Clone Sequence Records
BO05975.3prime Sequence
928 bp (879 high quality bases) assembled on 2005-12-02
> BO05975.3prime
ATGGTCTAGAAAGCTTGCGGCATAGTTTTGCAGTAATATCACTTGGGACT
TTTTCAGCGACTCCCGGCACAAGGGGCACTCATCCCGCTCCTCCAGCCAC
TCGAGCAGGCAGCTCCAGCAAAAGATGTGGCCGCATGGAGTCAAACTGCT
GTCAGAACGTGGCTCCAGGCAAAGGATGCACTGTGGGGTGTTTGGATCTA
CGTCCTTTGTACTCGAAGATCTTTGCAGGAAATTCTTTCCAGCCTGCTTT
ATTGATTCTAGCTGCTGGCGCTTGTGCTCTCTCCAGGCATCCCATCCACT
AATGGCCAAGGAAACGCTGACCTGCAGGAAAGTGATTACGCCCAGTATCT
TGTAGCCGTACAGCGAGAATTCCGGCTGCAGCCAGTGACGGATTAGTACG
TAGTTGATGCCCGTGGTGCGCTTGGACAGCTGGTACTTGCTGGCGTCCAA
GTAGAATAGAGACTTGTGCAGGGCCTTTACGTAGCTGGGAGATTGCCTGA
GCCTCTGAATAATCTTCTTTAGCTGCGGCTTGATCTCGGTTCGAATCTCG
TCATTGTTGGCCACGTAGGTGTCAAGTTTTTGCATCAATCGTTGGAACAG
GGAGTCGCCACCAAACTCCAGGACAATGGCAATCAGTTGTAACAATCTGC
TGGGAATCTGCTTATAGTTCCCGTCCACCTGTATTATCCCCGTGTACTCT
TCGCCGAGGGTCTGAAGGTTATTGGCCGAGGCGAATCCGTGGTAACTGAG
CTCCGCCAGAAGTCGGCACATCTGGTTGTACTTTATCCAGTTCCGTGGAC
CGGTGAGGCGCAAGACATCGGACAAGTCTTCGGCCAGCTCGTTGGTGTAC
CGTGCATCCTTCTGCACGGATCTCACGATCTCGGGCTGCCGGGCACGGGG
CGTCCGAAAGTCCATGTCGACTGATAAC
BO05975.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7864-PA | 900 | CG7864-RA | 22..897 | 894..19 | 4355 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-RB | 1028 | CG7864-RB | 47..947 | 919..19 | 4430 | 99.6 | Minus |
| Pex10-RA | 1487 | CG7864-RA | 506..1406 | 919..19 | 4430 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1559158..1559782 | 643..19 | 3125 | 100 | Minus |
| 3L | 28110227 | 3L | 1558828..1559104 | 919..643 | 1310 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:50:27 has no hits.
BO05975.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:18 Download gff for
BO05975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-PA | 1..900 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:44 Download gff for
BO05975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-PA | 1..900 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:48 Download gff for
BO05975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1413 | 11..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:01 Download gff for
BO05975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1413 | 11..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:01 Download gff for
BO05975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1558825..1559104 | 643..923 | 97 | -> | Minus |
| 3L | 1559159..1559789 | 11..642 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:48 Download gff for
BO05975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1558825..1559104 | 643..923 | 97 | -> | Minus |
| arm_3L | 1559159..1559789 | 11..642 | 99 | | Minus |
BO05975.5prime Sequence
921 bp (853 high quality bases) assembled on 2005-11-29
> BO05975.5prime
GAAGTTATCAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGG
AGATCGTGAGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCC
GAAGACTTGTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAA
GTACAACCAGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCG
CCTCGGCCAATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATA
CAGGTGGACGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGAT
TGCCATTGTCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGC
AAAAACTTGACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATC
AAGCCGCAGCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTA
CGTAAAGGCCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACC
AGCTGTCCAAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGG
CTGCAGCCGGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCAC
TTTCCTGCAGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCTGGA
GAGAGCACAAGCGCCAGCAGCTAGAATCAATAAAGCAGGCTGGAAAGAAT
TTCCTGCAAAGATCTTCGAGTACAAAGGACGTAGATCCAAACACCCCACA
GTGCATCCTTTGCCTGGAGCCACGTTCTGACAGCAGTTTGACTCCATGCG
GCCACATCTTTTGCTGGAGCTGCCTGCTCGAGTGGCTGGAGGAGCGGGAT
GAGTGCCCCTTGTGCCGGGAGTCGCTGAAAAAGTCCCAAGTGATATTACT
GCAAAACTATGCCCGCAGCTT
BO05975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7864-PA | 900 | CG7864-RA | 1..897 | 17..913 | 4460 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-RB | 1028 | CG7864-RB | 47..947 | 13..913 | 4490 | 99.9 | Plus |
| Pex10-RA | 1487 | CG7864-RA | 506..1406 | 13..913 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1559158..1559782 | 289..913 | 3125 | 100 | Plus |
| 3L | 28110227 | 3L | 1558828..1559104 | 13..289 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:49:54 has no hits.
