Clone Sequence Records
BO05982.3prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-02
> BO05982.3prime
ATGGTCTAGAAAGCTTGCAGCTTCGGCCTCAACCTCCTCCTTCACCTTGG
CATCTCCGGGCTTGCCCTTGGACCAGTCGGGTTTCTTCTCCTTCTCCTCC
TCCTCCAGCGTGAACTCCTTCTTCTTCACCACCTTGAGCTGGTTGCGGAA
GTTGAACTCAGCGGCCTTCTTCTGCAGCTTGGCGAATTTGTTTTCGTATT
TGGAGACCTTCTTCAGGGCTGGCTTGACGAACTTGCCGCGAAGATCGTTA
ACTTGGGCATTGAGATCGTTGATCTCTTGGGCCTTGACTTTCTGCACGTG
TTCTAAATCAAACTTATCGCCCTCCAAACTGTATACGCGTTGCCAATATT
GTTTGCATATTGTTTGCAGTTCGGCTTCGCTGGCATCGCTGAGATTCCTG
GGACTGCCGCAACGTTCTTCGATGATGCGTCTACGTTCAGCCGCTTTGCG
TTCCTGTTCTTTCTTCAGCTCCTCAGCGGCTTTCTTACGCAGCAGCAACC
TGAGTTTCTTCTTCCTCTCTGGGGTCATGAAACCCTTCTTGGCCTTCTTG
GCCTTGGAGGCTTCCTCCATGCGCTTGCGCACCTCAGCACGCTTGCGCTC
GATCTCAGCCTGTTTAGCCTTCTTAGCCTCATCATCAGCCATGTCGACTG
ATAACT
BO05982.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7178-PD | 627 | wupA-RD | 1..624 | 642..19 | 3120 | 100 | Minus |
CG7178-PE | 627 | wupA-RE | 1..624 | 642..19 | 3120 | 100 | Minus |
CG7178-PC | 627 | wupA-RC | 1..279 | 642..364 | 1345 | 99.2 | Minus |
CG7178-PF | 627 | wupA-RF | 1..279 | 642..364 | 1345 | 99.2 | Minus |
CG7178-PA | 627 | wupA-RA | 1..268 | 642..375 | 1340 | 100 | Minus |
CG7178-PB | 627 | wupA-RB | 1..268 | 642..375 | 1340 | 100 | Minus |
CG7178-PC | 627 | wupA-RC | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PF | 627 | wupA-RF | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PA | 627 | wupA-RA | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PB | 627 | wupA-RB | 367..624 | 276..19 | 1290 | 100 | Minus |
CG7178-PG | 810 | wupA-RG | 550..807 | 276..19 | 1290 | 100 | Minus |
CG7178-PG | 810 | wupA-RG | 196..462 | 630..364 | 1285 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 1129 | CG7178-RE | 110..733 | 642..19 | 3120 | 100 | Minus |
wupA-RD | 1257 | CG7178-RD | 238..861 | 642..19 | 3120 | 100 | Minus |
wupA-RI | 1029 | CG7178-RI | 141..697 | 642..86 | 2785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18106681..18106822 | 88..229 | 710 | 100 | Plus |
X | 23542271 | X | 18113447..18113577 | 499..629 | 655 | 100 | Plus |
X | 23542271 | X | 18113258..18113382 | 375..499 | 625 | 100 | Plus |
X | 23542271 | X | 18110504..18110606 | 274..376 | 515 | 100 | Plus |
X | 23542271 | X | 18105964..18106034 | 19..89 | 355 | 100 | Plus |
X | 23542271 | X | 18106888..18106933 | 230..275 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:02:13 has no hits.
