Clone Sequence Records
BO05964.3prime Sequence
933 bp (770 high quality bases) assembled on 2005-12-02
> BO05964.3prime
ATGGTCTAGAAAGCTTGCGTTCTCGATGGCCTTAAGTTGTTTGGCAATGA
TTTGCTTCTTGGTTTCCTTTGGCTGGTATTTTGTTTTGTCTGCCTTGGTC
TTGGAATTTTTCGTTTCGGAGGATTTCTTTGATGATTGCACGATTTCATT
CGCTTTGATTTGCAACTTTTCCATCAACGTCAGTGGACGAACTGTGGCCG
TTTCCTCCTGTTTCTTGTGGATCAATGCCTTGGTGGCCACACGATTCTTC
TCGGCCATCTTTTGGTTCTTGTTCTTCACCTTTTCCGAGCGCAGGCCGGC
TAAAGCCTCTTTGTATTCAACTGCATGTTGAATCTCAATATCTGGAGAAA
CGTGGATTTCCTCACCCAATCCCTTGTTCGCATCGCTTAGTATTTTTTTG
AATAAAGTCATATCTTGTTCCGTGAGCACGGTGACGGCGGTGCCCTTTCT
TCCCGCTCGAGCCGTTCGGCCCACTCGATGAATGTATGTCGTGATATGGC
GAGGTGTCTCATATGAGAGCACAACATCCACGTCTGCCACATCGATACCA
CGCGCCAGTGCATCTGAGCAGATCAGTCCATTGATTTTCCCAGCAGCAAA
GTCCCTTAGTCGTTCATTTCGAACCTTAGCCGAGAGATTTCCCGACAATT
CAGACACTTTGGTGCTATACTTTTGAAATAGCACTTTCAGCACGAATGTT
AGTCGAGTTGCCTGATCCGAACTGTTGGTGAAGCACAAGAATCGCTTCCA
TTTGTACTTTTCCACCAAGGCAAAAACAGTGAGGGGTTTAAGTCGCAGCT
CCGTCACACAGTACTGCTCGGTTAACTCCGCCGGCGTTGTGTATCTGCCC
ACAATTGTCCTGNATCTGTAAGCGCTTCGGTATCAGCACCTTCCTCCGTT
GCGTCCTTCACACGGGCATGGTAAGTACGGTGG
BO05964.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9680-PA | 2064 | Dbp73D-RA | 1226..2061 | 854..19 | 4180 | 100 | Minus |
| CG9680-PA | 2064 | Dbp73D-RA | 1169..1226 | 910..853 | 246 | 96.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp73D-RA | 2209 | CG9680-RA | 1229..2145 | 933..19 | 4509 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16728560..16729476 | 19..933 | 4459 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-13 11:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 670..726 | 110..54 | 114 | 66.7 | Minus |
BO05964.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:55 Download gff for
BO05964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9680-PA | 1145..2064 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:14 Download gff for
BO05964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9680-PA | 1145..2064 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:51 Download gff for
BO05964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 1229..2148 | 15..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:19 Download gff for
BO05964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 1229..2148 | 15..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:19 Download gff for
BO05964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16728556..16729476 | 15..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:51 Download gff for
BO05964.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16721656..16722576 | 15..933 | 99 | | Plus |
BO05964.5prime Sequence
853 bp (779 high quality bases) assembled on 2005-12-02
> BO05964.5prime
GAAGTTATCAGTCGACATGGAATTATTTACTGTTAACAGATATACCGAGG
ATTTGAAAGAACAAAAAGATGGGGCCCAAGGCACCAACAACGAGGATGAA
ATACTGCAAAAATTGCTTAAGAAGGCTGCAAAACGCAAAAGGAAACATGA
AGCCATAGAAGTTGTAGAAACACCAATCCTGGAAAAAGAAACCTCAGATG
TGAAGGAGTCGGAATCCAAGGAGGAGCAGGTGGAAGAACCAGAAAAGCCC
CTAGAAGTTGTCCAAGAGGAAGATGTTCCGTCTAATGAGTTTCAAGTTCT
TGGAGGCGATGATTCGGCGGCCAAGAAGAAGAAAGTGCAGATGCAGCTGC
CCAATTGGCTGGCACATCCAACCATCATTGAAGGTGGAAGCCTGCAGCCG
GAGGAGGAAGTGCCCGCCTCCGAGGCAATTGACCAGCTCGATTACCTGGA
GAAGTACACATGTCAAGCTCTCAAGCAGATGAAGATTAAGCGGCTTTTTC
CAGTCCAAAAGCAGGTCATCCCATGGATCCTGGAGGCACACGCTAAGCCT
CCTCCCTTTCGTCCCCGAGATATTTGTGTATCTGCTCCTACAGGCAGTGG
AAAAACCTTGGCCTTTGCCATACCAATTGTCCAGTTGCTATCGCAGCGGG
TGGATTGTAAAGTAAGGGCTTTAGTCGTCCTTCCTGTGGCAGAGCTGGCC
CTACAGGTTTATCGGGTCATCAGTGAGTTGTGCAGCAAAACGGAGCTGGA
GGTTTGCCTTCTATCCAAGCAGCACAAACTAGAGGATGAGCAGGAGAAGC
TGGTGGAGCAATACAAAGGCAAATACTACTCCAAGGCAGACATTGTGGTG
ACC
BO05964.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9680-PA | 2064 | Dbp73D-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp73D-RA | 2209 | CG9680-RA | 85..921 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16729844..16730660 | 853..37 | 4085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:00:25 has no hits.
