDNQILILLL
RMLALGLSAWVMIDSQDFKEPKLDCQVVTKFLPALMSLMVDDQCRSLHAK
LPPDERESALTTIEHSGPAPDAVEAYIQESSVASILAMYYTLHTARLKDR
VGVLRVLAILSACKDDRAYEDPFLHSLIALLIPMSEEFATEDFCTTLFDE
FIFAGLTRENVTSRHMLKLLWYVHNKLPAGRLATLMKAMQPTTAHNEHIH
KLYEILQERIGTGAAETPVIEAPPMEFDSPLKSVPTPGPHYNVQASFLDH
BO05938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NELF-B-PA | 594 | CG32721-PA | 1..594 | 1..594 | 3070 | 100 | Plus |