BO05982.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:29 Download gff for
BO05982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-PD | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:01 Download gff for
BO05982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7178-PE | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:59 Download gff for
BO05982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 136..772 | 9..647 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:49 Download gff for
BO05982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 233..869 | 9..647 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:49 Download gff for
BO05982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18113447..18113575 | 499..627 | 100 | <- | Plus |
X | 18105956..18106032 | 9..87 | 94 | <- | Plus |
X | 18106681..18106822 | 88..229 | 100 | <- | Plus |
X | 18106888..18106931 | 230..273 | 100 | <- | Plus |
X | 18110504..18110604 | 274..374 | 100 | <- | Plus |
X | 18113258..18113381 | 375..498 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:59 Download gff for
BO05982.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18007291..18007414 | 375..498 | 100 | <- | Plus |
arm_X | 18000714..18000855 | 88..229 | 100 | <- | Plus |
arm_X | 18000921..18000964 | 230..273 | 100 | <- | Plus |
arm_X | 18004537..18004637 | 274..374 | 100 | <- | Plus |
arm_X | 17999989..18000065 | 9..87 | 94 | <- | Plus |
arm_X | 18007480..18007608 | 499..627 | 100 | <- | Plus |
BO05982.5prime Sequence
656 bp (655 high quality bases) assembled on 2005-11-29
> BO05982.5prime
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTGCAAGCTTTC
TAGACC
BO05982.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7178-PD | 627 | wupA-RD | 1..624 | 17..640 | 3120 | 100 | Plus |
CG7178-PE | 627 | wupA-RE | 1..624 | 17..640 | 3120 | 100 | Plus |
CG7178-PC | 627 | wupA-RC | 1..279 | 17..295 | 1345 | 99.2 | Plus |
CG7178-PF | 627 | wupA-RF | 1..279 | 17..295 | 1345 | 99.2 | Plus |
CG7178-PA | 627 | wupA-RA | 1..268 | 17..284 | 1340 | 100 | Plus |
CG7178-PB | 627 | wupA-RB | 1..268 | 17..284 | 1340 | 100 | Plus |
CG7178-PC | 627 | wupA-RC | 367..624 | 383..640 | 1290 | 100 | Plus |
CG7178-PF | 627 | wupA-RF | 367..624 | 383..640 | 1290 | 100 | Plus |
CG7178-PA | 627 | wupA-RA | 367..624 | 383..640 | 1290 | 100 | Plus |
CG7178-PB | 627 | wupA-RB | 367..624 | 383..640 | 1290 | 100 | Plus |
CG7178-PG | 810 | wupA-RG | 550..807 | 383..640 | 1290 | 100 | Plus |
CG7178-PG | 810 | wupA-RG | 196..462 | 29..295 | 1285 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 1129 | CG7178-RE | 110..733 | 17..640 | 3120 | 100 | Plus |
wupA-RD | 1257 | CG7178-RD | 238..861 | 17..640 | 3120 | 100 | Plus |
wupA-RI | 1029 | CG7178-RI | 141..697 | 17..573 | 2785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18106681..18106822 | 571..430 | 710 | 100 | Minus |
X | 23542271 | X | 18113447..18113577 | 160..30 | 655 | 100 | Minus |
X | 23542271 | X | 18113258..18113382 | 284..160 | 625 | 100 | Minus |
X | 23542271 | X | 18110504..18110606 | 385..283 | 515 | 100 | Minus |
X | 23542271 | X | 18105964..18106034 | 640..570 | 355 | 100 | Minus |
X | 23542271 | X | 18106888..18106933 | 429..384 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:09:26 has no hits.