BO05964.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:56 Download gff for
BO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9680-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:16 Download gff for
BO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9680-PA | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:22 Download gff for
BO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 78..921 | 11..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:08:10 Download gff for
BO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 78..921 | 11..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:08:10 Download gff for
BO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16729844..16730657 | 40..853 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:22 Download gff for
BO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16722944..16723757 | 40..853 | 100 | <- | Minus |
BO05964.complete Sequence
2095 bp assembled on 2010-02-24
GenBank Submission: KX794796
> BO05964.complete
GAAGTTATCAGTCGACATGGAATTATTTACTGTTAACAGATATACCGAGG
ATTTGAAAGAACAAAAAGATGGGGCCCAAGGCACCAACAACGAGGATGAA
ATACTGCAAAAATTGCTTAAGAAGGCTGCAAAACGCAAAAGGAAACATGA
AGCCATAGAAGTTGTAGAAACACCAATCCTGGAAAAAGAAACCTCAGATG
TGAAGGAGTCGGAATCCAAGGAGGAGCAGGTGGAAGAACCAGAAAAGCCC
CTAGAAGTTGTCCAAGAGGAAGATGTTCCGTCTAATGAGTTTCAAGTTCT
TGGAGGCGATGATTCGGCGGCCAAGAAGAAGAAAGTGCAGATGCAGCTGC
CCAATTGGCTGGCACATCCAACCATCATTGAAGGTGGAAGCCTGCAGCCG
GAGGAGGAAGTGCCCGCCTCCGAGGCAATTGACCAGCTCGATTACCTGGA
GAAGTACACATGTCAAGCTCTCAAGCAGATGAAGATTAAGCGGCTTTTTC
CAGTCCAAAAGCAGGTCATCCCATGGATCCTGGAGGCACACGCTAAGCCT
CCTCCCTTTCGTCCCCGAGATATTTGTGTATCTGCTCCTACAGGCAGTGG
AAAAACCTTGGCCTTTGCCATACCAATTGTCCAGTTGCTATCGCAGCGGG
TGGATTGTAAAGTAAGGGCTTTAGTCGTCCTTCCTGTGGCAGAGCTGGCC
CTACAGGTTTATCGGGTCATCAGTGAGTTGTGCAGCAAAACGGAGCTGGA
GGTTTGCCTTCTATCCAAGCAGCACAAACTAGAGGATGAGCAGGAGAAGC
TGGTGGAGCAATACAAAGGCAAATACTACTCCAAGGCAGACATTGTGGTG
ACCACACCAGGCCGCTTGGTTGACCATTTGCACGCCACGAAAGGGTTCTG
CCTGAAGAGCCTAAAATTTCTGGTCATTGACGAGGCCGATCGAATAATGG
ATGCAGTTTTCCAAAACTGGCTTTATCATCTGGACAGTCATGTAAAGGAA
ACCACCGACCAGCTGCTGGCCGGCACTCAAGCACCTCTATGCTATGCAGA
ACTTCAAGCCAGCTTTGGCAAGCAACCACATAAGCTCCTGTTCTCGGCGA
CATTGTCTCAAGATCCCGAGAAGCTGCAGGATCTACGACTCTTTCAGCCT
CGTCTGTTCGCCACCGTACTTACCATGCCCGTGTTGAAGGACGCAACGGA
AGAAGGTGCTGATACCGAAGCGCTTACAGATCCAGGACAATTTGTGGGCA
GATACACAACGCCGGCGGAGTTAACCGAGCAGTACTGTGTGACGGAGCTG
CGACTTAAACCCCTCACTGTTTTTGCCTTGGTGGAAAAGTACAAATGGAA
GCGATTCTTGTGCTTCACCAACAGTTCGGATCAGGCAACTCGACTAACAT
TCGTGCTGAAAGTGCTATTTCAAAAGTATAGCACCAAAGTGTCTGAATTG
TCGGGAAATCTCTCGGCTAAGGTTCGAAATGAACGACTAAGGGACTTTGC
TGCTGGGAAAATCAATGGACTGATCTGCTCAGATGCACTGGCGCGTGGTA
TCGATGTGGCAGACGTGGATGTTGTGCTCTCATATGAGACACCTCGCCAT
ATCACGACATACATTCATCGAGTGGGCCGAACGGCTCGAGCGGGAAGAAA
GGGCACCGCCGTCACCGTGCTCACGGAACAAGATATGACTTTATTCAAAA
AAATACTAAGCGATGCGAACAAGGGATTGGGTGAGGAAATCCACGTTTCT
CCAGATATTGAGATTCAACATGCAGTTGAATACAAAGAGGCTTTAGCCGG
CCTGCGCTCGGAAAAGGTGAAGAACAAGAACCAAAAGATGGCCGAGAAGA
ATCGTGTGGCCACCAAGGCATTGATCCACAAGAAACAGGAGGAAACGGCC
ACAGTTCGTCCACTGACGTTGATGGAAAAGTTGCAAATCAAAGCGAATGA
