Clone Sequence Records
BO05963.3prime Sequence
871 bp (784 high quality bases) assembled on 2005-12-02
> BO05963.3prime
ATGGTCTAGAAAGCTTGCTTGGCCCAATCCTTTGGAGGGTATACCCAAAA
TGCGGCGCACCACGGACTCAGCTAACCAAAGGAGTAAAGCCAAAAGGGTG
AGTGCATTGATGGTATGAATGGTGGCTGCATAACCGTAGGCCTCCGTCAA
GATACCAAGAATTGGGCCCATGGCGAACGAGAATATTGTGTTGAAGATGA
GCTGCAGACCAGATGCAGCTGGCAAGCGGTTGAGCGGAACGTAACTGGGT
ATTATCAGCGGTGAGAAGATGGTGCGGAATGCCTTGCCAAAGCCGATCAG
CAGGAAGACGCCGATCATGATCTCGTAGGAGTCGGTAAAGGCCACAACCA
CGCGGCCCACGGCGATGCATAGGATGCCGAAGGCAAACAGCACACGGTTA
TCCAGCTTCACCTTCTCCAAGGCGAGCGGAGCGAGAAATCTCACCGATAT
ATCCATGCAGGCCAGCAGCGACATCACCAGCGAGATCTGTGTATCCGTGT
ACCCAAAGCTGTTCAGAATGAATGGTGTCAGCACCGAGAAGTTCATCTCG
CCAAACATCATGATGCTCATGCCAACGGCCAGGTTGACAAATGTAAAGTC
CCGCAGTAGATCCAAATCAAAGAACTTGCTCACCTTCTGGAAGAAGGTCA
TGCGCCTTTTGGCCTCCTCCTCGGCCTCCGTGTTGTCGGCCGAATTATTG
AACAGGTTCACCTGAAGCGATTCGGCTGTCTTTTGCAACAGTGCCTTGTC
CTCTGCACAGGTGCAGCGCAGCAGCTCATCCTGACCAGNCCGAGAATACA
CGCTCGTCTTGCTGGCATAGCGATCGAGATCCTCGCGCTCCCGATTGAAG
TAGTTTGGCTTGTACAAGGCC
BO05963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8062-PA | 1968 | CG8062-RA | 1113..1965 | 871..19 | 4246 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| out-RB | 3414 | CG8062-RB | 1581..2433 | 871..19 | 4254 | 99.9 | Minus |
| out-RA | 2902 | CG8062-RA | 1581..2433 | 871..19 | 4254 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19311692..19312409 | 154..871 | 3579 | 99.9 | Plus |
| X | 23542271 | X | 19311494..19311631 | 19..156 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:58:49 has no hits.
BO05963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:53 Download gff for
BO05963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8062-PA | 1113..1968 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:12 Download gff for
BO05963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8062-PA | 1113..1968 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:47 Download gff for
BO05963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 1540..2392 | 19..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:13 Download gff for
BO05963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 1581..2433 | 19..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:13 Download gff for
BO05963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19311494..19311630 | 19..155 | 100 | <- | Plus |
| X | 19311694..19312409 | 156..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:47 Download gff for
BO05963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19205527..19205663 | 19..155 | 100 | <- | Plus |
| arm_X | 19205727..19206442 | 156..871 | 99 | | Plus |
BO05963.5prime Sequence
826 bp (706 high quality bases) assembled on 2005-12-02
> BO05963.5prime
GAAGTTATCAGTCGACATGGAAAAATCCAGCTTAACGGAGAAGAATCACA
CCCAAGTGTACAATGACACAACGAAGCCAAAGAAGCCCAAGCGTCGCGAC
AAGAGCGATCTGGGTCCGGATTTTGTGGCGCCCGACGGGGGATGGGGCTG