BO05982.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:30 Download gff for
BO05982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-PD | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:03 Download gff for
BO05982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7178-PE | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:07 Download gff for
BO05982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 136..772 | 12..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:21 Download gff for
BO05982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 233..869 | 12..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:21 Download gff for
BO05982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18105956..18106032 | 572..650 | 94 | <- | Minus |
X | 18106681..18106822 | 430..571 | 100 | <- | Minus |
X | 18106888..18106931 | 386..429 | 100 | <- | Minus |
X | 18110504..18110604 | 285..385 | 100 | <- | Minus |
X | 18113258..18113381 | 161..284 | 100 | <- | Minus |
X | 18113447..18113575 | 32..160 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:07 Download gff for
BO05982.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17999989..18000065 | 572..650 | 94 | <- | Minus |
arm_X | 18000714..18000855 | 430..571 | 100 | <- | Minus |
arm_X | 18000921..18000964 | 386..429 | 100 | <- | Minus |
arm_X | 18004537..18004637 | 285..385 | 100 | <- | Minus |
arm_X | 18007291..18007414 | 161..284 | 100 | <- | Minus |
arm_X | 18007480..18007608 | 32..160 | 100 | <- | Minus |
BO05982.complete Sequence
658 bp (658 high quality bases) assembled on 2005-10-19
GenBank Submission: FJ630211
> BO05982.complete
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTGCAAGCTTTC
TAGACCAT
BO05982.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 627 | CG7178-PE | 1..624 | 17..640 | 3120 | 100 | Plus |
wupA-RD | 627 | CG7178-PD | 1..624 | 17..640 | 3120 | 100 | Plus |
wupA-RI | 600 | CG7178-PI | 1..557 | 17..573 | 2785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-RE | 1129 | CG7178-RE | 110..733 | 17..640 | 3120 | 100 | Plus |
wupA-RD | 1257 | CG7178-RD | 238..861 | 17..640 | 3120 | 100 | Plus |
wupA-RI | 1029 | CG7178-RI | 141..697 | 17..573 | 2785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18106681..18106822 | 571..430 | 710 | 100 | Minus |
X | 23542271 | X | 18113447..18113577 | 160..30 | 655 | 100 | Minus |
X | 23542271 | X | 18113258..18113382 | 284..160 | 625 | 100 | Minus |
X | 23542271 | X | 18110504..18110606 | 385..283 | 515 | 100 | Minus |
X | 23542271 | X | 18105964..18106034 | 640..570 | 355 | 100 | Minus |
X | 23542271 | X | 18106888..18106933 | 429..384 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:56:10 has no hits.
BO05982.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:54 Download gff for
BO05982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RE | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:57 Download gff for
BO05982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RE | 99..735 | 12..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:21 Download gff for
BO05982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 141..764 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:54 Download gff for
BO05982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RE | 99..735 | 12..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:36 Download gff for
BO05982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wupA-RD | 238..861 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:36 Download gff for
BO05982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18105962..18106032 | 572..642 | 97 | <- | Minus |
X | 18106681..18106822 | 430..571 | 100 | <- | Minus |
X | 18106888..18106931 | 386..429 | 100 | <- | Minus |
X | 18110504..18110604 | 285..385 | 100 | <- | Minus |
X | 18113258..18113381 | 161..284 | 100 | <- | Minus |
X | 18113447..18113575 | 32..160 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:21 Download gff for
BO05982.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17999995..18000065 | 572..642 | 97 | <- | Minus |
arm_X | 18000714..18000855 | 430..571 | 100 | <- | Minus |
arm_X | 18000921..18000964 | 386..429 | 100 | <- | Minus |
arm_X | 18004537..18004637 | 285..385 | 100 | <- | Minus |
arm_X | 18007291..18007414 | 161..284 | 100 | <- | Minus |
arm_X | 18007480..18007608 | 32..160 | 100 | <- | Minus |
BO05982.pep Sequence
Translation from 16 to 658
> BO05982.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEAELQTICKQYW
QRVYSLEGDKFDLEHVQKVKAQEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEAASFLDH
BO05982.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wupA-PE | 208 | CG7178-PE | 1..208 | 1..208 | 1047 | 100 | Plus |
wupA-PD | 208 | CG7178-PD | 1..208 | 1..208 | 1047 | 100 | Plus |
wupA-PF | 208 | CG7178-PF | 1..208 | 1..208 | 952 | 91.3 | Plus |
wupA-PC | 208 | CG7178-PC | 1..208 | 1..208 | 952 | 91.3 | Plus |
wupA-PI | 199 | CG7178-PI | 1..187 | 1..187 | 934 | 100 | Plus |