Clone Sequence Records
BO06001.3prime Sequence
750 bp (725 high quality bases) assembled on 2005-12-02
> BO06001.3prime
ATGGTCTAGAAAGCTTGCTGACTCTTGGTCCACTACAACTTCATGACTTA
AATGCTCGAAACGCCCTTCGATTAGCTGACTGGCCAGGCAATCTCCGCAC
AGATTAAGGTAACAATAACAACTGTTACAACGCCATTGGGTCCTGGTCAC
AGATGCCTCTTCGCACTCGGCACACTTGGCGGCCAGCAAGTCTGGCTCAT
ATCCGTCCTCCATTTCCCGTTTCTCGTCCTGAATGGCTGATAGAAGCTTA
AGGCATAGTTCCTGTTTTCGCTTTGACTCCGCATTCAGATCGGCATCCAT
GTACTCGGATTCGATCTTTGGTTCGATCTTGGATGCCGGCATAAGGAGCA
TATCGCTCGCAGGCGATGGGATTCGCAGGTCGTCAAATGTGAAATCGTCC
TCTGGCATTTGTAGCGATATATTATGAGCGGGGAAGAAGGTTGACTTGCG
AAGTTTGATCTTCGGCTTACTCAAACCAGGACGTCGATGCTTGGGTATGC
GACCGGGCACAGGCATTCCGGCATCGTGCAGCTTTTGGAAATACTTCTGG
ACACGACTATACACTTGCTGTGCCGTTCTGTTGCCCAAGGCCTTCGCTAT
CTTCCCGAATCTGCGCATTTCCACTTCCTCTGGCGGATACTGGATGAGCA
GCTGCTCCAAGCGACTCTGCTCTTCGTTGGTCCACAAGCGATTGAAATTC
TCCGACCGTCCATTGCTCCTGTCCCGATTTCTGTTCGCCTCTTGCGTCCA
BO06001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9200-PA | 1071 | CG9200-RA | 337..1068 | 750..19 | 3610 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1230 | CG9200-RA | 412..1143 | 750..19 | 3630 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6959186..6959917 | 19..750 | 3630 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:56:59 has no hits.
BO06001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:55 Download gff for
BO06001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 338..1071 | 16..749 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:39 Download gff for
BO06001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 338..1071 | 16..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:50 Download gff for
BO06001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 413..1156 | 5..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:07 Download gff for
BO06001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 413..1156 | 5..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:07 Download gff for
BO06001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6959173..6959916 | 5..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:50 Download gff for
BO06001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6959173..6959916 | 5..749 | 99 | | Plus |
BO06001.5prime Sequence
653 bp (625 high quality bases) assembled on 2005-10-17
> BO06001.5prime
CAGTCGACATGGAAATAGCACACCCCATCTGCAGAAGATGAGGATGTGTT
TCACTTTGAGACCGAGCACCTGGCCCTGCGTGGCAACCAGTGCTATACCA
ATTTGCTGCGCACTTTGGCCGTGCTGCAGGCACAAAGGATTCGGGTGCAT
CAGCAGATTGAGGAATTGGAAGCCACACAAAATATCTACTTGGAGAATCC
GCAACATATGCTGGACAAACTGCGAAACAACGAGCCTTTGATAGCGGATA
ATTACATCACCACGACCGTTCTACCGGACTTGCCAACTCTGTCGCCCAAT
GACGAGGAAGGGGGCACAAATGAGACACCGACCGATGCGTCTTCATGGAC
GCAAGAGGCGAACAAGAATCGGGACAGGAGCAATGGACGGTCGGAGAATT
TCAATCGCTTGTGGACCAACGAAGAGCAGAGTCGCTTGGAGCAGCTGCTC
ATCCAGTATCCGCCAGAGGAAGTGGAAATGCGCAGATTCGGGAAGATAGC
GAAGGCCTTGGGCAACAGAACGGCACAGCAAGTGTATAGTCGTGTCCAGA
AGTATTTCCAAAAGCTGCACGATGCCGGAATGCCTGTGCCCGGTCGCATA
CCCAAGCATCGACGTCCTGGTTTGAGTAAGCCGAAGATCAAACTTCGCAA
GTC
BO06001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9200-PA | 1071 | CG9200-RA | 18..644 | 27..653 | 3135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1230 | CG9200-RA | 76..719 | 9..653 | 3140 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6959610..6960236 | 653..27 | 3135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:59:57 has no hits.