AATCGTGCAATCATCAAAGAAATCCTCCGAAACGAAAAATTCCAAGACCA
AGGCAGACAAAACAAAATACCAGCCAAAGGAAACCAAGAAGCAAATCATT
GCCAAACAACTTAAGGCCATCGAGAACGCAAGCTTTCTAGACCAT
BO05964.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp73D-RA | 2064 | CG9680-PA | 1..2061 | 17..2077 | 10305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:29:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp73D-RA | 2209 | CG9680-RA | 85..2145 | 17..2077 | 10305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16728560..16729779 | 2077..858 | 6100 | 100 | Minus |
| 3L | 28110227 | 3L | 16729836..16730660 | 861..37 | 4125 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 670..726 | 1986..2042 | 114 | 66.7 | Plus |
BO05964.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-24 09:36:49 Download gff for
BO05964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 77..2137 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:22 Download gff for
BO05964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 85..2145 | 17..2079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:13 Download gff for
BO05964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp73D-RA | 85..2145 | 17..2079 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:13 Download gff for
BO05964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16728558..16729776 | 861..2079 | 99 | <- | Minus |
| 3L | 16729837..16730657 | 40..860 | 100 | <- | Minus |
| 3L | 16730712..16730734 | 17..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:22 Download gff for
BO05964.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16721658..16722876 | 861..2079 | 99 | <- | Minus |
| arm_3L | 16722937..16723757 | 40..860 | 100 | <- | Minus |
| arm_3L | 16723812..16723834 | 17..39 | 100 | | Minus |
BO05964.pep Sequence
Translation from 16 to 2095
> BO05964.pep
MELFTVNRYTEDLKEQKDGAQGTNNEDEILQKLLKKAAKRKRKHEAIEVV
ETPILEKETSDVKESESKEEQVEEPEKPLEVVQEEDVPSNEFQVLGGDDS
AAKKKKVQMQLPNWLAHPTIIEGGSLQPEEEVPASEAIDQLDYLEKYTCQ
ALKQMKIKRLFPVQKQVIPWILEAHAKPPPFRPRDICVSAPTGSGKTLAF
AIPIVQLLSQRVDCKVRALVVLPVAELALQVYRVISELCSKTELEVCLLS
KQHKLEDEQEKLVEQYKGKYYSKADIVVTTPGRLVDHLHATKGFCLKSLK
FLVIDEADRIMDAVFQNWLYHLDSHVKETTDQLLAGTQAPLCYAELQASF
GKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADT
EALTDPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCF
TNSSDQATRLTFVLKVLFQKYSTKVSELSGNLSAKVRNERLRDFAAGKIN
GLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARAGRKGTAVT
VLTEQDMTLFKKILSDANKGLGEEIHVSPDIEIQHAVEYKEALAGLRSEK
VKNKNQKMAEKNRVATKALIHKKQEETATVRPLTLMEKLQIKANEIVQSS
KKSSETKNSKTKADKTKYQPKETKKQIIAKQLKAIENASFLDH
BO05964.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp73D-PA | 687 | CG9680-PA | 1..687 | 1..687 | 3482 | 100 | Plus |
| Dbp45A-PA | 521 | CG12759-PA | 14..482 | 144..671 | 359 | 26.2 | Plus |
| pit-PC | 680 | CG6375-PC | 59..558 | 25..573 | 346 | 25.3 | Plus |
| pit-PA | 680 | CG6375-PA | 59..558 | 25..573 | 346 | 25.3 | Plus |
| pit-PB | 680 | CG6375-PB | 59..558 | 25..573 | 346 | 25.3 | Plus |
