Clone Sequence Records
BO06003.3prime Sequence
813 bp (778 high quality bases) assembled on 2005-12-02
> BO06003.3prime
ATGGTCTAGAAAGCTTGCATCGCTGCCCACCGCCGTCGTGGGCGTGCGCA
TGCTGAGGGGCGTGGCTGCGGGCGCAGTCACTGCCGGGGGATGGGGATCA
GAAGAGGAGGGAGCCGCATTCGTTGTCGTTGTTTCCTCCGCCGGCACACT
GCTACTTCTCTGAATGCTAAAGAATCGCAGGAGCGTCGTCTCGCTGTTTC
GCCTACTGGAAGTGGGCGTTTTTGGCTGGGATTGGGAATGGGAGTGCGAG
GAGCTGCCAGCCGGCGTGCCACCGCCTCCGTCCGTATGGGAGATGCGTCT
GCGGGGCGAGGCGTGTATCCTGGGACTGCACTCTGACTGCCGCAGACTCT
GGAGGCGCGGGGATGCCAGCACATCGGCCTGCTGCTCCTCGCTGATCTTT
TCGCTGAGCGTCACATGGGCCCTGCCACTCATCAGCTTCTGTTTGCGGAT
ATTCGTCAGCCAGTCCACCTTCTCCTTCGCCTTCCGCTTGGGCGACATGA
TGCCCAGGTGCGGTGCCTCGCCATCCAGCACGTAATTGGGCAGGTTGGAG
GTGGGCGAGTAGATGGCAGCGGAGATCGGCGGCGGATTAAGCGCGTCTGC
AGCCACCGCTGCTGCTGCCGCTGACGTGGTTGGCGGGGAGGTGTACACAT
GGTTGACATTCTCACTCAAAGGGGAATGACTTGGTGTGCTGAGAAGCTTG
TGCAGTGGTGAGACATCCTCCGCGGCAGAGTTCTCCTTTTGTCTCTTGCT
CGGCGAGGCATCTTCCTCGTTTATGGACTGAAGTTGTATGTGCCTGCAAG
CAGTTTCCTGGCT
BO06003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11295-PA | 2310 | l(2)dtl-RA | 1513..2307 | 813..19 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2653 | CG11295-RA | 1671..2465 | 813..19 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23704421..23705215 | 813..19 | 3975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:50:18 has no hits.
BO06003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:36:59 Download gff for
BO06003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1513..2310 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:44 Download gff for
BO06003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1513..2310 | 16..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:23 Download gff for
BO06003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 1671..2471 | 13..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:54:17 Download gff for
BO06003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 1671..2471 | 13..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:54:17 Download gff for
BO06003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23704421..23705221 | 13..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:23 Download gff for
BO06003.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19591944..19592744 | 13..813 | 99 | | Minus |
BO06003.5prime Sequence
886 bp (814 high quality bases) assembled on 2005-12-02
> BO06003.5prime
GAAGTTATCAGTCGACATGAACATTTACAACAAGTTGCGGGCCAGGGAGC
ATGGCTACGGCAATGAGAGGACCTACGACTTCGCCCTGCGCCGCCTTTCC
GTGGCCAAGGAGGACAGCTGGCGGGGCATCGCGCCGGCCAACTACTGCCC
AGACTTCAATCCGGAACCGCCGATCTTCTCCGCCAAGTTCGCCAACTGCG
ATGGCTATCGGCACATCCTGGCGATCGCCAACGAGGACGGCAAGATCACG
CTGCAGGACACCACCCAGCGCAACCACCAGCCGGAGGAGCAGTCCCTGGT
GGGCCCGCAGTGCCACTTCAACGCCGTTTTCGATCTGGAATGGGCACCCG
GCCAGATGCGCTTCGTCTCCGCCTCGGGCGATCACACTGCCAGACTGTGG
GAGGTGGCGGGCTCCGGCATACGCGGCCTGAACTCCTATGTGGGTCACAC
AAGGTCCGTCAAGTCGGCGGCCTTTAAGCGCACCGATCCCGCTGTCTTCG
CCACCGGCGGCCGTGATGGCGCCATTCTCATCTGGGACATCAGGGCCAAT
CTCAATATGGACCTCACGTCACGCGTGGACAACTGCATCTACAGCGGTCA
CACGGGCGGACCGGGCACGCCAGTCTCACAGCGCAAGCAGCGCACACGCA
CTCCCAAGATGGCCGGAGGAACCACCTCGAGCAGCATCACTGGCTTGGCC
TTCCAGGACAACGATACGTTGATCTCCTGTGGTGCCGGTGACGGAGTCAT
CAAGGTGTGGGACCTGCGGCGCAACTACACAGCCCTACAAAAGGAGCCAC
TGCCCAGGCACAAGCTGGCATATGCCGGCAGCTCACCTTTCGTGGATTCA
CCAACCTCATTGTGGACGCGTCAGGCACGAGGCTGT
BO06003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11295-PA | 2310 | l(2)dtl-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG11295-PA | 2310 | l(2)dtl-RA | 819..871 | 834..886 | 240 | 98.1 | Plus |
| CG11295-PA | 2310 | l(2)dtl-RA | 773..818 | 789..834 | 205 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2653 | CG11295-RA | 159..1029 | 17..886 | 4255 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23702951..23703779 | 59..886 | 4005 | 99.2 | Plus |
| 2R | 25286936 | 2R | 23702635..23702678 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:48:43 has no hits.