GGTGGTCTGTCTGGCAGCCGGTTTGAATAACTTCTTCCTTTTCCCGGCTC
TGCAGCAGTATGGCCTGATCTACAGGGTGCGGATGCAATCGCTGGGCTTC
GATGCCAAGCAAACCACGACCATTGTGAACGTGGTGATGGCAATCTCCTC
GCTAGTGGGCATTGTCAATGGCGCCATGTTCCGGCGGTTCACATTCCGTC
AGGTGGCCCTGACCGGCACCAGTCTGGCCTTCCTGGGCGTCTTCTTGTCG
GCCTTTTGCACCACCTTCTGGCAGTATATCATCTGTCTGTCGGCGATATT
TGGTATCGGTTTGGGTCTTGCCATGGCCGCCACCTCACTGGCGGTCAATA
CGTACTTCAAGCTGAAGAGGCGTCGTGCCACGGGTTTCTCGTGGACGATC
ACTGGCCTGGGACCCATATTCTTTCCGCAGGTGTCTACCGTCCTGTTGGG
CTACTATGGTGCCCAGGGCACCATTCTGATCTATGCTGGAATCGCCATGA
ATGCCATTCTCTGCGCTTTGACCCTGCAACCCGTACTTTGGCATGTGAAG
AAGCCCGAAAAACCAGTTCACAATACAATCGAGGGAATTGCCGAGACGGA
GAAGCTGCAACCAGAACTTTTGGAGGCCAATGGCAATCTGTTGTCGCCCA
GCAATGATCCGTGGAAGGATTACGAG
BO05963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8062-PA | 1968 | CG8062-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
| CG8051-PA | 1851 | CG8051-RA | 226..258 | 119..151 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| out-RB | 3414 | CG8062-RB | 469..1278 | 17..826 | 4050 | 100 | Plus |
| out-RA | 2902 | CG8062-RA | 469..1278 | 17..826 | 4050 | 100 | Plus |
| CG8051-RB | 2278 | CG8051-RB | 381..439 | 98..156 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19312712..19313230 | 826..308 | 2595 | 100 | Minus |
| X | 23542271 | X | 19313525..19313689 | 181..17 | 825 | 100 | Minus |
| X | 23542271 | X | 19313311..19313438 | 309..182 | 640 | 100 | Minus |
| X | 23542271 | X | 19303662..19303720 | 156..98 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:24:36 has no hits.
BO05963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:54 Download gff for
BO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8062-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:13 Download gff for
BO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8062-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:32 Download gff for
BO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 420..1237 | 8..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:37:48 Download gff for
BO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 461..1278 | 8..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:37:48 Download gff for
BO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19312712..19313229 | 309..826 | 100 | <- | Minus |
| X | 19313312..19313438 | 182..308 | 100 | <- | Minus |
| X | 19313525..19313697 | 8..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:32 Download gff for
BO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19207558..19207730 | 8..181 | 97 | | Minus |
| arm_X | 19206745..19207262 | 309..826 | 100 | <- | Minus |
| arm_X | 19207345..19207471 | 182..308 | 100 | <- | Minus |
BO05963.complete Sequence
1999 bp assembled on 2007-10-05
GenBank Submission: FJ630207
> BO05963.complete
GAAGTTATCAGTCGACATGGAAAAATCCAGCTTAACGGAGAAGAATCACA
CCCAAGTGTACAATGACACAACGAAGCCAAAGAAGCCCAAGCGTCGCGAC
AAGAGCGATCTGGGTCCGGATTTTGTGGCGCCCGACGGGGGATGGGGCTG
