Clone Sequence Records
BO05961.3prime Sequence
839 bp (723 high quality bases) assembled on 2005-12-02
> BO05961.3prime
ATGGTCTAGAAAGCTTGCGACGGCGAGCAGTTTTTCACCGCCCTCGACGT
CGTACTGCAGGCACAGGCGGTCGAACTCCGCTGACTTCTTGTCTAGATCG
GTGACAAAGTCGCTCTTGGGATAGAACTGCCTCAGCTGTTCTAGATTCCG
GGTGATCGCCTCTGTCGGCTTGCCCGTAAGATGGGCATGAACCATCAGAT
TGATCAGCGTGTCGTAGTCGTTGTGCTTCTTCAGCAGAGATTCACGCAGA
ACGGAATCTGCCTCCTCGTACCGCTCCAGACCCAAATGAACGACCGCTTG
GCCGTTCAGCAGCGCCGGAGTTGGCTTGAACTTTTCACAGAACTCCTGGT
AGATGTGAAAGGCGTCCTGCATCTGTTCCGTTCCCTGGGCGAGGGCCACC
CACGCCTGAGCGAGCTGAGTCAGCGTAGCATCGTCGCTGATCTCCTGCAT
CTTGGCCACCAGCTGCTTGGCCAGGTCCACGCGCTGCAGACGCAGCAGGC
ACTGGACCGACAGAGCCATCGACTCCAGATTGGTGGAGCCGTGCAGGATC
TTCAGTGCGTTCTCGAACTGCCCGTCGTGGCAGTAGACGATGGCGGTTGC
AAGGTGCCAGATGTTGGTCTCATCCTCCTCTCCGGCCACCTTGTCCGTGA
GTTTCTCCAGCAGCTCCTCCGTCCTCGAAGGCTGCTCAAAGGCTTCGTGC
ACCAGACGCAAGGCCTGCAGTGGCGTGGAGTTTCCCTCCTTGATGTCGGA
GGCCACGATGCGCCCGGAATCGATGGGCCAGTAAGATAGGTACATGTAGG
ACAGGAACTCCGGACCCGCGGTACCCTGCTCCGGCAGCA
BO05961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9543-PA | 921 | CG9543-RA | 98..918 | 839..19 | 4005 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 1105 | CG9543-RA | 199..1019 | 839..19 | 4045 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6489288..6490108 | 839..19 | 4045 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:01:23 has no hits.
BO05961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:49 Download gff for
BO05961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 99..921 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:06 Download gff for
BO05961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 99..921 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:51 Download gff for
BO05961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 200..1019 | 19..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:42 Download gff for
BO05961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 200..1019 | 19..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:42 Download gff for
BO05961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6489289..6490108 | 19..838 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:51 Download gff for
BO05961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6489289..6490108 | 19..838 | 99 | | Minus |
BO05961.5prime Sequence
858 bp (720 high quality bases) assembled on 2005-11-29
> BO05961.5prime
GAAGTTATCAGTCGACATGAGCCGACAGCAGAATGAGGAGGACACCAACT
CGGTGCTATTCGATGCCCGCAACGAGTACTACATCGGTAACTTCATGGGC
TCGATCAACTTCGTGCTGCCGGAGCAGGGTACCGCGGGTCCGGAGCTCCT
GTCCTACATGTACCTATCTTACTTGGCCATCGATTCCGGGCGCATCGTGG
CCTCGGACATCAAGGAGGGAAACTCCACGCCACTGCAGGCCTTGCGTCTG
GTGCACGAAGCCTTTGAGCAGCCTTCGAGGACGGAGGAGCTGCTGGAGAA
ACTCACGGACAAGGTGGCCGGAGAGGAGGATGAGACCAACATCTGGCACC
TTGCAACCGCCATCGTCTACTGCCACGACGGGCAGTTCGAGAACGCACTG
AAGATCCTGCACGGCTCCACCAATCTGGAGTCGATGGCTCTGTCGGTCCA
GTGCCTGCTGCGTCTGCAGCGCGTGGACCTGGCCAAGCAGCTGGTGGCCA
AGATGCAGGAGATCAGCGACGATGCTACGCTGACTCAGCTCGCTCAGGCG
TGGGTGGCCCTCGCCCAGGGAACGGAACAGATGCAGGACGCCTTTCACAT
CTACCAGGAGTTCTGTGAAAAGTTCAAGCCAACTCCGGCGCTGCTGAACG
GCCAAGCGGTCGTTCATTTGGGTCTGGAGCGGTACGAGGAGGCAGATTCC
GTTCTGCGTGAATCTCTGCTGAAAAAGCACAACGACTACGACACGCTGAT
CAATCTGATGGTTCATGCCCATCTTACGGGCAAGCCGACAGAGGCGATCA
CCCGGAATCTAGAACAGCTGAGGCAGTTCTATCCCAAGAGCGACTTTGTC
ACCGATCT
BO05961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9543-PA | 921 | CG9543-RA | 1..842 | 17..858 | 4185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 1105 | CG9543-RA | 102..943 | 17..858 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6489191..6490032 | 17..858 | 4195 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:01:35 has no hits.
