Clone Sequence Records
BO05967.3prime Sequence
734 bp (733 high quality bases) assembled on 2005-12-02
> BO05967.3prime
ATGGTCTAGAAAGCTTGCGGGGATGCTGGCCAAGTAGTCCTTGATTGAGG
CGGGGTCCAGACGCTGGAATCCGTTCTGATCGCAGATTCCGATCTCAATG
TTGTCGGCAGTCATTTTTCCCTCAAAACCTTCTTTCAGCGTAAGGATGGC
GGTGTGAACAGCGTCGTCCAGCTCCAGATCTTCGCTGTAGCGCTTCTCCA
GGAAAGTTTTGCCGTTCACTGCGTTCTTGCCCATGGCAGTGGCCTTCCAG
GCGAAGTAGGCGCCCGAAGGATCGGATTGGTAGAGATACGGACGATCATT
GTCCCAGCCGCAGATCAGTAGGGAAACGCCAAAGGGACGAACGCCACCGG
ACTGAGTGTACTCCTGCATGAGCGTGGCCACGCGCTGCACCAGCTGTGAC
ACTGGAATCGGCTCCTTGTAGGTCAGGTAGTACGTCTGGGCGATCTTGCG
GGCCTGCTTGACCAGCAGGCGGTAGTCCGGACCCATTCCCGAGTACACCA
TGCCGATGTGGTTGTAGATCATCTCCACGCGATGTACACTGTGCTGCTCA
TACAGCGGTGACTTGTGTTTGTTCTCTGTGGCAATGACGACGCCGTTGGA
AGCTATAATGCCCACGGAGGGAGCTCCGCCAGATACGGCCGCCAATGCAT
ACTCCAGTTGGACGAGTTTTCCGGAAGGACTGAACGTGGTCAACGAAAAG
CTGTATCGTTCGGTAGCCATGTCGACTGATAACT
BO05967.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5266-PA | 705 | Pros25-RA | 1..702 | 720..19 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..822 | 720..19 | 3510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 605..347 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 12432286..12432458 | 191..19 | 865 | 100 | Minus |
3R | 32079331 | 3R | 12432066..12432222 | 347..191 | 785 | 100 | Minus |
3R | 32079331 | 3R | 12431581..12431660 | 682..603 | 400 | 100 | Minus |
3R | 32079331 | 3R | 12431441..12431481 | 720..680 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:33:50 has no hits.
BO05967.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:01 Download gff for
BO05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:22 Download gff for
BO05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:23 Download gff for
BO05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 11..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:32 Download gff for
BO05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 11..728 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:32 Download gff for
BO05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431746..12432001 | 347..602 | 100 | -> | Minus |
3R | 12432067..12432222 | 191..346 | 100 | -> | Minus |
3R | 12432287..12432465 | 11..190 | 98 | | Minus |
3R | 12431433..12431481 | 680..728 | 91 | -> | Minus |
3R | 12431584..12431660 | 603..679 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:23 Download gff for
BO05967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257155..8257203 | 680..728 | 91 | -> | Minus |
arm_3R | 8257306..8257382 | 603..679 | 100 | -> | Minus |
arm_3R | 8257468..8257723 | 347..602 | 100 | -> | Minus |
arm_3R | 8257789..8257944 | 191..346 | 100 | -> | Minus |
arm_3R | 8258009..8258187 | 11..190 | 98 | | Minus |
BO05967.5prime Sequence
734 bp (733 high quality bases) assembled on 2005-12-02
> BO05967.5prime
GAAGTTATCAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCA
CGTTCAGTCCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCC
GTATCTGGCGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGT
CATTGCCACAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTG
TACATCGCGTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGA
ATGGGTCCGGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCA
GACGTACTACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGC
AGCGCGTGGCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGT
CCCTTTGGCGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTA
TCTCTACCAATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTG
CCATGGGCAAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTAC
AGCGAAGATCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCT
GAAAGAAGGTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAA
TCTGCGATCAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGAC
TACTTGGCCAGCATCCCCGCAAGCTTTCTAGACC
BO05967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5266-PA | 705 | Pros25-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..822 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 132..390 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 12432286..12432458 | 546..718 | 865 | 100 | Plus |
3R | 32079331 | 3R | 12432066..12432222 | 390..546 | 785 | 100 | Plus |
3R | 32079331 | 3R | 12431581..12431660 | 55..134 | 400 | 100 | Plus |
3R | 32079331 | 3R | 12431441..12431481 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 11:59:17 has no hits.