GGTGGTCTGTCTGGCAGCCGGTTTGAATAACTTCTTCCTTTTCCCGGCTC
TGCAGCAGTATGGCCTGATCTACAGGGTGCGGATGCAATCGCTGGGCTTC
GATGCCAAGCAAACCACGACCATTGTGAACGTGGTGATGGCAATCTCCTC
GCTAGTGGGCATTGTCAATGGCGCCATGTTCCGGCGGTTCACATTCCGTC
AGGTGGCCCTGACCGGCACCAGTCTGGCCTTCCTGGGCGTCTTCTTGTCG
GCCTTTTGCACCACCTTCTGGCAGTATATCATCTGTCTGTCGGCGATATT
TGGTATCGGTTTGGGTCTTGCCATGGCCGCCACCTCACTGGCGGTCAATA
CGTACTTCAAGCTGAAGAGGCGTCGTGCCACGGGTTTCTCGTGGACGATC
ACTGGCCTGGGACCCATATTCTTTCCGCAGGTGTCTACCGTCCTGTTGGG
CTACTATGGTGCCCAGGGCACCATTCTGATCTATGCTGGAATCGCCATGA
ATGCCATTCTCTGCGCTTTGACCCTGCAACCCGTACTTTGGCATGTGAAG
AAGCCCGAAAAACCAGTTCACAATACAATCGAGGGAATTGCCGAGACGGA
GAAGCTGCAACCAGAACTTTTGGAGGCCAATGGCAATCTGTTGTCGCCCA
GCAATGATCCGTGGAAGGATTACGAGTGCAAGTACTGTCAGTATCAGAAA
CGTTCTAAGCGAGGCCTTTTCTCGTCCCAATACCTCTTCAATGTCGATGA
TCCCGAGAGGCCGGGGTACGAGATCACCGAGCCAGGAACTCCCATGTTGG
CTCGCGCCAATGACGGTTGGTTCGGGTCGAAGCTCTCCCTGACCTCGGAG
AGCGCGGGAGGAGCTCGCTCTCGCACTCGTCAAGCTCTGATGCGTCAGGT
TTCATCCAGAAGTCGTGAGAATCTCGATAGACTGGAACAGAATCGTCATG
ACCAGGGTCCAGACACTCCATCCGCTGCGGCCTTGTACAAGCCAAACTAC
TTCAATCGGGAGCGCGAGGATCTCGATCGCTATGCCAGCAAGACGAGCGT
GTATTCTCGGCCTGGTCAGGATGAGCTGCTGCGCTGCACCTGTGCAGAGG
ACAAGGCACTGTTGCAAAAGACAGCCGAATCGCTTCAGGTGAACCTGTTC
AATAATTCGGCCGACAACACGGAGGCCGAGGAGGAGGCCAAAAGGCGCAT
GACCTTCTTCCAGAAGGTGAGCAAGTTCTTTGATTTGGATCTACTGCGGG
ACTTTACATTTGTCAACCTGGCCGTTGGCATGAGCATCATGATGTTTGGC
GAGATGAACTTCTCGGTGCTGACACCATTCATTCTGAACAGCTTTGGGTA
CACGGATACACAGATCTCGCTGGTGATGTCGCTGCTGGCCTGCATGGATA
TATCGGTGAGATTTCTCGCTCCGCTCGCCTTGGAGAAGGTGAAGCTGGAT
AACCGTGTGCTGTTTGCCTTCGGCATCCTATGCATCGCCGTGGGCCGCGT
GGTTGTGGCCTTTACCGACTCCTACGAGATCATGATCGGCGTCTTCCTGC
TGATCGGCTTTGGCAAGGCATTCCGCACCATCTTCTCACCGCTGATAATA
CCCAGTTACGTTCCGCTCAACCGCTTGCCAGCTGCATCTGGTCTGCAGCT
CATCTTCAACACAATATTCTCGTTCGCCATGGGCCCAATTCTTGGTATCT
TGACGGAGGCCTACGGTTATGCAGCCACCATTCATACCATCAATGCACTC
ACCCTTTTGGCTTTACTCCTTTGGTTAGCTGAGTCCGTGGTGCGCCGCAT
TTTGGGTATACCCTCCAAAGGATTGGGCCAAGCAAGCTTTCTAGACCAT
BO05963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| out-RB | 1968 | CG8062-PB | 1..1965 | 17..1981 | 9825 | 100 | Plus |
| out-RA | 1968 | CG8062-PA | 1..1965 | 17..1981 | 9825 | 100 | Plus |
| CG8051-RB | 1851 | CG8051-PB | 205..263 | 98..156 | 220 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| out-RB | 3414 | CG8062-RB | 469..2433 | 17..1981 | 9825 | 100 | Plus |
| out-RA | 2902 | CG8062-RA | 469..2433 | 17..1981 | 9825 | 100 | Plus |
| CG8051-RB | 2278 | CG8051-RB | 381..439 | 98..156 | 220 | 91.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19311692..19313230 | 1846..308 | 7695 | 100 | Minus |
| X | 23542271 | X | 19313525..19313689 | 181..17 | 825 | 100 | Minus |
| X | 23542271 | X | 19311494..19311631 | 1981..1844 | 690 | 100 | Minus |
| X | 23542271 | X | 19313311..19313438 | 309..182 | 640 | 100 | Minus |
| X | 23542271 | X | 19303662..19303720 | 156..98 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:40 has no hits.
