Clone BO05953 Report

Search the DGRC for BO05953

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:59
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG17841-RA
Protein status:BO05953.pep: validated full length
Sequenced Size:1321

Clone Sequence Records

BO05953.3prime Sequence

934 bp (762 high quality bases) assembled on 2005-12-02

> BO05953.3prime
ATGGTCTAGAAAGCTTGCATTTTTGCCATTTATAAGGGCGGTGGGGGTTG
GTGTGGGCACGGCCGCCGACTTTGCCGATAGAACTGCGTTGGGCGGCCGT
CTCTTTTGCGGTAGAAAGACCTTGAGAGCACCCAAAACCATCAGATAGAA
CCAGTAGAGCTGTGGCAAGAACAGTATAGCGATGCTGATGAGGCATCCTC
GCGGCAGGCCCCACATGGCCGACCACAGGGATGCAGCCTCAATGGCCAGG
CTGTAGCGCCACATCACGTATGGCCACATGCAGACGCGGCACACGAAGAA
GGTGGCCAGCATCAGCAGACCGTTGGCGATGTACACACGTGAATCCTTGA
GGCGCATGGTGCTCAGGATGCTGCGCAACGAGACGAACGGCGTGGAGAAC
TCCATCATGAACATGTAGCTGTAGATGCAGTGACCGCCACCGCGAATGTA
CGTCACCACCAGCAATCCAAATGTTCCGATGAAGACATGGTGTATCATCA
TGACCGGGTGCGTGACCACGTACTTGAGAAAGTCCCATCTGCCGTCCTTG
GGTATCTGGACACAGGCTCCATCGTAGTCGCAGATCTCGTGCAGATTCGT
TGGAGTGCTGCCGTTGTTGTTGCCGCTGGCCGACTTGCCGTTGACCTTGC
CATTGGCGTGGCCATTGCTCACCACCGCCCCTTGACCCTTGGTAATGCGC
AGCAGGTGCAGCTTGTCGGCGATCTTCTGGGTGTGCACCTTGTACATCGA
CCAGATGTCGTACATAAAGTAAGCAGTGCCGAACCAACCGTACGCCTCCA
TCAAGAAGTGGGATGCATATACAAAGGATTTGGTGCACGTCGACTTGCAG
ACGATGAGTCCCACGAAGAAGGAGAATGAGGCCTGNATTGCCGAGACGAT
TTTGGTTGGTATCTCCAGGACGTCNGACATCATC

BO05953.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PA 1290 CG17841-RA 372..1287 934..19 4467 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 2488 CG17841-RA 676..1591 934..19 4513 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10381655..10382109 905..451 2249 99.6 Minus
X 23542271 X 10382180..10382512 451..119 1665 100 Minus
X 23542271 X 10382580..10382683 122..19 520 100 Minus
Blast to na_te.dros performed 2015-02-11 22:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2431 669..609 116 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2838 669..599 114 63.9 Minus

BO05953.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:34 Download gff for BO05953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 372..1290 18..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:43 Download gff for BO05953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 372..1290 18..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:10 Download gff for BO05953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 676..1591 19..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:07 Download gff for BO05953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 676..1591 19..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:07 Download gff for BO05953.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10368727..10368759 902..934 91 -> Minus
X 10381659..10382109 451..901 99 -> Minus
X 10382181..10382510 121..450 100 -> Minus
X 10382582..10382683 19..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:10 Download gff for BO05953.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10262760..10262792 902..934 91 -> Minus
arm_X 10275692..10276142 451..901 99 -> Minus
arm_X 10276214..10276543 121..450 100 -> Minus
arm_X 10276615..10276716 19..120 100   Minus

