Clone Sequence Records
BO06002.3prime Sequence
635 bp (634 high quality bases) assembled on 2005-12-02
> BO06002.3prime
ATGGTCTAGAAAGCTTGCAAGTAGGGTACACTTAAGTCTCCGCTTCTTGC
ATCTATCTTTAGCACGCCCGCTCGTGGCTTTCGAATCTTCGGTTTTTCGT
GATCTTATTTCGCGCATCAAATCAAAAAATACCTTGTCCACATTTTCGCG
GGTTTTAGCCGAGGTCTCCACATAGGGCACCGCCCACTGCTGCGCCCTCA
GCTGGCACTCGCTCAGCGGCACCTTGCGCTTATCATTCAGATCGCACTTG
TTGCCCACCAGCAGGAACGGTATGCTCTCATCATTCTTCACCCGCAAGAT
TTGTTCTCTGAATTCCTGGGTTGCCTGGAAGCTTTCGTCGTCTGTGATGG
AGAAGACGCAAAGGAAACCCTCGCCGCTGCGAAAGTAGTTATCTCTGATG
GCGGCATAATCCTCCTGGCCAGCCGTATCCAATATATCTATTTGTACTTC
CTCGCCGTCCAGCACAACCTTTTTCCTATAGCTATCGGCCTTGGTGGGCT
CGTAGTCCTCGACGAACTCATCGTACATAAACTGCAGTGTGAGGGCGGAC
TTTCCCACGCCGCCACTGCCCACCATTATGACCTTGTGGAGCGCCGGTCC
GGCTGTCGGCTTCTTGCTCATGTCGACTGATAACT
BO06002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2849-PA | 606 | Rala-RA | 1..603 | 621..19 | 3015 | 100 | Minus |
CG2849-PC | 606 | Rala-RC | 1..603 | 621..19 | 3015 | 100 | Minus |
CG2849-PB | 594 | Rala-RB | 1..496 | 621..126 | 2480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 2555 | CG2849-RC | 300..903 | 622..19 | 3020 | 100 | Minus |
Rala-RA | 2377 | CG2849-RA | 496..1099 | 622..19 | 3020 | 100 | Minus |
Rala-RB | 2057 | CG2849-RB | 300..801 | 622..121 | 2495 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3708742..3708923 | 131..312 | 910 | 100 | Plus |
X | 23542271 | X | 3709836..3709998 | 308..470 | 815 | 100 | Plus |
X | 23542271 | X | 3710067..3710222 | 467..622 | 780 | 100 | Plus |
X | 23542271 | X | 3707378..3707493 | 19..134 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:48:11 has no hits.
BO06002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:57 Download gff for
BO06002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-PA | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:41 Download gff for
BO06002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2849-PC | 1..606 | 18..621 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:32 Download gff for
BO06002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1107 | 10..622 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:57 Download gff for
BO06002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1107 | 10..622 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:57 Download gff for
BO06002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3709836..3709996 | 308..468 | 100 | <- | Plus |
X | 3710069..3710222 | 469..622 | 100 | | Plus |
X | 3707370..3707491 | 10..132 | 96 | <- | Plus |
X | 3708744..3708918 | 133..307 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:32 Download gff for
BO06002.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3601403..3601524 | 10..132 | 96 | <- | Plus |
arm_X | 3602777..3602951 | 133..307 | 100 | <- | Plus |
arm_X | 3603869..3604029 | 308..468 | 100 | <- | Plus |
arm_X | 3604102..3604255 | 469..622 | 100 | | Plus |
BO06002.5prime Sequence
635 bp (634 high quality bases) assembled on 2005-11-29
> BO06002.5prime
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTGCAAGCTTTCTAGACC
BO06002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2849-PA | 606 | Rala-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
CG2849-PC | 606 | Rala-RC | 1..603 | 17..619 | 3015 | 100 | Plus |
CG2849-PB | 594 | Rala-RB | 1..496 | 17..512 | 2480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 2555 | CG2849-RC | 300..903 | 16..619 | 3020 | 100 | Plus |
Rala-RA | 2377 | CG2849-RA | 496..1099 | 16..619 | 3020 | 100 | Plus |
Rala-RB | 2057 | CG2849-RB | 300..801 | 16..517 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3708742..3708923 | 507..326 | 910 | 100 | Minus |
X | 23542271 | X | 3709836..3709998 | 330..168 | 815 | 100 | Minus |
X | 23542271 | X | 3710067..3710222 | 171..16 | 780 | 100 | Minus |
X | 23542271 | X | 3707378..3707493 | 619..504 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:00:10 has no hits.