BO06003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:00 Download gff for
BO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:46 Download gff for
BO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11295-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:34 Download gff for
BO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 151..1029 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:12 Download gff for
BO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 151..1029 | 10..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:12 Download gff for
BO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23702627..23702677 | 10..59 | 94 | -> | Plus |
| 2R | 23702952..23703779 | 60..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:34 Download gff for
BO06003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19590150..19590200 | 10..59 | 94 | -> | Plus |
| arm_2R | 19590475..19591302 | 60..886 | 99 | | Plus |
BO06003.complete Sequence
2341 bp (2341 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630215
> BO06003.complete
GAAGTTATCAGTCGACATGAACATTTACAACAAGTTGCGGGCCAGGGAGC
ATGGCTACGGCAATGAGAGGACCTACGACTTCGCCCTGCGCCGCCTTTCC
GTGGCCAAGGAGGACAGCTGGCGGGGCATCGCGCCGGCCAACTACTGCCC
AGACTTCAATCCGGAACCGCCGATCTTCTCCGCCAAGTTCGCCAACTGCG
ATGGCTATCGGCACATCCTGGCGATCGCCAACGAGGACGGCAAGATCACG
CTGCAGGACACCACCCAGCGCAACCACCAGCCGGAGGAGCAGTCCCTGGT
GGGCCCGCAGTGCCACTTCAACGCCGTTTTCGATCTGGAATGGGCACCCG
GCCAGATGCGCTTCGTCTCCGCCTCGGGCGATCACACTGCCAGACTGTGG
GAGGTGGCGGGCTCCGGCATACGCGGCCTGAACTCCTATGTGGGTCACAC
AAGGTCCGTCAAGTCGGCGGCCTTTAAGCGCACCGATCCCGCTGTCTTCG
CCACCGGCGGCCGTGATGGCGCCATTCTCATCTGGGACATCAGGGCCAAT
CTCAATATGGACCTCACGTCACGCGTGGACAACTGCATCTACAGCGGTCA
CACGGGCGGACCGGGCACGCCAGTCTCACAGCGCAAGCAGCGCACACGCA
CTCCCAAGATGGCCGGAGGAACCACCTCGAGCAGCATCACTGGCTTGGCC
TTCCAGGACAACGATACGTTGATCTCCTGTGGTGCCGGTGACGGAGTCAT
CAAGGTGTGGGACCTGCGGCGCAACTACACAGCCTACAAAAAGGAGCCAC
TGCCCAGGCACAAGCTGCCATATGCCGGCAGCTCCACCTTCCGTGGATTC
ACCAACCTCATTGTGGACGCGTCAGGCACGAGGCTGTATGCCAACTGCAT
GGACAACACCATCTATTGCTACAATCTGGCCTCCTACTCGCAGCGCCCGC
TGGCGTGCTACAAGGGACTCCTTAACTCCACGTTCTACATCAAATCCTGC
CTCAGCCCGGACGGCAAGTATCTGCTGAGCGGAAGCAGCGACGAGCGGGC
TTACATCTGGAACCTGGACCACGCCGAGGAGCCGCTCGTTGCACTGGCCG
GACACACGGTGGAGGTAACCTGCGTGGCCTGGGGCTCCAGCCACGATTGC
CCCATTGTCACGTGCAGCGATGATGCGCGTCACAAAATCTGGCGGATTGG
ACCCGACCTGGATGGCCTCAGCGAGGCGGAGCGGGCGGAAAAGTACCGAG
GAACTGCCTCCTACGTCAGGGAGTTCGGCAAGAAGGCATTTGGTCCGTCT
AGTGGAAATCACAAGTACAATCTTCGAGATCTGGAGTCCACGCCAAGATC
TCTGAAGCGCCTTATGGATCAAAATGAAAGGACGCCAGGTTCCGTGGAAA
AGACGACGACCAAGCGTTCGTTCCTGGAAATGCTGGGCGTAGCTGGCCAG
GAGACGGAAGCCACAGAACAGCCCCAGAAACGGGCGAAGCCACTGGAGTC
ACGTGGAAGGCGGCTCTTTGGACCTTCTAGCCAGGAAACTGCTTGCAGGC
ACATACAACTTCAGTCCATAAACGAGGAAGATGCCTCGCCGAGCAAGAGA
CAAAAGGAGAACTCTGCCGCGGAGGATGTCTCACCACTGCACAAGCTTCT
CAGCACACCAAGTCATTCCCCTTTGAGTGAGAATGTCAACCATGTGTACA
CCTCCCCGCCAACCACGTCAGCGGCAGCAGCAGCGGTGGCTGCAGACGCG
CTTAATCCGCCGCCGATCTCCGCTGCCATCTACTCGCCCACCTCCAACCT
GCCCAATTACGTGCTGGATGGCGAGGCACCGCACCTGGGCATCATGTCGC
CCAAGCGGAAGGCGAAGGAGAAGGTGGACTGGCTGACGAATATCCGCAAA
CAGAAGCTGATGAGTGGCAGGGCCCATGTGACGCTCAGCGAAAAGATCAG
CGAGGAGCAGCAGGCCGATGTGCTGGCATCCCCGCGCCTCCAGAGTCTGC
GGCAGTCAGAGTGCAGTCCCAGGATACACGCCTCGCCCCGCAGACGCATC
TCCCATACGGACGGAGGCGGTGGCACGCCGGCTGGCAGCTCCTCGCACTC
