Clone Sequence Records
BO05953.3prime Sequence
934 bp (762 high quality bases) assembled on 2005-12-02
> BO05953.3prime
ATGGTCTAGAAAGCTTGCATTTTTGCCATTTATAAGGGCGGTGGGGGTTG
GTGTGGGCACGGCCGCCGACTTTGCCGATAGAACTGCGTTGGGCGGCCGT
CTCTTTTGCGGTAGAAAGACCTTGAGAGCACCCAAAACCATCAGATAGAA
CCAGTAGAGCTGTGGCAAGAACAGTATAGCGATGCTGATGAGGCATCCTC
GCGGCAGGCCCCACATGGCCGACCACAGGGATGCAGCCTCAATGGCCAGG
CTGTAGCGCCACATCACGTATGGCCACATGCAGACGCGGCACACGAAGAA
GGTGGCCAGCATCAGCAGACCGTTGGCGATGTACACACGTGAATCCTTGA
GGCGCATGGTGCTCAGGATGCTGCGCAACGAGACGAACGGCGTGGAGAAC
TCCATCATGAACATGTAGCTGTAGATGCAGTGACCGCCACCGCGAATGTA
CGTCACCACCAGCAATCCAAATGTTCCGATGAAGACATGGTGTATCATCA
TGACCGGGTGCGTGACCACGTACTTGAGAAAGTCCCATCTGCCGTCCTTG
GGTATCTGGACACAGGCTCCATCGTAGTCGCAGATCTCGTGCAGATTCGT
TGGAGTGCTGCCGTTGTTGTTGCCGCTGGCCGACTTGCCGTTGACCTTGC
CATTGGCGTGGCCATTGCTCACCACCGCCCCTTGACCCTTGGTAATGCGC
AGCAGGTGCAGCTTGTCGGCGATCTTCTGGGTGTGCACCTTGTACATCGA
CCAGATGTCGTACATAAAGTAAGCAGTGCCGAACCAACCGTACGCCTCCA
TCAAGAAGTGGGATGCATATACAAAGGATTTGGTGCACGTCGACTTGCAG
ACGATGAGTCCCACGAAGAAGGAGAATGAGGCCTGNATTGCCGAGACGAT
TTTGGTTGGTATCTCCAGGACGTCNGACATCATC
BO05953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17841-PA | 1290 | CG17841-RA | 372..1287 | 934..19 | 4467 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17841-RA | 2488 | CG17841-RA | 676..1591 | 934..19 | 4513 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10381655..10382109 | 905..451 | 2249 | 99.6 | Minus |
X | 23542271 | X | 10382180..10382512 | 451..119 | 1665 | 100 | Minus |
X | 23542271 | X | 10382580..10382683 | 122..19 | 520 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 22:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2431 | 669..609 | 116 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2838 | 669..599 | 114 | 63.9 | Minus |
BO05953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:34 Download gff for
BO05953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-PA | 372..1290 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:43 Download gff for
BO05953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-PA | 372..1290 | 18..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:10 Download gff for
BO05953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 676..1591 | 19..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:07 Download gff for
BO05953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 676..1591 | 19..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:07 Download gff for
BO05953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10368727..10368759 | 902..934 | 91 | -> | Minus |
X | 10381659..10382109 | 451..901 | 99 | -> | Minus |
X | 10382181..10382510 | 121..450 | 100 | -> | Minus |
X | 10382582..10382683 | 19..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:10 Download gff for
BO05953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10262760..10262792 | 902..934 | 91 | -> | Minus |
arm_X | 10275692..10276142 | 451..901 | 99 | -> | Minus |
arm_X | 10276214..10276543 | 121..450 | 100 | -> | Minus |
arm_X | 10276615..10276716 | 19..120 | 100 | | Minus |
BO05953.5prime Sequence
930 bp (791 high quality bases) assembled on 2005-11-29
> BO05953.5prime
GAAGTTATCAGTCGACATGCAGCAGCGCCGACAGCCGGCGAATGGCAACG
GCAGAGGAGGAGGAACCACCGCCGCCGTCCGTACGGAGGAGCAGCAACAA
CAGCAGCAGCCATTGAGTCAGGATGCTGGCGCCAAGGAGGCGGGCAGCAC
GCCGGGCAAGGCAACGGGACGCGGCTGCTATTTCTCGCTGGCCTTCTCCA
TCGGTTCGATGGGCCTGGCCTGCGGCAGCCTGTGGCAGATACCGAACAGC
AGTGACCGCATCTCGCTGCAGCGCGGCCTGGTGCTCACCTCGCTGGGATT
CATCTATTTTGTCTCGCTAACGGACTTCTGCAACAAATACCTGCTGGAGA
CGACGCATGGACAGCGCTTTCGTCGCAAGTACCGCCTGATGATGTCCGAC
GTCCTGGAGATAACCAACAAAATCGTCTCGGCAATCCAGGCCTCATTCTC
CTTCTTCGTGGGACTCATCGTCTGCAAGTCGACGTGCACCAAATCCTTTG
TATATGCATCCCACTTCTTGATGGAGGCGTACGGTTGGTTCGGCACTGCT