BO05953.5prime Sequence

930 bp (791 high quality bases) assembled on 2005-11-29

> BO05953.5prime
GAAGTTATCAGTCGACATGCAGCAGCGCCGACAGCCGGCGAATGGCAACG
GCAGAGGAGGAGGAACCACCGCCGCCGTCCGTACGGAGGAGCAGCAACAA
CAGCAGCAGCCATTGAGTCAGGATGCTGGCGCCAAGGAGGCGGGCAGCAC
GCCGGGCAAGGCAACGGGACGCGGCTGCTATTTCTCGCTGGCCTTCTCCA
TCGGTTCGATGGGCCTGGCCTGCGGCAGCCTGTGGCAGATACCGAACAGC
AGTGACCGCATCTCGCTGCAGCGCGGCCTGGTGCTCACCTCGCTGGGATT
CATCTATTTTGTCTCGCTAACGGACTTCTGCAACAAATACCTGCTGGAGA
CGACGCATGGACAGCGCTTTCGTCGCAAGTACCGCCTGATGATGTCCGAC
GTCCTGGAGATAACCAACAAAATCGTCTCGGCAATCCAGGCCTCATTCTC
CTTCTTCGTGGGACTCATCGTCTGCAAGTCGACGTGCACCAAATCCTTTG
TATATGCATCCCACTTCTTGATGGAGGCGTACGGTTGGTTCGGCACTGCT
TACTTTATGTACGACATCTGGTCGATGTACAAGGTGCACACCCAGAAGAT
CGCCGACAAGCTGCACCTGCTGCGCATTACCAAGGGTCAAGGGGCGGTGG
TGAGCAATGGCCACGCCAATGGCAAGGTCAACGGCAAGTCGGCCAGCGGC
AACAACAACGGCAGCACTCCAACGAATCTGCACGAGATCTGCGACTACGA
TGGAGCCTGTGTCCAGATACCCAAGGACGGCAGATGGGACTTTCTNCAGT
ACGTGGTCACGCACCCGGTCATGATGATACACCATGTCTTCATCGGAACA
TTTGGATTGCTGGTGGTGACGTACATTCGCGGTGGGCGTCACTGCATCTA
CAGCTACATGTTCATGATGGAGTTTCTCAC

BO05953.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PA 1290 CG17841-RA 1..908 17..924 4446 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 2488 CG17841-RA 305..1212 17..924 4484 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10381659..10382109 421..871 2229 99.6 Plus
X 23542271 X 10368356..10368759 17..420 2020 100 Plus
X 23542271 X 10382180..10382233 871..924 240 96.3 Plus
Blast to na_te.dros performed 2015-02-11 04:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6854 19..110 153 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6819 15..123 122 61.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 94..189 29..123 117 60.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9124..9219 29..123 117 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2431 653..713 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2838 653..723 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2834 45..112 112 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1066..1091 85..110 112 92.3 Plus

BO05953.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:35 Download gff for BO05953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 1..912 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:45 Download gff for BO05953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-PA 1..912 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:41 Download gff for BO05953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 301..1216 9..930 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:02 Download gff for BO05953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 301..1216 9..930 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:02 Download gff for BO05953.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10368352..10368759 9..420 99 -> Plus
X 10381659..10382109 421..871 99 -> Plus
X 10382181..10382237 872..930 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:41 Download gff for BO05953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10262385..10262792 9..420 99 -> Plus
arm_X 10275692..10276142 421..871 99 -> Plus
arm_X 10276214..10276270 872..930 93   Plus

BO05953.complete Sequence

1321 bp (1321 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630205

> BO05953.complete
GAAGTTATCAGTCGACATGCAGCAGCGCCGACAGCCGGCGAATGGCAACG
GCAGAGGAGGAGGAACCACCGCCGCCGTCCGTACGGAGGAGCAGCAACAA
CAGCAGCAGCCATTGAGTCAGGATGCTGGCGCCAAGGAGGCGGGCAGCAC
GCCGGGCAAGGCAACGGGACGCGGCTGCTATTTCTCGCTGGCCTTCTCCA
TCGGTTCGATGGGCCTGGCCTGCGGCAGCCTGTGGCAGATACCGAACAGC
AGTGACCGCATCTCGCTGCAGCGCGGCCTGGTGCTCACCTCGCTGGGATT
CATCTATTTTGTCTCGCTAACGGACTTCTGCAACAAATACCTGCTGGAGA
CGACGCATGGACAGCGCTTTCGTCGCAAGTACCGCCTGATGATGTCCGAC
GTCCTGGAGATAACCAACAAAATCGTCTCGGCAATCCAGGCCTCATTCTC
CTTCTTCGTGGGACTCATCGTCTGCAAGTCGACGTGCACCAAATCCTTTG
TATATGCATCCCACTTCTTGATGGAGGCGTACGGTTGGTTCGGCACTGCT
TACTTTATGTACGACATCTGGTCGATGTACAAGGTGCACACCCAGAAGAT
CGCCGACAAGCTGCACCTGCTGCGCATTACCAAGGGTCAAGGGGCGGTGG
TGAGCAATGGCCACGCCAATGGCAAGGTCAACGGCAAGTCGGCCAGCGGC
AACAACAACGGCAGCACTCCAACGAATCTGCACGAGATCTGCGACTACGA
TGGAGCCTGTGTCCAGATACCCAAGGACGGCAGATGGGACTTTCTCAAGT
ACGTGGTCACGCACCCGGTCATGATGATACACCATGTCTTCATCGGAACA
TTTGGATTGCTGGTGGTGACGTACATTCGCGGTGGCGGTCACTGCATCTA
CAGCTACATGTTCATGATGGAGTTCTCCACGCCGTTCGTCTCGTTGCGCA
GCATCCTGAGCACCATGCGCCTCAAGGATTCACGTGTGTACATCGCCAAC
GGTCTGCTGATGCTGGCCACCTTCTTCGTGTGCCGCGTCTGCATGTGGCC
ATACGTGATGTGGCGCTACAGCCTGGCCATTGAGGCTGCATCCCTGTGGT
CGGCCATGTGGGGCCTGCCGCGAGGATGCCTCATCAGCATCGCTATACTG
TTCTTGCCACAGCTCTACTGGTTCTATCTGATGGTTTTGGGTGCTCTCAA
GGTCTTTCTACCGCAAAAGAGACGGCCGCCCAACGCAGTTCTATCGGCAA
AGTCGGCGGCCGTGCCCACACCAACCCCCACCGCCCTTATAAATGGCAAA
AATGCAAGCTTTCTAGACCAT

