Clone Sequence Records
BO05944.3prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-02
> BO05944.3prime
ATGGTCTAGAAAGCTTGCTCCAATTGCCTTGGCCATGTCCTTCAGCGCCT
CGGAGCGATGTGCGTTGCGCATCTGCTTGTTAAGGATATCGAAGATGCGG
TTGTACTTGCTGTCGGTTTCCGTGCGGCAGATGGCGCAGAACTGCGAGGA
CAGCACGTTGAGTGGACTACGGAAGTACAGGCTCTTCTGCATGGTGAGAC
CGTTCCTGTGGTGGGACATCATGTGCAGGACGATCTCGATGAGGGCCAGC
GTGGCTCCAATGACGAAGTTGTAGCAGAAGAGCGTGGGCACCAGGAACAG
CAAGTAGGGGTTGCGGTTGTAGCCCAGGATTATGTTGTTGCTCACGCCAT
CCATTTGACAATAGTCCTCGCGTTCGTAGCCCGGAGTGACCTTTTTGGGT
GCCCTGTTGGGAATCGCGGTGGCTGCCCCATATCTCACCGTATTGGCCAG
CTCGTCGTCTACCTCATCGCATATGGTTCCGCGGAGATAGTGCTTGGGTA
CATGGAAATTCGTGTGTTTGCGGAAGTGAACCTTGGTCACCTGGTCGTGG
ATCGGTTCACCGGTCTCCTCATCGAAGGCCGGTCTATTAACGCGGACGGT
GTCTGTGTAGAAGTACTCCAACTCACCCGTTTCGCAGTTCTTAATGGAAT
AACCCATGTCGACTGATAACT
BO05944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-PA | 642 | CG1927-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 1198 | CG1927-RA | 462..1101 | 658..19 | 3200 | 100 | Minus |
CG1927-RB | 744 | CG1927-RB | 26..647 | 640..19 | 3110 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1966822..1967139 | 19..336 | 1590 | 100 | Plus |
3L | 28110227 | 3L | 1967200..1967504 | 337..641 | 1525 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:18 has no hits.
BO05944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:24 Download gff for
BO05944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 15..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:29 Download gff for
BO05944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 15..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:13 Download gff for
BO05944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 12..665 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:19 Download gff for
BO05944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 12..665 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:19 Download gff for
BO05944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1966816..1967139 | 12..336 | 99 | <- | Plus |
3L | 1967200..1967502 | 337..639 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:13 Download gff for
BO05944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1966816..1967139 | 12..336 | 99 | <- | Plus |
arm_3L | 1967200..1967502 | 337..639 | 100 | <- | Plus |
BO05944.5prime Sequence
671 bp (670 high quality bases) assembled on 2005-11-29
> BO05944.5prime
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGAGCAAGCTTTCTAGACC
BO05944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-PA | 642 | CG1927-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 1198 | CG1927-RA | 462..1101 | 16..655 | 3200 | 100 | Plus |
CG1927-RB | 744 | CG1927-RB | 26..647 | 34..655 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1966822..1967139 | 655..338 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 1967200..1967504 | 337..33 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:45:24 has no hits.
BO05944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:24 Download gff for
BO05944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:30 Download gff for
BO05944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-PA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:18 Download gff for
BO05944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:30 Download gff for
BO05944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 455..1107 | 9..662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:30 Download gff for
BO05944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1966816..1967139 | 338..662 | 99 | <- | Minus |
3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:18 Download gff for
BO05944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1966816..1967139 | 338..662 | 99 | <- | Minus |
arm_3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
BO05944.complete Sequence
673 bp (673 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630204
> BO05944.complete
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGAGCAAGCTTTCTAGACCAT
BO05944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 642 | CG1927-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
CG1927-RB | 633 | CG1927-PB | 9..630 | 34..655 | 3110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-RA | 1198 | CG1927-RA | 462..1101 | 16..655 | 3200 | 100 | Plus |
CG1927-RB | 744 | CG1927-RB | 26..647 | 34..655 | 3110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1966822..1967139 | 655..338 | 1590 | 100 | Minus |
3L | 28110227 | 3L | 1967200..1967504 | 337..33 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:44:35 has no hits.
BO05944.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:46 Download gff for
BO05944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:54:54 Download gff for
BO05944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 451..1103 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:36 Download gff for
BO05944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 463..1101 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:47 Download gff for
BO05944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 451..1103 | 9..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:21 Download gff for
BO05944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1927-RA | 463..1101 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:21 Download gff for
BO05944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1966820..1967139 | 338..657 | 99 | <- | Minus |
3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
3L | 1969600..1969617 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:36 Download gff for
BO05944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1967200..1967502 | 35..337 | 100 | <- | Minus |
arm_3L | 1969600..1969617 | 17..34 | 100 | | Minus |
arm_3L | 1966820..1967139 | 338..657 | 99 | <- | Minus |
BO05944.pep Sequence
Translation from 16 to 673
> BO05944.pep
MGYSIKNCETGELEYFYTDTVRVNRPAFDEETGEPIHDQVTKVHFRKHTN
FHVPKHYLRGTICDEVDDELANTVRYGAATAIPNRAPKKVTPGYEREDYC
QMDGVSNNIILGYNRNPYLLFLVPTLFCYNFVIGATLALIEIVLHMMSHH
RNGLTMQKSLYFRSPLNVLSSQFCAICRTETDSKYNRIFDILNKQMRNAH
RSEALKDMAKAIGASFLDH
BO05944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1927-PA | 213 | CG1927-PA | 1..213 | 1..213 | 1140 | 100 | Plus |
CG1927-PB | 210 | CG1927-PB | 4..210 | 7..213 | 1109 | 100 | Plus |