Clone BO05982 Report

Search the DGRC for BO05982

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:59
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptwupA-RD
Protein status:BO05982.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO05982.3prime Sequence

656 bp (655 high quality bases) assembled on 2005-12-02

> BO05982.3prime
ATGGTCTAGAAAGCTTGCAGCTTCGGCCTCAACCTCCTCCTTCACCTTGG
CATCTCCGGGCTTGCCCTTGGACCAGTCGGGTTTCTTCTCCTTCTCCTCC
TCCTCCAGCGTGAACTCCTTCTTCTTCACCACCTTGAGCTGGTTGCGGAA
GTTGAACTCAGCGGCCTTCTTCTGCAGCTTGGCGAATTTGTTTTCGTATT
TGGAGACCTTCTTCAGGGCTGGCTTGACGAACTTGCCGCGAAGATCGTTA
ACTTGGGCATTGAGATCGTTGATCTCTTGGGCCTTGACTTTCTGCACGTG
TTCTAAATCAAACTTATCGCCCTCCAAACTGTATACGCGTTGCCAATATT
GTTTGCATATTGTTTGCAGTTCGGCTTCGCTGGCATCGCTGAGATTCCTG
GGACTGCCGCAACGTTCTTCGATGATGCGTCTACGTTCAGCCGCTTTGCG
TTCCTGTTCTTTCTTCAGCTCCTCAGCGGCTTTCTTACGCAGCAGCAACC
TGAGTTTCTTCTTCCTCTCTGGGGTCATGAAACCCTTCTTGGCCTTCTTG
GCCTTGGAGGCTTCCTCCATGCGCTTGCGCACCTCAGCACGCTTGCGCTC
GATCTCAGCCTGTTTAGCCTTCTTAGCCTCATCATCAGCCATGTCGACTG
ATAACT

BO05982.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7178-PD 627 wupA-RD 1..624 642..19 3120 100 Minus
CG7178-PE 627 wupA-RE 1..624 642..19 3120 100 Minus
CG7178-PC 627 wupA-RC 1..279 642..364 1345 99.2 Minus
CG7178-PF 627 wupA-RF 1..279 642..364 1345 99.2 Minus
CG7178-PA 627 wupA-RA 1..268 642..375 1340 100 Minus
CG7178-PB 627 wupA-RB 1..268 642..375 1340 100 Minus
CG7178-PC 627 wupA-RC 367..624 276..19 1290 100 Minus
CG7178-PF 627 wupA-RF 367..624 276..19 1290 100 Minus
CG7178-PA 627 wupA-RA 367..624 276..19 1290 100 Minus
CG7178-PB 627 wupA-RB 367..624 276..19 1290 100 Minus
CG7178-PG 810 wupA-RG 550..807 276..19 1290 100 Minus
CG7178-PG 810 wupA-RG 196..462 630..364 1285 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 1129 CG7178-RE 110..733 642..19 3120 100 Minus
wupA-RD 1257 CG7178-RD 238..861 642..19 3120 100 Minus
wupA-RI 1029 CG7178-RI 141..697 642..86 2785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18106681..18106822 88..229 710 100 Plus
X 23542271 X 18113447..18113577 499..629 655 100 Plus
X 23542271 X 18113258..18113382 375..499 625 100 Plus
X 23542271 X 18110504..18110606 274..376 515 100 Plus
X 23542271 X 18105964..18106034 19..89 355 100 Plus
X 23542271 X 18106888..18106933 230..275 230 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:02:13 has no hits.

BO05982.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:29 Download gff for BO05982.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-PD 1..627 15..642 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:01 Download gff for BO05982.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7178-PE 1..627 15..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:03:59 Download gff for BO05982.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 136..772 9..647 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:49 Download gff for BO05982.3prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 233..869 9..647 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:49 Download gff for BO05982.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18113447..18113575 499..627 100 <- Plus
X 18105956..18106032 9..87 94 <- Plus
X 18106681..18106822 88..229 100 <- Plus
X 18106888..18106931 230..273 100 <- Plus
X 18110504..18110604 274..374 100 <- Plus
X 18113258..18113381 375..498 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:03:59 Download gff for BO05982.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18007291..18007414 375..498 100 <- Plus
arm_X 18000714..18000855 88..229 100 <- Plus
arm_X 18000921..18000964 230..273 100 <- Plus
arm_X 18004537..18004637 274..374 100 <- Plus
arm_X 17999989..18000065 9..87 94 <- Plus
arm_X 18007480..18007608 499..627 100 <- Plus

BO05982.5prime Sequence

656 bp (655 high quality bases) assembled on 2005-11-29

> BO05982.5prime
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTGCAAGCTTTC
TAGACC

