Clone Sequence Records
BO05940.3prime Sequence
812 bp (734 high quality bases) assembled on 2005-12-02
> BO05940.3prime
ATGGTCTAGAAAGCTTGCCAGATACATGCCGTTGACCAGGAAGTCCGCCT
CCTGTGAGTAGGGCGTCTTGCCGCCCAGTCGTCGTGCCCTCCGCGTCACC
GTCCGCATCCTGCACCCGATAAGAATGGCCAGCGCAGCGGTGACCAGCAG
GCCCAGAGTCAGCGAGAGGACCGCCCCGCCAGGTCGCTCCGAGTGACCGT
CGTGATCGCGGAACTCCATCGCCAGGTTGTCATGGATCATCTTGTACTGC
TCGTGGACGGGGGAAGCGGGAACCGGCAGGGCTGGAAGGGATCCCTCCGG
TTGCAACTTGTTTTGCTCCAGGGCAAGTTCAATGGGATCCTTGGCCGTCT
TCGTCTTGACCTTCTTGTGTTTGTGCTGCTTCTTTTTTGGTGCCTCCGTG
TACGTTTCCTCATCGTAATCATCGTAGTCCCCATCTGCCGCTGGACCCTG
ATTTTTCCCAGCTACGGGTGCTGCATTTAGGACTGGCAACATGGCTTGCT
GCGCAGCTGGCGGAGATTGGATGGCCGGAGCAGCGGCGGCATAGACATGA
CCAGATTGCTGGGGCATCAGGGACTGCGACTGCTGCACGGGCGACTGTTG
CTGCGGAATTAATGGAGCCTGCTGTGGCCACACCACACTCGCTTGCACCT
GCTGCTGCTGTTGGCCAGCTGGAGCCTGGAGTTGCGCCGGCTGCTGTGGC
ATGTAGATTCCTGTGCGTGACATCCCGTATACAGCCTGGTTGGCCTCGTA
GCCGGGCAGTTGCAGCGTTGGGGATTGCCCCTGAACCTGAACCCCTGACT
GCTCCGCCATCT
BO05940.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-PA | 2028 | CG6495-RA | 1251..2025 | 793..19 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2581 | CG6495-RA | 1622..2415 | 812..19 | 3890 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10763975..10764386 | 793..382 | 2060 | 100 | Minus |
2L | 23513712 | 2L | 10764441..10764805 | 383..19 | 1825 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 01:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2264..2415 | 745..591 | 144 | 59.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6912 | 710..557 | 143 | 60.5 | Minus |
BO05940.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:20 Download gff for
BO05940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1232..2028 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:24 Download gff for
BO05940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1232..2028 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:30 Download gff for
BO05940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 1622..2420 | 13..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:31 Download gff for
BO05940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 1622..2420 | 13..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:31 Download gff for
BO05940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10763956..10764386 | 382..812 | 99 | -> | Minus |
2L | 10764443..10764810 | 13..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:30 Download gff for
BO05940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10763956..10764386 | 382..812 | 99 | -> | Minus |
arm_2L | 10764443..10764810 | 13..381 | 99 | | Minus |
BO05940.5prime Sequence
841 bp (796 high quality bases) assembled on 2005-12-02
> BO05940.5prime
GAAGTTATCAGTCGACATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACGGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCG
BO05940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-PA | 2028 | CG6495-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2581 | CG6495-RA | 387..1215 | 13..841 | 4115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10761825..10762318 | 160..653 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 10761502..10761652 | 13..163 | 740 | 99.3 | Plus |
2L | 23513712 | 2L | 10762525..10762644 | 653..772 | 600 | 100 | Plus |
2L | 23513712 | 2L | 10762716..10762784 | 773..841 | 330 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:08:07 has no hits.
