Clone BO05940 Report

Search the DGRC for BO05940

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:59
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG6495-RA
Protein status:BO05940.pep: Imported from assembly
Sequenced Size:2059

Clone Sequence Records

BO05940.3prime Sequence

812 bp (734 high quality bases) assembled on 2005-12-02

> BO05940.3prime
ATGGTCTAGAAAGCTTGCCAGATACATGCCGTTGACCAGGAAGTCCGCCT
CCTGTGAGTAGGGCGTCTTGCCGCCCAGTCGTCGTGCCCTCCGCGTCACC
GTCCGCATCCTGCACCCGATAAGAATGGCCAGCGCAGCGGTGACCAGCAG
GCCCAGAGTCAGCGAGAGGACCGCCCCGCCAGGTCGCTCCGAGTGACCGT
CGTGATCGCGGAACTCCATCGCCAGGTTGTCATGGATCATCTTGTACTGC
TCGTGGACGGGGGAAGCGGGAACCGGCAGGGCTGGAAGGGATCCCTCCGG
TTGCAACTTGTTTTGCTCCAGGGCAAGTTCAATGGGATCCTTGGCCGTCT
TCGTCTTGACCTTCTTGTGTTTGTGCTGCTTCTTTTTTGGTGCCTCCGTG
TACGTTTCCTCATCGTAATCATCGTAGTCCCCATCTGCCGCTGGACCCTG
ATTTTTCCCAGCTACGGGTGCTGCATTTAGGACTGGCAACATGGCTTGCT
GCGCAGCTGGCGGAGATTGGATGGCCGGAGCAGCGGCGGCATAGACATGA
CCAGATTGCTGGGGCATCAGGGACTGCGACTGCTGCACGGGCGACTGTTG
CTGCGGAATTAATGGAGCCTGCTGTGGCCACACCACACTCGCTTGCACCT
GCTGCTGCTGTTGGCCAGCTGGAGCCTGGAGTTGCGCCGGCTGCTGTGGC
ATGTAGATTCCTGTGCGTGACATCCCGTATACAGCCTGGTTGGCCTCGTA
GCCGGGCAGTTGCAGCGTTGGGGATTGCCCCTGAACCTGAACCCCTGACT
GCTCCGCCATCT

BO05940.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-PA 2028 CG6495-RA 1251..2025 793..19 3875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2581 CG6495-RA 1622..2415 812..19 3890 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10763975..10764386 793..382 2060 100 Minus
2L 23513712 2L 10764441..10764805 383..19 1825 100 Minus
Blast to na_te.dros performed 2015-02-12 01:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2415 745..591 144 59.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6912 710..557 143 60.5 Minus

BO05940.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:20 Download gff for BO05940.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1232..2028 15..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:24 Download gff for BO05940.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1232..2028 15..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:30 Download gff for BO05940.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 1622..2420 13..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:31 Download gff for BO05940.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 1622..2420 13..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:31 Download gff for BO05940.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10763956..10764386 382..812 99 -> Minus
2L 10764443..10764810 13..381 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:30 Download gff for BO05940.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10763956..10764386 382..812 99 -> Minus
arm_2L 10764443..10764810 13..381 99   Minus

BO05940.5prime Sequence

841 bp (796 high quality bases) assembled on 2005-12-02

> BO05940.5prime
GAAGTTATCAGTCGACATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACGGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCG

BO05940.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-PA 2028 CG6495-RA 1..825 17..841 4100 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2581 CG6495-RA 387..1215 13..841 4115 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:08:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10761825..10762318 160..653 2470 100 Plus
2L 23513712 2L 10761502..10761652 13..163 740 99.3 Plus
2L 23513712 2L 10762525..10762644 653..772 600 100 Plus
2L 23513712 2L 10762716..10762784 773..841 330 98.6 Plus
Blast to na_te.dros performed on 2015-02-12 16:08:07 has no hits.

BO05940.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:21 Download gff for BO05940.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:25 Download gff for BO05940.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:11:52 Download gff for BO05940.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 379..1215 5..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:44:16 Download gff for BO05940.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 379..1215 5..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:44:16 Download gff for BO05940.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10761494..10761650 5..161 97 -> Plus
2L 10761827..10762318 162..653 100 -> Plus
2L 10762526..10762644 654..772 100 -> Plus
2L 10762716..10762784 773..841 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:11:52 Download gff for BO05940.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10761494..10761650 5..161 97 -> Plus
arm_2L 10761827..10762318 162..653 100 -> Plus
arm_2L 10762526..10762644 654..772 100 -> Plus
arm_2L 10762716..10762784 773..841 98   Plus

