Clone BO06002 Report

Search the DGRC for BO06002

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptRala-RA
Protein status:BO06002.pep: validated full length
Sequenced Size:637

Clone Sequence Records

BO06002.3prime Sequence

635 bp (634 high quality bases) assembled on 2005-12-02

> BO06002.3prime
ATGGTCTAGAAAGCTTGCAAGTAGGGTACACTTAAGTCTCCGCTTCTTGC
ATCTATCTTTAGCACGCCCGCTCGTGGCTTTCGAATCTTCGGTTTTTCGT
GATCTTATTTCGCGCATCAAATCAAAAAATACCTTGTCCACATTTTCGCG
GGTTTTAGCCGAGGTCTCCACATAGGGCACCGCCCACTGCTGCGCCCTCA
GCTGGCACTCGCTCAGCGGCACCTTGCGCTTATCATTCAGATCGCACTTG
TTGCCCACCAGCAGGAACGGTATGCTCTCATCATTCTTCACCCGCAAGAT
TTGTTCTCTGAATTCCTGGGTTGCCTGGAAGCTTTCGTCGTCTGTGATGG
AGAAGACGCAAAGGAAACCCTCGCCGCTGCGAAAGTAGTTATCTCTGATG
GCGGCATAATCCTCCTGGCCAGCCGTATCCAATATATCTATTTGTACTTC
CTCGCCGTCCAGCACAACCTTTTTCCTATAGCTATCGGCCTTGGTGGGCT
CGTAGTCCTCGACGAACTCATCGTACATAAACTGCAGTGTGAGGGCGGAC
TTTCCCACGCCGCCACTGCCCACCATTATGACCTTGTGGAGCGCCGGTCC
GGCTGTCGGCTTCTTGCTCATGTCGACTGATAACT

BO06002.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2849-PA 606 Rala-RA 1..603 621..19 3015 100 Minus
CG2849-PC 606 Rala-RC 1..603 621..19 3015 100 Minus
CG2849-PB 594 Rala-RB 1..496 621..126 2480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 2555 CG2849-RC 300..903 622..19 3020 100 Minus
Rala-RA 2377 CG2849-RA 496..1099 622..19 3020 100 Minus
Rala-RB 2057 CG2849-RB 300..801 622..121 2495 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3708742..3708923 131..312 910 100 Plus
X 23542271 X 3709836..3709998 308..470 815 100 Plus
X 23542271 X 3710067..3710222 467..622 780 100 Plus
X 23542271 X 3707378..3707493 19..134 580 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:48:11 has no hits.

BO06002.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:57 Download gff for BO06002.3prime
Subject Subject Range Query Range Percent Splice Strand
Rala-PA 1..606 18..621 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:41 Download gff for BO06002.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2849-PC 1..606 18..621 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:32 Download gff for BO06002.3prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1107 10..622 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:57 Download gff for BO06002.3prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1107 10..622 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:57 Download gff for BO06002.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3709836..3709996 308..468 100 <- Plus
X 3710069..3710222 469..622 100   Plus
X 3707370..3707491 10..132 96 <- Plus
X 3708744..3708918 133..307 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:32 Download gff for BO06002.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3601403..3601524 10..132 96 <- Plus
arm_X 3602777..3602951 133..307 100 <- Plus
arm_X 3603869..3604029 308..468 100 <- Plus
arm_X 3604102..3604255 469..622 100   Plus

BO06002.5prime Sequence

635 bp (634 high quality bases) assembled on 2005-11-29

> BO06002.5prime
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTGCAAGCTTTCTAGACC

BO06002.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2849-PA 606 Rala-RA 1..603 17..619 3015 100 Plus
CG2849-PC 606 Rala-RC 1..603 17..619 3015 100 Plus
CG2849-PB 594 Rala-RB 1..496 17..512 2480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 2555 CG2849-RC 300..903 16..619 3020 100 Plus
Rala-RA 2377 CG2849-RA 496..1099 16..619 3020 100 Plus
Rala-RB 2057 CG2849-RB 300..801 16..517 2495 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3708742..3708923 507..326 910 100 Minus
X 23542271 X 3709836..3709998 330..168 815 100 Minus
X 23542271 X 3710067..3710222 171..16 780 100 Minus
X 23542271 X 3707378..3707493 619..504 580 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:00:10 has no hits.