BO05967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:02 Download gff for
BO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:24 Download gff for
BO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5266-PA | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:39 Download gff for
BO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 9..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:32 Download gff for
BO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 113..829 | 9..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:32 Download gff for
BO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431433..12431481 | 9..57 | 91 | -> | Plus |
3R | 12431584..12431660 | 58..134 | 100 | -> | Plus |
3R | 12431746..12432001 | 135..390 | 100 | -> | Plus |
3R | 12432067..12432222 | 391..546 | 100 | -> | Plus |
3R | 12432287..12432465 | 547..726 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:39 Download gff for
BO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257789..8257944 | 391..546 | 100 | -> | Plus |
arm_3R | 8257155..8257203 | 9..57 | 91 | -> | Plus |
arm_3R | 8257306..8257382 | 58..134 | 100 | -> | Plus |
arm_3R | 8258009..8258187 | 547..726 | 98 | | Plus |
arm_3R | 8257468..8257723 | 135..390 | 100 | -> | Plus |
BO05967.complete Sequence
736 bp (736 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630209
> BO05967.complete
GAAGTTATCAGTCGACATGGCTACCGAACGATACAGCTTTTCGTTGACCA
CGTTCAGTCCTTCCGGAAAACTCGTCCAACTGGAGTATGCATTGGCGGCC
GTATCTGGCGGAGCTCCCTCCGTGGGCATTATAGCTTCCAACGGCGTCGT
CATTGCCACAGAGAACAAACACAAGTCACCGCTGTATGAGCAGCACAGTG
TACATCGCGTGGAGATGATCTACAACCACATCGGCATGGTGTACTCGGGA
ATGGGTCCGGACTACCGCCTGCTGGTCAAGCAGGCCCGCAAGATCGCCCA
GACGTACTACCTGACCTACAAGGAGCCGATTCCAGTGTCACAGCTGGTGC
AGCGCGTGGCCACGCTCATGCAGGAGTACACTCAGTCCGGTGGCGTTCGT
CCCTTTGGCGTTTCCCTACTGATCTGCGGCTGGGACAATGATCGTCCGTA
TCTCTACCAATCCGATCCTTCGGGCGCCTACTTCGCCTGGAAGGCCACTG
CCATGGGCAAGAACGCAGTGAACGGCAAAACTTTCCTGGAGAAGCGCTAC
AGCGAAGATCTGGAGCTGGACGACGCTGTTCACACCGCCATCCTTACGCT
GAAAGAAGGTTTTGAGGGAAAAATGACTGCCGACAACATTGAGATCGGAA
TCTGCGATCAGAACGGATTCCAGCGTCTGGACCCCGCCTCAATCAAGGAC
TACTTGGCCAGCATCCCCGCAAGCTTTCTAGACCAT
BO05967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 705 | CG5266-PA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-RA | 920 | CG5266-RA | 121..822 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12431743..12432001 | 132..390 | 1295 | 100 | Plus |
3R | 32079331 | 3R | 12432286..12432458 | 546..718 | 865 | 100 | Plus |
3R | 32079331 | 3R | 12432066..12432222 | 390..546 | 785 | 100 | Plus |
3R | 32079331 | 3R | 12431581..12431660 | 55..134 | 400 | 100 | Plus |
3R | 32079331 | 3R | 12431441..12431481 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:28:12 has no hits.
BO05967.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:38 Download gff for
BO05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros25-RA | 1..705 | 17..722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:54:35 Download gff for
BO05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros25-RA | 109..825 | 9..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:03 Download gff for
BO05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 121..822 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:39 Download gff for
BO05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros25-RA | 109..825 | 9..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:29 Download gff for
BO05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha2-RA | 121..822 | 17..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:29 Download gff for
BO05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12431441..12431481 | 17..57 | 100 | -> | Plus |
3R | 12431584..12431660 | 58..134 | 100 | -> | Plus |
3R | 12431746..12432001 | 135..390 | 100 | -> | Plus |
3R | 12432067..12432222 | 391..546 | 100 | -> | Plus |
3R | 12432287..12432458 | 547..720 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:03 Download gff for
BO05967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8257163..8257203 | 17..57 | 100 | -> | Plus |
arm_3R | 8257306..8257382 | 58..134 | 100 | -> | Plus |
arm_3R | 8257468..8257723 | 135..390 | 100 | -> | Plus |
arm_3R | 8257789..8257944 | 391..546 | 100 | -> | Plus |
arm_3R | 8258009..8258180 | 547..720 | 98 | | Plus |
BO05967.pep Sequence
Translation from 16 to 736
> BO05967.pep
MATERYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATEN
KHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLT
YKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPYLYQSD
PSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFE
GKMTADNIEIGICDQNGFQRLDPASIKDYLASIPASFLDH
BO05967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha2-PA | 234 | CG5266-PA | 1..234 | 1..234 | 1214 | 100 | Plus |
Prosalpha4-PA | 249 | CG3422-PA | 2..234 | 3..233 | 368 | 36.4 | Plus |
Prosalpha4T2-PB | 252 | CG4569-PB | 3..186 | 4..186 | 358 | 37.5 | Plus |
Prosalpha4T2-PA | 252 | CG4569-PA | 3..186 | 4..186 | 358 | 37.5 | Plus |
Prosalpha5-PB | 244 | CG10938-PB | 3..219 | 1..210 | 342 | 33.2 | Plus |