BO05940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:21 Download gff for
BO05940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:25 Download gff for
BO05940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:52 Download gff for
BO05940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 379..1215 | 5..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:16 Download gff for
BO05940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 379..1215 | 5..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:16 Download gff for
BO05940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10761494..10761650 | 5..161 | 97 | -> | Plus |
2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
2L | 10762716..10762784 | 773..841 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:52 Download gff for
BO05940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10761494..10761650 | 5..161 | 97 | -> | Plus |
arm_2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
arm_2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
arm_2L | 10762716..10762784 | 773..841 | 98 | | Plus |
BO05940.complete Sequence
2059 bp assembled on 2008-08-14
GenBank Submission: FJ638632
> BO05940.complete
GAAGTTATCAGTCGACATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACCGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCGATGGTGTCG
CAGTATGTGCCCGTGCAGAACGTGCAACAGACACAGCAGGTCGTGGCCCA
GCAGATGCAGCAGCAGCAACCGCAGCAGCAACAGCAACAGCCGCAGCAGC
AACCACAACATGTCATTGTTTTGGGACCACCACCGCCACCGCCGCCTCCA
CCGCCCATGGTGAACAATCGTGAAGATGCCGCTGCCTGGGCCAACCGCAA
GATGATTGCCGAAGGGCAGCAGCAGCTGCCGCAGCAGCAACTGCAACAGC
AACAGCAGCAACAATCATCGCAGCCAAAGACGGAGATCATCAACACGGAC
GCACAGAGCCACATATTTAGCCATAAAGGCGGCCTCCAGCTGCAGCAGCC
CGCAAACGGACAGGGTCCACCGCCGTCGCCACTCCAGGTTCCGGGTCAGA
TGGCGGGAGCAGGTCAGGTTCAGGTTCAGGGGCAATCCCCAACGCTGCAA
CTGCCCGGCTACGAGGCCAACCAGGCTGTATACGGGATGTCACGCACAGG
AATCTACATGCCACAGCAGCCGGCGCAACTCCAGGCTCCAGCTGGCCAAC
AGCAGCAGCAGGTGCAAGCGAGTGTGGTGTGGCCACAGCAGGCTCCATTA
ATTCCGCAGCAACAGTCGCCCGTGCAGCAGTCGCAGTCCCTGATGCCCCA
GCAATCTGGTCATGTCTATGCCGCCGCTGCTCCGGCCATCCAATCTCCGC
CAGCTGCGCAGCAAGCCATGTTGCCAGTCCTAAATGCAGCACCCGTAGCT
GGGAAAAATCAGGGTCCAGCGGCAGATGGGGACTACGATGATTACGATGA
GGAAACGTACACGGAGGCACCAAAAAAGAAGCAGCACAAACACAAGAAGG
TCAAGACGAAGACGGCCAAGGATCCCATTGAACTTGCCCTGGAGCAAAAC
AAGTTGCAACCGGAGGGATCCCTTCCAGCCCTGCCGGTTCCCGCTTCCCC
CGTCCACGAGCAGTACAAGATGATCCATGACAACCTGGCGATGGAGTTCC
GCGATCACGACGGTCACTCGGAGCGACCTGGCGGGGCGGTCCTCTCGCTG
ACTCTGGGCCTGCTGGTCACCGCTGCGCTGGCCATTCTTATCGGGTGCAG
GATGCGGACGGTGACGCGGAGGGCACGACGACTGGGCGGCAAGACGCCCT
ACTCACAGGAGGCGGACTTCCTGGTCAACGGCATGTATCTGGCAAGCTTT
CTAGACCAT
BO05940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2028 | CG6495-PA | 1..2025 | 17..2041 | 10125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-RA | 2581 | CG6495-RA | 387..2415 | 13..2041 | 10130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10763856..10764386 | 1148..1678 | 2655 | 100 | Plus |
2L | 23513712 | 2L | 10761825..10762318 | 160..653 | 2470 | 100 | Plus |
2L | 23513712 | 2L | 10762716..10763091 | 773..1148 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 10764441..10764805 | 1677..2041 | 1825 | 100 | Plus |
2L | 23513712 | 2L | 10761502..10761652 | 13..163 | 740 | 99.3 | Plus |
2L | 23513712 | 2L | 10762525..10762644 | 653..772 | 600 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2264..2415 | 1315..1469 | 144 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6912 | 1350..1503 | 143 | 60.5 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 898..937 | 983..1022 | 119 | 77.5 | Plus |