BO06001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:57 Download gff for
BO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 1..644 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:40 Download gff for
BO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9200-PA | 1..644 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:49 Download gff for
BO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 73..719 | 3..653 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:03 Download gff for
BO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 73..719 | 3..653 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:03 Download gff for
BO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6959610..6960234 | 29..653 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:49 Download gff for
BO06001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6959610..6960234 | 29..653 | 100 | -> | Minus |
BO06001.complete Sequence
1102 bp assembled on 2008-08-15
GenBank Submission: FJ630213
> BO06001.complete
GAAGTTATCAGTCGACATGGAAATAGCAGAGATATCTGCAGAAGATGAGG
ATGTGTTTCACTTTGAGACCGAGCACCTGGCCCTGCGTGGCAACCAGTGC
TATACCAATTTGCTGCGCACTTTGGCCGTGCTGCAGGCACAAAGGATTCG
GGTGCATCAGCAGATTGAGGAATTGGAAGCCACACAAAATATCTACTTGG
AGAATCCGCAACATATGCTGGACAAACTGCGAAACAACGAGCCTTTGATA
GCGGATAATTACATCACCACGACCGTTCTACCGGACTTGCCAACTCTGTC
GCCCAATGACGAGGAAGGGGGCACAAATGAGACACCGACCGATGCGTCTT
CATGGACGCAAGAGGCGAACAAGAATCGGGACAGGAGCAATGGACGGTCG
GAGAATTTCAATCGCTTGTGGACCAACGAAGAGCAGAGTCGCTTGGAGCA
GCTGCTCATCCAGTATCCGCCAGAGGAAGTGGAAATGCGCAGATTCGGGA
AGATAGCGAAGGCCTTGGGCAACAGAACGGCACAGCAAGTGTATAGTCGT
GTCCAGAAGTATTTCCAAAAGCTGCACGATGCCGGAATGCCTGTGCCCGG
TCGCATACCCAAGCATCGACGTCCTGGTTTGAGTAAGCCGAAGATCAAAC
TTCGCAAGTCAACCTTCTTCCCCGCTCATAATATATCGCTACAAATGCCA
GAGGACGATTTCACATTTGACGACCTGCGAATCCCATCGCCTGCGAGCGA
TATGCTCCTTATGCCGGCATCCAAGATCGAACCAAAGATCGAATCCGAGT
ACATGGATGCCGATCTGAATGCGGAGTCAAAGCGAAAACAGGAACTATGC
CTTAAGCTTCTATCAGCCATTCAGGACGAGAAACGGGAAATGGAGGACGG
ATATGAGCCAGACTTGCTGGCCGCCAAGTGTGCCGAGTGCGAAGAGGCAT
CTGTGACCAGGACCCAATGGCGTTGTAACAGTTGTTATTGTTACCTTAAT
CTGTGCGGAGATTGCCTGGCCAGTCAGCTAATCGAAGGGCGTTTCGAGCA
TTTAAGTCATGAAGTTGTAGTGGACCAAGAGTCAGCAAGCTTTCTAGACC
AT
BO06001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:21:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1071 | CG9200-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-RA | 1230 | CG9200-RA | 76..1143 | 17..1084 | 5340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6959186..6960253 | 1084..17 | 5340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:21:46 has no hits.
BO06001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:05 Download gff for
BO06001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 21..1104 | 11..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:47 Download gff for
BO06001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 76..1143 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:21 Download gff for
BO06001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 24..1091 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:50 Download gff for
BO06001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac1-RA | 76..1143 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:50 Download gff for
BO06001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6959182..6960253 | 17..1086 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:47 Download gff for
BO06001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6959182..6960253 | 17..1086 | 99 | | Minus |
BO06001.pep Sequence
Translation from 16 to 1102
> BO06001.pep
MEIAEISAEDEDVFHFETEHLALRGNQCYTNLLRTLAVLQAQRIRVHQQI
EELEATQNIYLENPQHMLDKLRNNEPLIADNYITTTVLPDLPTLSPNDEE
GGTNETPTDASSWTQEANKNRDRSNGRSENFNRLWTNEEQSRLEQLLIQY
PPEEVEMRRFGKIAKALGNRTAQQVYSRVQKYFQKLHDAGMPVPGRIPKH
RRPGLSKPKIKLRKSTFFPAHNISLQMPEDDFTFDDLRIPSPASDMLLMP
ASKIEPKIESEYMDADLNAESKRKQELCLKLLSAIQDEKREMEDGYEPDL
LAAKCAECEEASVTRTQWRCNSCYCYLNLCGDCLASQLIEGRFEHLSHEV
VVDQESASFLDH
BO06001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac1-PA | 356 | CG9200-PA | 1..356 | 1..356 | 1871 | 100 | Plus |
