Clone BO05944 Report

Search the DGRC for BO05944

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:59
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG1927-RA
Protein status:BO05944.pep: validated full length
Sequenced Size:673

Clone Sequence Records

BO05944.3prime Sequence

671 bp (670 high quality bases) assembled on 2005-12-02

> BO05944.3prime
ATGGTCTAGAAAGCTTGCTCCAATTGCCTTGGCCATGTCCTTCAGCGCCT
CGGAGCGATGTGCGTTGCGCATCTGCTTGTTAAGGATATCGAAGATGCGG
TTGTACTTGCTGTCGGTTTCCGTGCGGCAGATGGCGCAGAACTGCGAGGA
CAGCACGTTGAGTGGACTACGGAAGTACAGGCTCTTCTGCATGGTGAGAC
CGTTCCTGTGGTGGGACATCATGTGCAGGACGATCTCGATGAGGGCCAGC
GTGGCTCCAATGACGAAGTTGTAGCAGAAGAGCGTGGGCACCAGGAACAG
CAAGTAGGGGTTGCGGTTGTAGCCCAGGATTATGTTGTTGCTCACGCCAT
CCATTTGACAATAGTCCTCGCGTTCGTAGCCCGGAGTGACCTTTTTGGGT
GCCCTGTTGGGAATCGCGGTGGCTGCCCCATATCTCACCGTATTGGCCAG
CTCGTCGTCTACCTCATCGCATATGGTTCCGCGGAGATAGTGCTTGGGTA
CATGGAAATTCGTGTGTTTGCGGAAGTGAACCTTGGTCACCTGGTCGTGG
ATCGGTTCACCGGTCTCCTCATCGAAGGCCGGTCTATTAACGCGGACGGT
GTCTGTGTAGAAGTACTCCAACTCACCCGTTTCGCAGTTCTTAATGGAAT
AACCCATGTCGACTGATAACT

BO05944.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-PA 642 CG1927-RA 1..639 657..19 3195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 1198 CG1927-RA 462..1101 658..19 3200 100 Minus
CG1927-RB 744 CG1927-RB 26..647 640..19 3110 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1966822..1967139 19..336 1590 100 Plus
3L 28110227 3L 1967200..1967504 337..641 1525 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:59:18 has no hits.

BO05944.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:24 Download gff for BO05944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 15..657 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:29 Download gff for BO05944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 15..657 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:13 Download gff for BO05944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 12..665 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:19 Download gff for BO05944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 12..665 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:19 Download gff for BO05944.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1966816..1967139 12..336 99 <- Plus
3L 1967200..1967502 337..639 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:13 Download gff for BO05944.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1966816..1967139 12..336 99 <- Plus
arm_3L 1967200..1967502 337..639 100 <- Plus

BO05944.5prime Sequence

671 bp (670 high quality bases) assembled on 2005-11-29

> BO05944.5prime
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGAGCAAGCTTTCTAGACC

BO05944.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-PA 642 CG1927-RA 1..639 17..655 3195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 1198 CG1927-RA 462..1101 16..655 3200 100 Plus
CG1927-RB 744 CG1927-RB 26..647 34..655 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1966822..1967139 655..338 1590 100 Minus
3L 28110227 3L 1967200..1967504 337..33 1525 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:45:24 has no hits.

BO05944.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:24 Download gff for BO05944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 17..659 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:30 Download gff for BO05944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-PA 1..642 17..659 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:18 Download gff for BO05944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 9..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:30 Download gff for BO05944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 455..1107 9..662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:30 Download gff for BO05944.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1966816..1967139 338..662 99 <- Minus
3L 1967200..1967502 35..337 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:18 Download gff for BO05944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1966816..1967139 338..662 99 <- Minus
arm_3L 1967200..1967502 35..337 100 <- Minus

BO05944.complete Sequence

673 bp (673 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630204

> BO05944.complete
GAAGTTATCAGTCGACATGGGTTATTCCATTAAGAACTGCGAAACGGGTG
AGTTGGAGTACTTCTACACAGACACCGTCCGCGTTAATAGACCGGCCTTC
GATGAGGAGACCGGTGAACCGATCCACGACCAGGTGACCAAGGTTCACTT
CCGCAAACACACGAATTTCCATGTACCCAAGCACTATCTCCGCGGAACCA
TATGCGATGAGGTAGACGACGAGCTGGCCAATACGGTGAGATATGGGGCA
GCCACCGCGATTCCCAACAGGGCACCCAAAAAGGTCACTCCGGGCTACGA
ACGCGAGGACTATTGTCAAATGGATGGCGTGAGCAACAACATAATCCTGG
GCTACAACCGCAACCCCTACTTGCTGTTCCTGGTGCCCACGCTCTTCTGC
TACAACTTCGTCATTGGAGCCACGCTGGCCCTCATCGAGATCGTCCTGCA
CATGATGTCCCACCACAGGAACGGTCTCACCATGCAGAAGAGCCTGTACT
TCCGTAGTCCACTCAACGTGCTGTCCTCGCAGTTCTGCGCCATCTGCCGC
ACGGAAACCGACAGCAAGTACAACCGCATCTTCGATATCCTTAACAAGCA
GATGCGCAACGCACATCGCTCCGAGGCGCTGAAGGACATGGCCAAGGCAA
TTGGAGCAAGCTTTCTAGACCAT

BO05944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 642 CG1927-PA 1..639 17..655 3195 100 Plus
CG1927-RB 633 CG1927-PB 9..630 34..655 3110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-RA 1198 CG1927-RA 462..1101 16..655 3200 100 Plus
CG1927-RB 744 CG1927-RB 26..647 34..655 3110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1966822..1967139 655..338 1590 100 Minus
3L 28110227 3L 1967200..1967504 337..33 1525 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:44:35 has no hits.

BO05944.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:46 Download gff for BO05944.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 1..642 17..659 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:54:54 Download gff for BO05944.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 451..1103 9..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:08:36 Download gff for BO05944.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 463..1101 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:47 Download gff for BO05944.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 451..1103 9..662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:21 Download gff for BO05944.complete
Subject Subject Range Query Range Percent Splice Strand
CG1927-RA 463..1101 17..657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:21 Download gff for BO05944.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1966820..1967139 338..657 99 <- Minus
3L 1967200..1967502 35..337 100 <- Minus
3L 1969600..1969617 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:08:36 Download gff for BO05944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1967200..1967502 35..337 100 <- Minus
arm_3L 1969600..1969617 17..34 100   Minus
arm_3L 1966820..1967139 338..657 99 <- Minus

BO05944.pep Sequence

Translation from 16 to 673

> BO05944.pep
MGYSIKNCETGELEYFYTDTVRVNRPAFDEETGEPIHDQVTKVHFRKHTN
FHVPKHYLRGTICDEVDDELANTVRYGAATAIPNRAPKKVTPGYEREDYC
QMDGVSNNIILGYNRNPYLLFLVPTLFCYNFVIGATLALIEIVLHMMSHH
RNGLTMQKSLYFRSPLNVLSSQFCAICRTETDSKYNRIFDILNKQMRNAH
RSEALKDMAKAIGASFLDH

BO05944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1927-PA 213 CG1927-PA 1..213 1..213 1140 100 Plus
CG1927-PB 210 CG1927-PB 4..210 7..213 1109 100 Plus