TACTTTATGTACGACATCTGGTCGATGTACAAGGTGCACACCCAGAAGAT
CGCCGACAAGCTGCACCTGCTGCGCATTACCAAGGGTCAAGGGGCGGTGG
TGAGCAATGGCCACGCCAATGGCAAGGTCAACGGCAAGTCGGCCAGCGGC
AACAACAACGGCAGCACTCCAACGAATCTGCACGAGATCTGCGACTACGA
TGGAGCCTGTGTCCAGATACCCAAGGACGGCAGATGGGACTTTCTNCAGT
ACGTGGTCACGCACCCGGTCATGATGATACACCATGTCTTCATCGGAACA
TTTGGATTGCTGGTGGTGACGTACATTCGCGGTGGGCGTCACTGCATCTA
CAGCTACATGTTCATGATGGAGTTTCTCAC
BO05953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17841-PA | 1290 | CG17841-RA | 1..908 | 17..924 | 4446 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17841-RA | 2488 | CG17841-RA | 305..1212 | 17..924 | 4484 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10381659..10382109 | 421..871 | 2229 | 99.6 | Plus |
X | 23542271 | X | 10368356..10368759 | 17..420 | 2020 | 100 | Plus |
X | 23542271 | X | 10382180..10382233 | 871..924 | 240 | 96.3 | Plus |
Blast to na_te.dros performed 2015-02-11 04:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6854 | 19..110 | 153 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6819 | 15..123 | 122 | 61.8 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 94..189 | 29..123 | 117 | 60.8 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9124..9219 | 29..123 | 117 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2431 | 653..713 | 116 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2838 | 653..723 | 114 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2834 | 45..112 | 112 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1066..1091 | 85..110 | 112 | 92.3 | Plus |
BO05953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:35 Download gff for
BO05953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-PA | 1..912 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:02:45 Download gff for
BO05953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-PA | 1..912 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:41 Download gff for
BO05953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 301..1216 | 9..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:02 Download gff for
BO05953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 301..1216 | 9..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:02 Download gff for
BO05953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10368352..10368759 | 9..420 | 99 | -> | Plus |
X | 10381659..10382109 | 421..871 | 99 | -> | Plus |
X | 10382181..10382237 | 872..930 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:41 Download gff for
BO05953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10262385..10262792 | 9..420 | 99 | -> | Plus |
arm_X | 10275692..10276142 | 421..871 | 99 | -> | Plus |
arm_X | 10276214..10276270 | 872..930 | 93 | | Plus |
BO05953.complete Sequence
1321 bp (1321 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630205
> BO05953.complete
GAAGTTATCAGTCGACATGCAGCAGCGCCGACAGCCGGCGAATGGCAACG
GCAGAGGAGGAGGAACCACCGCCGCCGTCCGTACGGAGGAGCAGCAACAA
CAGCAGCAGCCATTGAGTCAGGATGCTGGCGCCAAGGAGGCGGGCAGCAC
GCCGGGCAAGGCAACGGGACGCGGCTGCTATTTCTCGCTGGCCTTCTCCA
TCGGTTCGATGGGCCTGGCCTGCGGCAGCCTGTGGCAGATACCGAACAGC
AGTGACCGCATCTCGCTGCAGCGCGGCCTGGTGCTCACCTCGCTGGGATT
CATCTATTTTGTCTCGCTAACGGACTTCTGCAACAAATACCTGCTGGAGA
CGACGCATGGACAGCGCTTTCGTCGCAAGTACCGCCTGATGATGTCCGAC
GTCCTGGAGATAACCAACAAAATCGTCTCGGCAATCCAGGCCTCATTCTC
CTTCTTCGTGGGACTCATCGTCTGCAAGTCGACGTGCACCAAATCCTTTG
TATATGCATCCCACTTCTTGATGGAGGCGTACGGTTGGTTCGGCACTGCT
TACTTTATGTACGACATCTGGTCGATGTACAAGGTGCACACCCAGAAGAT
CGCCGACAAGCTGCACCTGCTGCGCATTACCAAGGGTCAAGGGGCGGTGG
TGAGCAATGGCCACGCCAATGGCAAGGTCAACGGCAAGTCGGCCAGCGGC
AACAACAACGGCAGCACTCCAACGAATCTGCACGAGATCTGCGACTACGA
TGGAGCCTGTGTCCAGATACCCAAGGACGGCAGATGGGACTTTCTCAAGT
ACGTGGTCACGCACCCGGTCATGATGATACACCATGTCTTCATCGGAACA