BO05975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:19 Download gff for
BO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:03:46 Download gff for
BO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-PA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:50 Download gff for
BO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1413 | 9..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:19:56 Download gff for
BO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 503..1413 | 9..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:19:56 Download gff for
BO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1558825..1559104 | 9..289 | 98 | -> | Plus |
| 3L | 1559159..1559789 | 290..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:50 Download gff for
BO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1558825..1559104 | 9..289 | 98 | -> | Plus |
| arm_3L | 1559159..1559789 | 290..921 | 99 | | Plus |
BO05975.complete Sequence
931 bp (931 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630210
> BO05975.complete
GAAGTTATCAGTCGACATGGACTTTCGGAACGCCCGTGCCCGGCAGCCGG
AGATCGTGAGATCCGTGCAGAAGGATGCACGGTACACCAACGAGCTGGCC
GAAGACTTGTCCGATGTCTTGCGCCTCACCGGTCCACGGAACTGGATAAA
GTACAACCAGATGTGCCGACTTCTGGCGGAGCTCAGTTACCACGGATTCG
CCTCGGCCAATAACCTTCAGACCCTCGGCGAAGAGTACACGGGGATAATA
CAGGTGGACGGGAACTATAAGCAGATTCCCAGCAGATTGTTACAACTGAT
TGCCATTGTCCTGGAGTTTGGTGGCGACTCCCTGTTCCAACGATTGATGC
AAAAACTTGACACCTACGTGGCCAACAATGACGAGATTCGAACCGAGATC
AAGCCGCAGCTAAAGAAGATTATTCAGAGGCTCAGGCAATCTCCCAGCTA
CGTAAAGGCCCTGCACAAGTCTCTATTCTACTTGGACGCCAGCAAGTACC
AGCTGTCCAAGCGCACCACGGGCATCAACTACGTACTAATCCGTCACTGG
CTGCAGCCGGAATTCTCGCTGTACGGCTACAAGATACTGGGCGTAATCAC
TTTCCTGCAGGTCAGCGTTTCCTTGGCCATTAGTGGATGGGATGCCTGGA
GAGAGCACAAGCGCCAGCAGCTAGAATCAATAAAGCAGGCTGGAAAGAAT
TTCCTGCAAAGATCTTCGAGTACAAAGGACGTAGATCCAAACACCCCACA
GTGCATCCTTTGCCTGGAGCCACGTTCTGACAGCAGTTTGACTCCATGCG
GCCACATCTTTTGCTGGAGCTGCCTGCTCGAGTGGCTGGAGGAGCGGGAT
GAGTGCCCCTTGTGCCGGGAGTCGCTGAAAAAGTCCCAAGTGATATTACT
GCAAAACTATGCCGCAAGCTTTCTAGACCAT
BO05975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-RB | 900 | CG7864-PB | 1..897 | 17..913 | 4470 | 99.9 | Plus |
| Pex10-RA | 900 | CG7864-PA | 1..897 | 17..913 | 4470 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:40:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-RB | 1028 | CG7864-RB | 47..947 | 13..913 | 4490 | 99.9 | Plus |
| Pex10-RA | 1487 | CG7864-RA | 506..1406 | 13..913 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1559158..1559782 | 289..913 | 3125 | 100 | Plus |
| 3L | 28110227 | 3L | 1558828..1559104 | 13..289 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:40:42 has no hits.
BO05975.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:28 Download gff for
BO05975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-RA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:54:19 Download gff for
BO05975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-RA | 496..1406 | 9..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:11 Download gff for
BO05975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 510..1406 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:28 Download gff for
BO05975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7864-RA | 496..1406 | 9..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:57 Download gff for
BO05975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex10-RA | 510..1406 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:57 Download gff for
BO05975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1558832..1559104 | 17..289 | 99 | -> | Plus |
| 3L | 1559159..1559782 | 290..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:11 Download gff for
BO05975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1558832..1559104 | 17..289 | 99 | -> | Plus |
| arm_3L | 1559159..1559782 | 290..915 | 99 | | Plus |
BO05975.pep Sequence
Translation from 16 to 931
> BO05975.pep
MDFRNARARQPEIVRSVQKDARYTNELAEDLSDVLRLTGPRNWIKYNQMC
RLLAELSYHGFASANNLQTLGEEYTGIIQVDGNYKQIPSRLLQLIAIVLE
FGGDSLFQRLMQKLDTYVANNDEIRTEIKPQLKKIIQRLRQSPSYVKALH
KSLFYLDASKYQLSKRTTGINYVLIRHWLQPEFSLYGYKILGVITFLQVS
VSLAISGWDAWREHKRQQLESIKQAGKNFLQRSSSTKDVDPNTPQCILCL
EPRSDSSLTPCGHIFCWSCLLEWLEERDECPLCRESLKKSQVILLQNYAA
SFLDH
BO05975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex10-PB | 299 | CG7864-PB | 1..299 | 1..299 | 1562 | 100 | Plus |
| Pex10-PA | 299 | CG7864-PA | 1..299 | 1..299 | 1562 | 100 | Plus |