CCATTCCCAATCCCAGCCAAAAACGCCCACTTCCAGTAGGCGAAACAGCG
AGACGACGCTCCTGCGATTCTTTAGCATTCAGAGAAGTAGCAGTGTGCCG
GCGGAGGAAACAACGACAACGAATGCGGCTCCCTCCTCTTCTGATCCCCA
TCCCCCGGCAGTGACTGCGCCCGCAGCCACGCCCCTCAGCATGCGCACGC
CCACGACGGCGGTGGGCAGCGATGCAAGCTTTCTAGACCAT
BO06003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2310 | CG11295-PA | 1..2307 | 17..2323 | 11535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-RA | 2653 | CG11295-RA | 159..2465 | 17..2323 | 11535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23702951..23705215 | 59..2323 | 11325 | 100 | Plus |
| 2R | 25286936 | 2R | 23702635..23702678 | 17..60 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:42 has no hits.
BO06003.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:32 Download gff for
BO06003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 1..2310 | 17..2326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:06 Download gff for
BO06003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 149..2469 | 10..2329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:05 Download gff for
BO06003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 159..2465 | 17..2325 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:32 Download gff for
BO06003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 149..2469 | 10..2329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:31 Download gff for
BO06003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)dtl-RA | 159..2465 | 17..2325 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:31 Download gff for
BO06003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23702635..23702677 | 17..59 | 100 | -> | Plus |
| 2R | 23702952..23705215 | 60..2325 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:05 Download gff for
BO06003.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19590158..19590200 | 17..59 | 100 | -> | Plus |
| arm_2R | 19590475..19592738 | 60..2325 | 99 | | Plus |
BO06003.pep Sequence
Translation from 16 to 2341
> BO06003.pep
MNIYNKLRAREHGYGNERTYDFALRRLSVAKEDSWRGIAPANYCPDFNPE
PPIFSAKFANCDGYRHILAIANEDGKITLQDTTQRNHQPEEQSLVGPQCH
FNAVFDLEWAPGQMRFVSASGDHTARLWEVAGSGIRGLNSYVGHTRSVKS
AAFKRTDPAVFATGGRDGAILIWDIRANLNMDLTSRVDNCIYSGHTGGPG
TPVSQRKQRTRTPKMAGGTTSSSITGLAFQDNDTLISCGAGDGVIKVWDL
RRNYTAYKKEPLPRHKLPYAGSSTFRGFTNLIVDASGTRLYANCMDNTIY
CYNLASYSQRPLACYKGLLNSTFYIKSCLSPDGKYLLSGSSDERAYIWNL
DHAEEPLVALAGHTVEVTCVAWGSSHDCPIVTCSDDARHKIWRIGPDLDG
LSEAERAEKYRGTASYVREFGKKAFGPSSGNHKYNLRDLESTPRSLKRLM
DQNERTPGSVEKTTTKRSFLEMLGVAGQETEATEQPQKRAKPLESRGRRL
FGPSSQETACRHIQLQSINEEDASPSKRQKENSAAEDVSPLHKLLSTPSH
SPLSENVNHVYTSPPTTSAAAAAVAADALNPPPISAAIYSPTSNLPNYVL
DGEAPHLGIMSPKRKAKEKVDWLTNIRKQKLMSGRAHVTLSEKISEEQQA
DVLASPRLQSLRQSECSPRIHASPRRRISHTDGGGGTPAGSSSHSHSQSQ
PKTPTSSRRNSETTLLRFFSIQRSSSVPAEETTTTNAAPSSSDPHPPAVT
APAATPLSMRTPTTAVGSDASFLDH
BO06003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)dtl-PA | 769 | CG11295-PA | 1..769 | 1..769 | 4050 | 100 | Plus |
| CG7611-PJ | 630 | CG7611-PJ | 525..623 | 315..415 | 163 | 36.3 | Plus |
| CG7611-PI | 630 | CG7611-PI | 525..623 | 315..415 | 163 | 36.3 | Plus |
| CG7611-PA | 630 | CG7611-PA | 525..623 | 315..415 | 163 | 36.3 | Plus |
| CG7611-PD | 630 | CG7611-PD | 525..623 | 315..415 | 163 | 36.3 | Plus |