TTTGGATTGCTGGTGGTGACGTACATTCGCGGTGGCGGTCACTGCATCTA
CAGCTACATGTTCATGATGGAGTTCTCCACGCCGTTCGTCTCGTTGCGCA
GCATCCTGAGCACCATGCGCCTCAAGGATTCACGTGTGTACATCGCCAAC
GGTCTGCTGATGCTGGCCACCTTCTTCGTGTGCCGCGTCTGCATGTGGCC
ATACGTGATGTGGCGCTACAGCCTGGCCATTGAGGCTGCATCCCTGTGGT
CGGCCATGTGGGGCCTGCCGCGAGGATGCCTCATCAGCATCGCTATACTG
TTCTTGCCACAGCTCTACTGGTTCTATCTGATGGTTTTGGGTGCTCTCAA
GGTCTTTCTACCGCAAAAGAGACGGCCGCCCAACGCAGTTCTATCGGCAA
AGTCGGCGGCCGTGCCCACACCAACCCCCACCGCCCTTATAAATGGCAAA
AATGCAAGCTTTCTAGACCAT
BO05953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17841-RA | 1290 | CG17841-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17841-RA | 2488 | CG17841-RA | 305..1591 | 17..1303 | 6435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10381659..10382109 | 421..871 | 2255 | 100 | Plus |
X | 23542271 | X | 10368356..10368759 | 17..420 | 2020 | 100 | Plus |
X | 23542271 | X | 10382180..10382512 | 871..1203 | 1665 | 100 | Plus |
X | 23542271 | X | 10382580..10382683 | 1200..1303 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6854 | 19..110 | 153 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6819 | 15..123 | 122 | 61.8 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 94..189 | 29..123 | 117 | 60.8 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9124..9219 | 29..123 | 117 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2431 | 653..713 | 116 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2838 | 653..723 | 114 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2834 | 45..112 | 112 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1066..1091 | 85..110 | 112 | 92.3 | Plus |
BO05953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:33 Download gff for
BO05953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 1..1290 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:22 Download gff for
BO05953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 306..1592 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:06 Download gff for
BO05953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 305..1591 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:34 Download gff for
BO05953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 302..1592 | 9..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:55 Download gff for
BO05953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17841-RA | 305..1591 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:55 Download gff for
BO05953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10368356..10368759 | 17..420 | 100 | -> | Plus |
X | 10381659..10382109 | 421..871 | 100 | -> | Plus |
X | 10382181..10382510 | 872..1201 | 100 | -> | Plus |
X | 10382582..10382683 | 1202..1305 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:06 Download gff for
BO05953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10262389..10262792 | 17..420 | 100 | -> | Plus |
arm_X | 10275692..10276142 | 421..871 | 100 | -> | Plus |
arm_X | 10276214..10276543 | 872..1201 | 100 | -> | Plus |
arm_X | 10276615..10276716 | 1202..1305 | 98 | | Plus |
BO05953.pep Sequence
Translation from 16 to 1321
> BO05953.pep
MQQRRQPANGNGRGGGTTAAVRTEEQQQQQQPLSQDAGAKEAGSTPGKAT
GRGCYFSLAFSIGSMGLACGSLWQIPNSSDRISLQRGLVLTSLGFIYFVS
LTDFCNKYLLETTHGQRFRRKYRLMMSDVLEITNKIVSAIQASFSFFVGL
IVCKSTCTKSFVYASHFLMEAYGWFGTAYFMYDIWSMYKVHTQKIADKLH
LLRITKGQGAVVSNGHANGKVNGKSASGNNNGSTPTNLHEICDYDGACVQ
IPKDGRWDFLKYVVTHPVMMIHHVFIGTFGLLVVTYIRGGGHCIYSYMFM
MEFSTPFVSLRSILSTMRLKDSRVYIANGLLMLATFFVCRVCMWPYVMWR
YSLAIEAASLWSAMWGLPRGCLISIAILFLPQLYWFYLMVLGALKVFLPQ
KRRPPNAVLSAKSAAVPTPTPTALINGKNASFLDH
BO05953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17841-PA | 429 | CG17841-PA | 1..429 | 1..429 | 2274 | 100 | Plus |