BO06002.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:58 Download gff for BO06002.5prime
Subject Subject Range Query Range Percent Splice Strand
Rala-PA 1..606 17..620 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:43 Download gff for BO06002.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2849-PC 1..606 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:53 Download gff for BO06002.5prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1107 16..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:15 Download gff for BO06002.5prime
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 496..1107 16..628 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:15 Download gff for BO06002.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3710069..3710222 16..169 100   Minus
X 3707370..3707491 506..628 96 <- Minus
X 3708744..3708918 331..505 100 <- Minus
X 3709836..3709996 170..330 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:53 Download gff for BO06002.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3601403..3601524 506..628 96 <- Minus
arm_X 3602777..3602951 331..505 100 <- Minus
arm_X 3603869..3604029 170..330 100 <- Minus
arm_X 3604102..3604255 16..169 100   Minus

BO06002.complete Sequence

637 bp (637 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630214

> BO06002.complete
GAAGTTATCAGTCGACATGAGCAAGAAGCCGACAGCCGGACCGGCGCTCC
ACAAGGTCATAATGGTGGGCAGTGGCGGCGTGGGAAAGTCCGCCCTCACA
CTGCAGTTTATGTACGATGAGTTCGTCGAGGACTACGAGCCCACCAAGGC
CGATAGCTATAGGAAAAAGGTTGTGCTGGACGGCGAGGAAGTACAAATAG
ATATATTGGATACGGCTGGCCAGGAGGATTATGCCGCCATCAGAGATAAC
TACTTTCGCAGCGGCGAGGGTTTCCTTTGCGTCTTCTCCATCACAGACGA
CGAAAGCTTCCAGGCAACCCAGGAATTCAGAGAACAAATCTTGCGGGTGA
AGAATGATGAGAGCATACCGTTCCTGCTGGTGGGCAACAAGTGCGATCTG
AATGATAAGCGCAAGGTGCCGCTGAGCGAGTGCCAGCTGAGGGCGCAGCA
GTGGGCGGTGCCCTATGTGGAGACCTCGGCTAAAACCCGCGAAAATGTGG
ACAAGGTATTTTTTGATTTGATGCGCGAAATAAGATCACGAAAAACCGAA
GATTCGAAAGCCACGAGCGGGCGTGCTAAAGATAGATGCAAGAAGCGGAG
ACTTAAGTGTACCCTACTTGCAAGCTTTCTAGACCAT

BO06002.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 606 CG2849-PC 1..603 17..619 3015 100 Plus
Rala-RA 606 CG2849-PA 1..603 17..619 3015 100 Plus
Rala-RB 594 CG2849-PB 1..501 17..517 2490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-RC 2555 CG2849-RC 300..903 16..619 3020 100 Plus
Rala-RA 2377 CG2849-RA 496..1099 16..619 3020 100 Plus
Rala-RB 2057 CG2849-RB 300..801 16..517 2495 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3708742..3708923 507..326 910 100 Minus
X 23542271 X 3709836..3709998 330..168 815 100 Minus
X 23542271 X 3710067..3710222 171..16 780 100 Minus
X 23542271 X 3707378..3707493 619..504 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:56:59 has no hits.

BO06002.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:06 Download gff for BO06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RC 1..606 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:27 Download gff for BO06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RC 297..908 16..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:24 Download gff for BO06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 497..1099 17..621 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:07 Download gff for BO06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RC 297..908 16..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:36 Download gff for BO06002.complete
Subject Subject Range Query Range Percent Splice Strand
Rala-RA 497..1099 17..621 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:36 Download gff for BO06002.complete
Subject Subject Range Query Range Percent Splice Strand
X 3707376..3707491 506..621 98 <- Minus
X 3708744..3708918 331..505 100 <- Minus
X 3709836..3709996 170..330 100 <- Minus
X 3710069..3710221 17..169 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:24 Download gff for BO06002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3604102..3604254 17..169 100   Minus
arm_X 3603869..3604029 170..330 100 <- Minus
arm_X 3601409..3601524 506..621 98 <- Minus
arm_X 3602777..3602951 331..505 100 <- Minus

BO06002.pep Sequence

Translation from 16 to 637

> BO06002.pep
MSKKPTAGPALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK
KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQA
TQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPY
VETSAKTRENVDKVFFDLMREIRSRKTEDSKATSGRAKDRCKKRRLKCTL
LASFLDH

BO06002.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rala-PC 201 CG2849-PC 1..201 1..201 1036 100 Plus
Rala-PA 201 CG2849-PA 1..201 1..201 1036 100 Plus
Rala-PB 197 CG2849-PB 1..178 1..178 892 96.6 Plus
Ras85D-PA 189 CG9375-PA 4..189 12..201 494 52.1 Plus
Ras64B-PA 192 CG1167-PA 6..192 12..201 451 46.3 Plus