BO05982.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7178-PD 627 wupA-RD 1..624 17..640 3120 100 Plus
CG7178-PE 627 wupA-RE 1..624 17..640 3120 100 Plus
CG7178-PC 627 wupA-RC 1..279 17..295 1345 99.2 Plus
CG7178-PF 627 wupA-RF 1..279 17..295 1345 99.2 Plus
CG7178-PA 627 wupA-RA 1..268 17..284 1340 100 Plus
CG7178-PB 627 wupA-RB 1..268 17..284 1340 100 Plus
CG7178-PC 627 wupA-RC 367..624 383..640 1290 100 Plus
CG7178-PF 627 wupA-RF 367..624 383..640 1290 100 Plus
CG7178-PA 627 wupA-RA 367..624 383..640 1290 100 Plus
CG7178-PB 627 wupA-RB 367..624 383..640 1290 100 Plus
CG7178-PG 810 wupA-RG 550..807 383..640 1290 100 Plus
CG7178-PG 810 wupA-RG 196..462 29..295 1285 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 1129 CG7178-RE 110..733 17..640 3120 100 Plus
wupA-RD 1257 CG7178-RD 238..861 17..640 3120 100 Plus
wupA-RI 1029 CG7178-RI 141..697 17..573 2785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18106681..18106822 571..430 710 100 Minus
X 23542271 X 18113447..18113577 160..30 655 100 Minus
X 23542271 X 18113258..18113382 284..160 625 100 Minus
X 23542271 X 18110504..18110606 385..283 515 100 Minus
X 23542271 X 18105964..18106034 640..570 355 100 Minus
X 23542271 X 18106888..18106933 429..384 230 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:09:26 has no hits.

BO05982.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:30 Download gff for BO05982.5prime
Subject Subject Range Query Range Percent Splice Strand
wupA-PD 1..627 17..644 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:03 Download gff for BO05982.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7178-PE 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:07 Download gff for BO05982.5prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 136..772 12..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:21 Download gff for BO05982.5prime
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 233..869 12..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:21 Download gff for BO05982.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18105956..18106032 572..650 94 <- Minus
X 18106681..18106822 430..571 100 <- Minus
X 18106888..18106931 386..429 100 <- Minus
X 18110504..18110604 285..385 100 <- Minus
X 18113258..18113381 161..284 100 <- Minus
X 18113447..18113575 32..160 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:07 Download gff for BO05982.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999989..18000065 572..650 94 <- Minus
arm_X 18000714..18000855 430..571 100 <- Minus
arm_X 18000921..18000964 386..429 100 <- Minus
arm_X 18004537..18004637 285..385 100 <- Minus
arm_X 18007291..18007414 161..284 100 <- Minus
arm_X 18007480..18007608 32..160 100 <- Minus

BO05982.complete Sequence

658 bp (658 high quality bases) assembled on 2005-10-19

GenBank Submission: FJ630211

> BO05982.complete
GAAGTTATCAGTCGACATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGCCGAACTGCAAACAAT
ATGCAAACAATATTGGCAACGCGTATACAGTTTGGAGGGCGATAAGTTTG
ATTTAGAACACGTGCAGAAAGTCAAGGCCCAAGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTGCAAGCTTTC
TAGACCAT

BO05982.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 627 CG7178-PE 1..624 17..640 3120 100 Plus
wupA-RD 627 CG7178-PD 1..624 17..640 3120 100 Plus
wupA-RI 600 CG7178-PI 1..557 17..573 2785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-RE 1129 CG7178-RE 110..733 17..640 3120 100 Plus
wupA-RD 1257 CG7178-RD 238..861 17..640 3120 100 Plus
wupA-RI 1029 CG7178-RI 141..697 17..573 2785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18106681..18106822 571..430 710 100 Minus
X 23542271 X 18113447..18113577 160..30 655 100 Minus
X 23542271 X 18113258..18113382 284..160 625 100 Minus
X 23542271 X 18110504..18110606 385..283 515 100 Minus
X 23542271 X 18105964..18106034 640..570 355 100 Minus
X 23542271 X 18106888..18106933 429..384 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:56:10 has no hits.

BO05982.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:38:54 Download gff for BO05982.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 1..627 17..644 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:52:57 Download gff for BO05982.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 99..735 12..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:21 Download gff for BO05982.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 141..764 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:38:54 Download gff for BO05982.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RE 99..735 12..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:36 Download gff for BO05982.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RD 238..861 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:36 Download gff for BO05982.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105962..18106032 572..642 97 <- Minus
X 18106681..18106822 430..571 100 <- Minus
X 18106888..18106931 386..429 100 <- Minus
X 18110504..18110604 285..385 100 <- Minus
X 18113258..18113381 161..284 100 <- Minus
X 18113447..18113575 32..160 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:21 Download gff for BO05982.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999995..18000065 572..642 97 <- Minus
arm_X 18000714..18000855 430..571 100 <- Minus
arm_X 18000921..18000964 386..429 100 <- Minus
arm_X 18004537..18004637 285..385 100 <- Minus
arm_X 18007291..18007414 161..284 100 <- Minus
arm_X 18007480..18007608 32..160 100 <- Minus

BO05982.pep Sequence

Translation from 16 to 658

> BO05982.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEAELQTICKQYW
QRVYSLEGDKFDLEHVQKVKAQEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEAASFLDH

BO05982.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PE 208 CG7178-PE 1..208 1..208 1047 100 Plus
wupA-PD 208 CG7178-PD 1..208 1..208 1047 100 Plus
wupA-PF 208 CG7178-PF 1..208 1..208 952 91.3 Plus
wupA-PC 208 CG7178-PC 1..208 1..208 952 91.3 Plus
wupA-PI 199 CG7178-PI 1..187 1..187 934 100 Plus