BO05961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:50 Download gff for
BO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:08 Download gff for
BO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9543-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:54 Download gff for
BO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..943 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:44 Download gff for
BO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..943 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:44 Download gff for
BO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6489191..6490032 | 17..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:54 Download gff for
BO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6489191..6490032 | 17..858 | 99 | | Plus |
BO05961.complete Sequence
952 bp (952 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630206
> BO05961.complete
GAAGTTATCAGTCGACATGAGCCGACAGCAGAATGAGGAGGACACCAACT
CGGTGCTATTCGATGCCCGCAACGAGTACTACATCGGTAACTTCATGGGC
TCGATCAACTTCGTGCTGCCGGAGCAGGGTACCGCGGGTCCGGAGCTCCT
GTCCTACATGTACCTATCTTACTTGGCCATCGATTCCGGGCGCATCGTGG
CCTCGGACATCAAGGAGGGAAACTCCACGCCACTGCAGGCCTTGCGTCTG
GTGCACGAAGCCTTTGAGCAGCCTTCGAGGACGGAGGAGCTGCTGGAGAA
ACTCACGGACAAGGTGGCCGGAGAGGAGGATGAGACCAACATCTGGCACC
TTGCAACCGCCATCGTCTACTGCCACGACGGGCAGTTCGAGAACGCACTG
AAGATCCTGCACGGCTCCACCAATCTGGAGTCGATGGCTCTGTCGGTCCA
GTGCCTGCTGCGTCTGCAGCGCGTGGACCTGGCCAAGCAGCTGGTGGCCA
AGATGCAGGAGATCAGCGACGATGCTACGCTGACTCAGCTCGCTCAGGCG
TGGGTGGCCCTCGCCCAGGGAACGGAACAGATGCAGGACGCCTTTCACAT
CTACCAGGAGTTCTGTGAAAAGTTCAAGCCAACTCCGGCGCTGCTGAACG
GCCAAGCGGTCGTTCATTTGGGTCTGGAGCGGTACGAGGAGGCAGATTCC
GTTCTGCGTGAATCTCTGCTGAAGAAGCACAACGACTACGACACGCTGAT
CAATCTGATGGTTCATGCCCATCTTACGGGCAAGCCGACAGAGGCGATCA
CCCGGAATCTAGAACAGCTGAGGCAGTTCTATCCCAAGAGCGACTTTGTC
ACCGATCTAGACAAGAAGTCAGCGGAGTTCGACCGCCTGTGCCTGCAGTA
CGACGTCGAGGGCGGTGAAAAACTGCTCGCCGTCGCAAGCTTTCTAGACC
AT
BO05961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 921 | CG9543-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-RA | 1105 | CG9543-RA | 102..1019 | 17..934 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6489191..6490108 | 17..934 | 4590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:47:21 has no hits.
BO05961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:36 Download gff for
BO05961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 1..921 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:54:30 Download gff for
BO05961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 100..1017 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:34 Download gff for
BO05961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..1019 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:36 Download gff for
BO05961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 100..1017 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:52 Download gff for
BO05961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| epsilonCOP-RA | 102..1019 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:52 Download gff for
BO05961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6489191..6490108 | 17..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:34 Download gff for
BO05961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6489191..6490108 | 17..936 | 99 | | Plus |
BO05961.pep Sequence
Translation from 16 to 952
> BO05961.pep
MSRQQNEEDTNSVLFDARNEYYIGNFMGSINFVLPEQGTAGPELLSYMYL
SYLAIDSGRIVASDIKEGNSTPLQALRLVHEAFEQPSRTEELLEKLTDKV
AGEEDETNIWHLATAIVYCHDGQFENALKILHGSTNLESMALSVQCLLRL
QRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFHIYQEFC
EKFKPTPALLNGQAVVHLGLERYEEADSVLRESLLKKHNDYDTLINLMVH
AHLTGKPTEAITRNLEQLRQFYPKSDFVTDLDKKSAEFDRLCLQYDVEGG
EKLLAVASFLDH
BO05961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| epsilonCOP-PA | 306 | CG9543-PA | 1..306 | 1..306 | 1567 | 100 | Plus |
