Clone Sequence Records
BO05965.3prime Sequence
572 bp (571 high quality bases) assembled on 2005-12-02
> BO05965.3prime
ATGGTCTAGAAAGCTTGCGGGCTTGCTGTCGAAGCCAGCGAAATCCGACG
CCTCCGACTCATCGTCATCCCTCTCGACGCCGATGCAATGGATTCCAGTC
CGCAGCATAGGAGTACCCTTGCCCTTGCCCAACACCCGAGCGGCTATGAC
CAGCTGTAGCAGCTCCTTGGCGTTCGATGAGCTGACAATGTGCAGGACCT
CGCGCAACAGCTTCTCCTTGTAGGCAAAGAACTCGATTTTCATTTCGAAA
AAGTCGTGCTCATCATGCTTGGTGCCCTCGAACTCCGTGATCCTGCAGTG
CAAGCTCGGCGTGGCGCTAATCACCGGCTCAAATTTGCTGGCCAGCGTCT
TGGCATCGCCGAATAGCGACGTCGGCAGCTTCAGTTCGATCAGATAGCGA
TGCCTGATCTGCAGAAAGCCCAGGCTCACCACAATCGTGTCACCAGACCT
TTGGTATGTCACACAGCTGTCCGATTCGAAGTCATCCTTCACCGTGTTCG
TGTCGAAGTGCACATGGTGGTCTTGATGCTCCACATTTTCAATGGACTCG
TCGCACATGTCGACTGATAACT
BO05965.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-PA | 543 | CG6983-RA | 1..540 | 558..19 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-RB | 1740 | CG6983-RB | 193..732 | 558..19 | 2700 | 100 | Minus |
| CG6983-RA | 1302 | CG6983-RA | 193..732 | 558..19 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8444050..8444557 | 19..526 | 2540 | 100 | Plus |
| 3L | 28110227 | 3L | 8449149..8449185 | 522..558 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:27:39 has no hits.
BO05965.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:57 Download gff for
BO05965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:17 Download gff for
BO05965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-PA | 1..543 | 15..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:31 Download gff for
BO05965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 184..736 | 14..568 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:36 Download gff for
BO05965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 184..736 | 14..568 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:36 Download gff for
BO05965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8444046..8444552 | 14..521 | 99 | <- | Plus |
| 3L | 8449149..8449194 | 522..568 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:31 Download gff for
BO05965.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8437146..8437652 | 14..521 | 99 | <- | Plus |
| arm_3L | 8442249..8442294 | 522..568 | 91 | | Plus |
BO05965.5prime Sequence
572 bp (571 high quality bases) assembled on 2005-11-29
> BO05965.5prime
GAAGTTATCAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATC
AAGACCACCATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAA
TCGGACAGCTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAG
CCTGGGCTTTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGC
CGACGTCGCTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCG
GTGATTAGCGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGG
CACCAAGCATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTG
CCTACAAGGAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCG
AACGCCAAGGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAA
GGGCAAGGGTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCG
AGAGGGATGACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGC
AAGCCCGCAAGCTTTCTAGACC
BO05965.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-PA | 543 | CG6983-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-RB | 1740 | CG6983-RB | 193..732 | 17..556 | 2700 | 100 | Plus |
| CG6983-RA | 1302 | CG6983-RA | 193..732 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8444050..8444557 | 556..49 | 2540 | 100 | Minus |
| 3L | 28110227 | 3L | 8449149..8449185 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:47:44 has no hits.
BO05965.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:35:58 Download gff for
BO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-PA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:19 Download gff for
BO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-PA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:05:50 Download gff for
BO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 184..736 | 7..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:34:53 Download gff for
BO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 184..736 | 7..561 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:34:53 Download gff for
BO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8444046..8444552 | 54..561 | 99 | <- | Minus |
| 3L | 8449149..8449194 | 7..53 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:05:50 Download gff for
BO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8437146..8437652 | 54..561 | 99 | <- | Minus |
| arm_3L | 8442249..8442294 | 7..53 | 91 | | Minus |
BO05965.complete Sequence
574 bp (574 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630208
> BO05965.complete
GAAGTTATCAGTCGACATGTGCGACGAGTCCATTGAAAATGTGGAGCATC
AAGACCACCATGTGCACTTCGACACGAACACGGTGAAGGATGACTTCGAA
TCGGACAGCTGTGTGACATACCAAAGGTCTGGTGACACGATTGTGGTGAG
CCTGGGCTTTCTGCAGATCAGGCATCGCTATCTGATCGAACTGAAGCTGC
CGACGTCGCTATTCGGCGATGCCAAGACGCTGGCCAGCAAATTTGAGCCG
GTGATTAGCGCCACGCCGAGCTTGCACTGCAGGATCACGGAGTTCGAGGG
CACCAAGCATGATGAGCACGACTTTTTCGAAATGAAAATCGAGTTCTTTG
CCTACAAGGAGAAGCTGTTGCGCGAGGTCCTGCACATTGTCAGCTCATCG
AACGCCAAGGAGCTGCTACAGCTGGTCATAGCCGCTCGGGTGTTGGGCAA
GGGCAAGGGTACTCCTATGCTGCGGACTGGAATCCATTGCATCGGCGTCG
AGAGGGATGACGATGAGTCGGAGGCGTCGGATTTCGCTGGCTTCGACAGC
AAGCCCGCAAGCTTTCTAGACCAT
BO05965.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-RB | 543 | CG6983-PB | 1..540 | 17..556 | 2700 | 100 | Plus |
| CG6983-RA | 543 | CG6983-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-RB | 1740 | CG6983-RB | 193..732 | 17..556 | 2700 | 100 | Plus |
| CG6983-RA | 1302 | CG6983-RA | 193..732 | 17..556 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8444050..8444557 | 556..49 | 2540 | 100 | Minus |
| 3L | 28110227 | 3L | 8449149..8449185 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:05:16 has no hits.
BO05965.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:43 Download gff for
BO05965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 1..543 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:39:40 Download gff for
BO05965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 179..731 | 7..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:07 Download gff for
BO05965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 193..732 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:43 Download gff for
BO05965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 179..731 | 7..561 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:22 Download gff for
BO05965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6983-RA | 193..732 | 17..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:22 Download gff for
BO05965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8444048..8444552 | 54..558 | 99 | <- | Minus |
| 3L | 8449149..8449185 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:07 Download gff for
BO05965.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8442249..8442285 | 17..53 | 100 | | Minus |
| arm_3L | 8437148..8437652 | 54..558 | 99 | <- | Minus |
BO05965.pep Sequence
Translation from 16 to 574
> BO05965.pep
MCDESIENVEHQDHHVHFDTNTVKDDFESDSCVTYQRSGDTIVVSLGFLQ
IRHRYLIELKLPTSLFGDAKTLASKFEPVISATPSLHCRITEFEGTKHDE
HDFFEMKIEFFAYKEKLLREVLHIVSSSNAKELLQLVIAARVLGKGKGTP
MLRTGIHCIGVERDDDESEASDFAGFDSKPASFLDH
BO05965.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6983-PB | 180 | CG6983-PB | 1..180 | 1..180 | 939 | 100 | Plus |
| CG6983-PA | 180 | CG6983-PA | 1..180 | 1..180 | 939 | 100 | Plus |