BO05940.complete Sequence

2059 bp assembled on 2008-08-14

GenBank Submission: FJ638632

> BO05940.complete
GAAGTTATCAGTCGACATGATTGCCAACTTGGCGTTGCCTTTCCTGCTGA
TGATCGCGGAAGCAGCAGCCACCGCGGAGCAGGTGAAGTACCTGGAGTAC
CTGCAATCTTCGCCGGCGGAGCACCGGCTTAGCAAACGCATGGATCTGGA
GGTGTGCATAGGTCATTTTGATGTGCATAAGAACACCATTATTCGCACGG
GAGAGTCGCAGGCGATTGGTGGCAAGTACCTCCAGGGCATTGAGCTGGAC
ACCATCGAGGAATGCGAAAGGCTGTGCTGCGAGACGGACGCCTGCGATGT
GTACATCTTCGAGCGGAAGGCGGGTGGCTATTGCTACCTCTTCGAGTGCG
GTCCTCCGGAGGATTTCCGCTGCAAGTTCACCAGGCACGCCAACTACACG
AGTGCCGTGCTGAATCCACAGCCAAAGCCAGTCGGTGAGCTGGTGACCAC
ACCGCGTCCGCAGTTGCCCCACATCCCCAGCAACAATGTGTCGCAGCAGG
AATGGGAGCTGAGCAACCTGAAGCTAAAGCCGGAAGCGCGCGACAAGCCC
ACTGTTTCCACCGCCGCAGTGGTGGCTCCCACATCGGGAACGGGAACGGG
AACGGGAGTGGGTCTGGGAGTGGGCCAGTCGCCAGTTTACCAATCGCAAA
GTGTTCCCGCCGCGCATTGTGGACGCTTCCAGTTCACCTGCCACTCCGGC
GAGTGCATCGCGGTGTACAATGCCTGCGATGGAATACCCCAGTGCGAGGA
TGGCAGCGACGAGGGACCGGAATGCAACATCGTGCTGTCGACGGCCACAA
AACCGGCCACTACCAGCAGCAATTTGGAGCCCGTGAAGCCGATGGTGTCG
CAGTATGTGCCCGTGCAGAACGTGCAACAGACACAGCAGGTCGTGGCCCA
GCAGATGCAGCAGCAGCAACCGCAGCAGCAACAGCAACAGCCGCAGCAGC
AACCACAACATGTCATTGTTTTGGGACCACCACCGCCACCGCCGCCTCCA
CCGCCCATGGTGAACAATCGTGAAGATGCCGCTGCCTGGGCCAACCGCAA
GATGATTGCCGAAGGGCAGCAGCAGCTGCCGCAGCAGCAACTGCAACAGC
AACAGCAGCAACAATCATCGCAGCCAAAGACGGAGATCATCAACACGGAC
GCACAGAGCCACATATTTAGCCATAAAGGCGGCCTCCAGCTGCAGCAGCC
CGCAAACGGACAGGGTCCACCGCCGTCGCCACTCCAGGTTCCGGGTCAGA
TGGCGGGAGCAGGTCAGGTTCAGGTTCAGGGGCAATCCCCAACGCTGCAA
CTGCCCGGCTACGAGGCCAACCAGGCTGTATACGGGATGTCACGCACAGG
AATCTACATGCCACAGCAGCCGGCGCAACTCCAGGCTCCAGCTGGCCAAC
AGCAGCAGCAGGTGCAAGCGAGTGTGGTGTGGCCACAGCAGGCTCCATTA
ATTCCGCAGCAACAGTCGCCCGTGCAGCAGTCGCAGTCCCTGATGCCCCA
GCAATCTGGTCATGTCTATGCCGCCGCTGCTCCGGCCATCCAATCTCCGC
CAGCTGCGCAGCAAGCCATGTTGCCAGTCCTAAATGCAGCACCCGTAGCT
GGGAAAAATCAGGGTCCAGCGGCAGATGGGGACTACGATGATTACGATGA
GGAAACGTACACGGAGGCACCAAAAAAGAAGCAGCACAAACACAAGAAGG
TCAAGACGAAGACGGCCAAGGATCCCATTGAACTTGCCCTGGAGCAAAAC
AAGTTGCAACCGGAGGGATCCCTTCCAGCCCTGCCGGTTCCCGCTTCCCC
CGTCCACGAGCAGTACAAGATGATCCATGACAACCTGGCGATGGAGTTCC
GCGATCACGACGGTCACTCGGAGCGACCTGGCGGGGCGGTCCTCTCGCTG
ACTCTGGGCCTGCTGGTCACCGCTGCGCTGGCCATTCTTATCGGGTGCAG
GATGCGGACGGTGACGCGGAGGGCACGACGACTGGGCGGCAAGACGCCCT
ACTCACAGGAGGCGGACTTCCTGGTCAACGGCATGTATCTGGCAAGCTTT
CTAGACCAT