BO05940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:47 Download gff for
BO05940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 348..2389 | 5..2047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:44 Download gff for
BO05940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 391..2415 | 17..2043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:05 Download gff for
BO05940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 360..2384 | 17..2043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:01 Download gff for
BO05940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6495-RA | 391..2415 | 17..2043 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:01 Download gff for
BO05940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10761506..10761650 | 17..161 | 100 | -> | Plus |
2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
2L | 10762716..10763091 | 773..1148 | 100 | -> | Plus |
2L | 10763857..10764386 | 1149..1678 | 100 | -> | Plus |
2L | 10764443..10764805 | 1679..2043 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:44 Download gff for
BO05940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10761506..10761650 | 17..161 | 100 | -> | Plus |
arm_2L | 10761827..10762318 | 162..653 | 100 | -> | Plus |
arm_2L | 10762526..10762644 | 654..772 | 100 | -> | Plus |
arm_2L | 10762716..10763091 | 773..1148 | 100 | -> | Plus |
arm_2L | 10763857..10764386 | 1149..1678 | 100 | -> | Plus |
arm_2L | 10764443..10764805 | 1679..2043 | 99 | | Plus |
BO05940.pep Sequence
Translation from 16 to 2059
> BO05940.pep
MIANLALPFLLMIAEAAATAEQVKYLEYLQSSPAEHRLSKRMDLEVCIGH
FDVHKNTIIRTGESQAIGGKYLQGIELDTIEECERLCCETDACDVYIFER
KAGGYCYLFECGPPEDFRCKFTRHANYTSAVLNPQPKPVGELVTTPRPQL
PHIPSNNVSQQEWELSNLKLKPEARDKPTVSTAAVVAPTSGTGTGTGVGL
GVGQSPVYQSQSVPAAHCGRFQFTCHSGECIAVYNACDGIPQCEDGSDEG
PECNIVLSTATKPATTSSNLEPVKPMVSQYVPVQNVQQTQQVVAQQMQQQ
QPQQQQQQPQQQPQHVIVLGPPPPPPPPPPMVNNREDAAAWANRKMIAEG
QQQLPQQQLQQQQQQQSSQPKTEIINTDAQSHIFSHKGGLQLQQPANGQG
PPPSPLQVPGQMAGAGQVQVQGQSPTLQLPGYEANQAVYGMSRTGIYMPQ
QPAQLQAPAGQQQQQVQASVVWPQQAPLIPQQQSPVQQSQSLMPQQSGHV
YAAAAPAIQSPPAAQQAMLPVLNAAPVAGKNQGPAADGDYDDYDEETYTE
APKKKQHKHKKVKTKTAKDPIELALEQNKLQPEGSLPALPVPASPVHEQY
KMIHDNLAMEFRDHDGHSERPGGAVLSLTLGLLVTAALAILIGCRMRTVT
RRARRLGGKTPYSQEADFLVNGMYLASFLDH
BO05940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6495-PA | 675 | CG6495-PA | 1..675 | 1..675 | 3561 | 100 | Plus |
ptip-PA | 2294 | CG32133-PA | 795..1037 | 267..530 | 206 | 29.7 | Plus |
Wnk-PN | 2441 | CG7177-PN | 987..1306 | 284..603 | 203 | 29.3 | Plus |
Wnk-PL | 2441 | CG7177-PL | 987..1306 | 284..603 | 203 | 29.3 | Plus |
Wnk-PM | 2462 | CG7177-PM | 987..1306 | 284..603 | 203 | 29.3 | Plus |
ptip-PA | 2294 | CG32133-PA | 849..1117 | 263..496 | 196 | 29.4 | Plus |
ptip-PA | 2294 | CG32133-PA | 700..915 | 279..488 | 193 | 31.7 | Plus |
ptip-PA | 2294 | CG32133-PA | 1147..1438 | 275..602 | 190 | 28.7 | Plus |
ptip-PA | 2294 | CG32133-PA | 559..906 | 264..570 | 187 | 26.1 | Plus |
Wnk-PN | 2441 | CG7177-PN | 1054..1397 | 271..582 | 173 | 26.2 | Plus |
Wnk-PL | 2441 | CG7177-PL | 1054..1397 | 271..582 | 173 | 26.2 | Plus |
ptip-PA | 2294 | CG32133-PA | 439..749 | 241..512 | 172 | 26.6 | Plus |
ptip-PA | 2294 | CG32133-PA | 408..654 | 271..512 | 169 | 29.3 | Plus |
ptip-PA | 2294 | CG32133-PA | 198..449 | 259..512 | 164 | 29.2 | Plus |