BO05963.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:14 Download gff for
BO05963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8062-RA | 1..1968 | 17..1982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:29 Download gff for
BO05963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 420..2392 | 8..1981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:53 Download gff for
BO05963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 428..2392 | 17..1983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:15 Download gff for
BO05963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8062-RA | 420..2392 | 8..1981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:25 Download gff for
BO05963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| out-RA | 469..2433 | 17..1983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:25 Download gff for
BO05963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19313312..19313438 | 182..308 | 100 | <- | Minus |
| X | 19313525..19313689 | 17..181 | 100 | | Minus |
| X | 19311694..19313229 | 309..1844 | 100 | <- | Minus |
| X | 19311492..19311630 | 1845..1983 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:53 Download gff for
BO05963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19205525..19205663 | 1845..1983 | 98 | <- | Minus |
| arm_X | 19205727..19207262 | 309..1844 | 100 | <- | Minus |
| arm_X | 19207345..19207471 | 182..308 | 100 | <- | Minus |
| arm_X | 19207558..19207722 | 17..181 | 100 | | Minus |
BO05963.pep Sequence
Translation from 16 to 1999
> BO05963.pep
MEKSSLTEKNHTQVYNDTTKPKKPKRRDKSDLGPDFVAPDGGWGWVVCLA
AGLNNFFLFPALQQYGLIYRVRMQSLGFDAKQTTTIVNVVMAISSLVGIV
NGAMFRRFTFRQVALTGTSLAFLGVFLSAFCTTFWQYIICLSAIFGIGLG
LAMAATSLAVNTYFKLKRRRATGFSWTITGLGPIFFPQVSTVLLGYYGAQ
GTILIYAGIAMNAILCALTLQPVLWHVKKPEKPVHNTIEGIAETEKLQPE
LLEANGNLLSPSNDPWKDYECKYCQYQKRSKRGLFSSQYLFNVDDPERPG
YEITEPGTPMLARANDGWFGSKLSLTSESAGGARSRTRQALMRQVSSRSR
ENLDRLEQNRHDQGPDTPSAAALYKPNYFNREREDLDRYASKTSVYSRPG
QDELLRCTCAEDKALLQKTAESLQVNLFNNSADNTEAEEEAKRRMTFFQK
VSKFFDLDLLRDFTFVNLAVGMSIMMFGEMNFSVLTPFILNSFGYTDTQI
SLVMSLLACMDISVRFLAPLALEKVKLDNRVLFAFGILCIAVGRVVVAFT
DSYEIMIGVFLLIGFGKAFRTIFSPLIIPSYVPLNRLPAASGLQLIFNTI
FSFAMGPILGILTEAYGYAATIHTINALTLLALLLWLAESVVRRILGIPS
KGLGQASFLDH
BO05963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| out-PB | 655 | CG8062-PB | 1..655 | 1..655 | 3370 | 100 | Plus |
| out-PA | 655 | CG8062-PA | 1..655 | 1..655 | 3370 | 100 | Plus |
| CG14196-PA | 600 | CG14196-PA | 4..590 | 13..644 | 1389 | 45.8 | Plus |
| CG8051-PB | 616 | CG8051-PB | 41..603 | 3..643 | 1128 | 38.5 | Plus |
| CG8051-PA | 616 | CG8051-PA | 41..603 | 3..643 | 1128 | 38.5 | Plus |