BO06002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:58 Download gff for
BO06002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-PA | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:43 Download gff for
BO06002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2849-PC | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:53 Download gff for
BO06002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1107 | 16..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:15 Download gff for
BO06002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 496..1107 | 16..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:15 Download gff for
BO06002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3710069..3710222 | 16..169 | 100 | | Minus |
X | 3707370..3707491 | 506..628 | 96 | <- | Minus |
X | 3708744..3708918 | 331..505 | 100 | <- | Minus |
X | 3709836..3709996 | 170..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:53 Download gff for
BO06002.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3601403..3601524 | 506..628 | 96 | <- | Minus |
arm_X | 3602777..3602951 | 331..505 | 100 | <- | Minus |
arm_X | 3603869..3604029 | 170..330 | 100 | <- | Minus |
arm_X | 3604102..3604255 | 16..169 | 100 | | Minus |
BO06002.complete Sequence
637 bp (637 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630214
> BO06002.complete
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTGCAAGCTTTCTAGACCAT
BO06002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 606 | CG2849-PC | 1..603 | 17..619 | 3015 | 100 | Plus |
Rala-RA | 606 | CG2849-PA | 1..603 | 17..619 | 3015 | 100 | Plus |
Rala-RB | 594 | CG2849-PB | 1..501 | 17..517 | 2490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-RC | 2555 | CG2849-RC | 300..903 | 16..619 | 3020 | 100 | Plus |
Rala-RA | 2377 | CG2849-RA | 496..1099 | 16..619 | 3020 | 100 | Plus |
Rala-RB | 2057 | CG2849-RB | 300..801 | 16..517 | 2495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3708742..3708923 | 507..326 | 910 | 100 | Minus |
X | 23542271 | X | 3709836..3709998 | 330..168 | 815 | 100 | Minus |
X | 23542271 | X | 3710067..3710222 | 171..16 | 780 | 100 | Minus |
X | 23542271 | X | 3707378..3707493 | 619..504 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:56:59 has no hits.
BO06002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:06 Download gff for
BO06002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RC | 1..606 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:27 Download gff for
BO06002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RC | 297..908 | 16..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:24 Download gff for
BO06002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 497..1099 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:07 Download gff for
BO06002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RC | 297..908 | 16..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:36 Download gff for
BO06002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rala-RA | 497..1099 | 17..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:36 Download gff for
BO06002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3707376..3707491 | 506..621 | 98 | <- | Minus |
X | 3708744..3708918 | 331..505 | 100 | <- | Minus |
X | 3709836..3709996 | 170..330 | 100 | <- | Minus |
X | 3710069..3710221 | 17..169 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:24 Download gff for
BO06002.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3604102..3604254 | 17..169 | 100 | | Minus |
arm_X | 3603869..3604029 | 170..330 | 100 | <- | Minus |
arm_X | 3601409..3601524 | 506..621 | 98 | <- | Minus |
arm_X | 3602777..3602951 | 331..505 | 100 | <- | Minus |
BO06002.pep Sequence
Translation from 16 to 637
> BO06002.pep
MSKKPTAGPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK
KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQA
TQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPY
VETSAKTRENVDKVFFDLMREIRSRKTEDSKATSGRAKDRCKKRRLKCTL
LASFLDH
BO06002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rala-PC | 201 | CG2849-PC | 1..201 | 1..201 | 1036 | 100 | Plus |
Rala-PA | 201 | CG2849-PA | 1..201 | 1..201 | 1036 | 100 | Plus |
Rala-PB | 197 | CG2849-PB | 1..178 | 1..178 | 892 | 96.6 | Plus |
Ras85D-PA | 189 | CG9375-PA | 4..189 | 12..201 | 494 | 52.1 | Plus |
Ras64B-PA | 192 | CG1167-PA | 6..192 | 12..201 | 451 | 46.3 | Plus |