BO05940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2028 CG6495-PA 1..2025 17..2041 10125 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-RA 2581 CG6495-RA 387..2415 13..2041 10130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10763856..10764386 1148..1678 2655 100 Plus
2L 23513712 2L 10761825..10762318 160..653 2470 100 Plus
2L 23513712 2L 10762716..10763091 773..1148 1880 100 Plus
2L 23513712 2L 10764441..10764805 1677..2041 1825 100 Plus
2L 23513712 2L 10761502..10761652 13..163 740 99.3 Plus
2L 23513712 2L 10762525..10762644 653..772 600 100 Plus
Blast to na_te.dros performed 2014-11-27 23:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2264..2415 1315..1469 144 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6760..6912 1350..1503 143 60.5 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 898..937 983..1022 119 77.5 Plus

BO05940.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:47 Download gff for BO05940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 348..2389 5..2047 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:44 Download gff for BO05940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 391..2415 17..2043 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:05 Download gff for BO05940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 360..2384 17..2043 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:01 Download gff for BO05940.complete
Subject Subject Range Query Range Percent Splice Strand
CG6495-RA 391..2415 17..2043 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:01 Download gff for BO05940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10761506..10761650 17..161 100 -> Plus
2L 10761827..10762318 162..653 100 -> Plus
2L 10762526..10762644 654..772 100 -> Plus
2L 10762716..10763091 773..1148 100 -> Plus
2L 10763857..10764386 1149..1678 100 -> Plus
2L 10764443..10764805 1679..2043 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:44 Download gff for BO05940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10761506..10761650 17..161 100 -> Plus
arm_2L 10761827..10762318 162..653 100 -> Plus
arm_2L 10762526..10762644 654..772 100 -> Plus
arm_2L 10762716..10763091 773..1148 100 -> Plus
arm_2L 10763857..10764386 1149..1678 100 -> Plus
arm_2L 10764443..10764805 1679..2043 99   Plus

BO05940.pep Sequence

Translation from 16 to 2059

> BO05940.pep
MIANLALPFLLMIAEAAATAEQVKYLEYLQSSPAEHRLSKRMDLEVCIGH
FDVHKNTIIRTGESQAIGGKYLQGIELDTIEECERLCCETDACDVYIFER
KAGGYCYLFECGPPEDFRCKFTRHANYTSAVLNPQPKPVGELVTTPRPQL
PHIPSNNVSQQEWELSNLKLKPEARDKPTVSTAAVVAPTSGTGTGTGVGL
GVGQSPVYQSQSVPAAHCGRFQFTCHSGECIAVYNACDGIPQCEDGSDEG
PECNIVLSTATKPATTSSNLEPVKPMVSQYVPVQNVQQTQQVVAQQMQQQ
QPQQQQQQPQQQPQHVIVLGPPPPPPPPPPMVNNREDAAAWANRKMIAEG
QQQLPQQQLQQQQQQQSSQPKTEIINTDAQSHIFSHKGGLQLQQPANGQG
PPPSPLQVPGQMAGAGQVQVQGQSPTLQLPGYEANQAVYGMSRTGIYMPQ
QPAQLQAPAGQQQQQVQASVVWPQQAPLIPQQQSPVQQSQSLMPQQSGHV
YAAAAPAIQSPPAAQQAMLPVLNAAPVAGKNQGPAADGDYDDYDEETYTE
APKKKQHKHKKVKTKTAKDPIELALEQNKLQPEGSLPALPVPASPVHEQY
KMIHDNLAMEFRDHDGHSERPGGAVLSLTLGLLVTAALAILIGCRMRTVT
RRARRLGGKTPYSQEADFLVNGMYLASFLDH

BO05940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6495-PA 675 CG6495-PA 1..675 1..675 3561 100 Plus
ptip-PA 2294 CG32133-PA 795..1037 267..530 206 29.7 Plus
Wnk-PN 2441 CG7177-PN 987..1306 284..603 203 29.3 Plus
Wnk-PL 2441 CG7177-PL 987..1306 284..603 203 29.3 Plus
Wnk-PM 2462 CG7177-PM 987..1306 284..603 203 29.3 Plus
ptip-PA 2294 CG32133-PA 849..1117 263..496 196 29.4 Plus
ptip-PA 2294 CG32133-PA 700..915 279..488 193 31.7 Plus
ptip-PA 2294 CG32133-PA 1147..1438 275..602 190 28.7 Plus
ptip-PA 2294 CG32133-PA 559..906 264..570 187 26.1 Plus
Wnk-PN 2441 CG7177-PN 1054..1397 271..582 173 26.2 Plus
Wnk-PL 2441 CG7177-PL 1054..1397 271..582 173 26.2 Plus
ptip-PA 2294 CG32133-PA 439..749 241..512 172 26.6 Plus
ptip-PA 2294 CG32133-PA 408..654 271..512 169 29.3 Plus
ptip-PA 2294 CG32133-PA 198..449 259..512 164 29.2 Plus