BO05953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 1290 CG17841-PA 1..1287 17..1303 6435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-RA 2488 CG17841-RA 305..1591 17..1303 6435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10381659..10382109 421..871 2255 100 Plus
X 23542271 X 10368356..10368759 17..420 2020 100 Plus
X 23542271 X 10382180..10382512 871..1203 1665 100 Plus
X 23542271 X 10382580..10382683 1200..1303 520 100 Plus
Blast to na_te.dros performed 2014-11-28 08:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6854 19..110 153 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6819 15..123 122 61.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 94..189 29..123 117 60.8 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9124..9219 29..123 117 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2431 653..713 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2767..2838 653..723 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2834 45..112 112 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1066..1091 85..110 112 92.3 Plus

BO05953.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:33 Download gff for BO05953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 1..1290 17..1304 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:22 Download gff for BO05953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 306..1592 17..1305 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:06 Download gff for BO05953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 305..1591 17..1305 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:34 Download gff for BO05953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 302..1592 9..1303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:55 Download gff for BO05953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17841-RA 305..1591 17..1305 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:55 Download gff for BO05953.complete
Subject Subject Range Query Range Percent Splice Strand
X 10368356..10368759 17..420 100 -> Plus
X 10381659..10382109 421..871 100 -> Plus
X 10382181..10382510 872..1201 100 -> Plus
X 10382582..10382683 1202..1305 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:06 Download gff for BO05953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10262389..10262792 17..420 100 -> Plus
arm_X 10275692..10276142 421..871 100 -> Plus
arm_X 10276214..10276543 872..1201 100 -> Plus
arm_X 10276615..10276716 1202..1305 98   Plus

BO05953.pep Sequence

Translation from 16 to 1321

> BO05953.pep
MQQRRQPANGNGRGGGTTAAVRTEEQQQQQQPLSQDAGAKEAGSTPGKAT
GRGCYFSLAFSIGSMGLACGSLWQIPNSSDRISLQRGLVLTSLGFIYFVS
LTDFCNKYLLETTHGQRFRRKYRLMMSDVLEITNKIVSAIQASFSFFVGL
IVCKSTCTKSFVYASHFLMEAYGWFGTAYFMYDIWSMYKVHTQKIADKLH
LLRITKGQGAVVSNGHANGKVNGKSASGNNNGSTPTNLHEICDYDGACVQ
IPKDGRWDFLKYVVTHPVMMIHHVFIGTFGLLVVTYIRGGGHCIYSYMFM
MEFSTPFVSLRSILSTMRLKDSRVYIANGLLMLATFFVCRVCMWPYVMWR
YSLAIEAASLWSAMWGLPRGCLISIAILFLPQLYWFYLMVLGALKVFLPQ
KRRPPNAVLSAKSAAVPTPTPTALINGKNASFLDH

BO05953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17841-PA 429 CG17841-PA 1..429 1..429 2274 100 Plus