Clone Sequence Records
BO06005.3prime Sequence
890 bp (754 high quality bases) assembled on 2005-12-02
> BO06005.3prime
ATGGTCTAGAAAGCTTGCGCTGCAGCAGCTGGCCGGCGTGGGGTCCAGTC
CGGAGCGCTTGGTGATGGCCAGCCGGGTGAATTCTTCGGCGGTAGTGGGA
TGGATGCCCACGGTGTTGATCAGCGTGTTAATAGTCAGGCCAGACTTCAA
AGCGGCAGCGAATCCCTGGATAACCTCACCGGCCACCGGGCCAATATAGT
GCAGTCCATAGACGCGCTGGTCACCATGGCGCTCGGCCACAGCCTTCAAG
TAGCAGTAGCGCACGCTCTTCTGGGGAATGAAGAACTCCGTGGGCTTGTA
GTAGCCGTGGAACACCTCGATCTCATCGGCTCCGAACTGCTTGACGGCAT
CCTCCTCGCTCAGGCCGACGCAGGCGTACTCCAGGGGCGTGAAAACGGTG
GTGGCCACATCCTTGTAGTCCATGCGCTGGGTAGATCCTCCGTACAGGCG
GCGGGCCAGCAAACGGCCAGCCAAAACGGCGACGGGCGTCAGCTCTGGCT
TGCCATAGATGATATCGCCGACAGCGTAGATGTTTGCCACATTGGTAGCC
TCCTGGGAGTCCACTGGAATCTTGTCCTTCTGCACAGTCACGCCGGCATT
GGGCAGGTTCAGATCGTCCACCAGACCCTTGCGGCCGATGGCCCACAGAA
CGGTGTCGTAAACATCCTCGGCCTCCTCGCCGGTCTCCACGTTCTTGTAC
TTCACGAGCAGCTTGCCATCATCCTGCTTTTCCACGGACAGCGGCACCGT
CTTGCGGAGGAAGGGAATGCCACGCTCCTCCATCGAGGCTGCCACCAGCT
CGGCCATCTGCTGGTCGAAGCCACGCAGCACAATAGAACGCACCATCACA
GTGGGCTCGTAGCCGAGACCCTTCAGGAATCCAGCGCACT
BO06005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2151-PA | 1476 | Trxr-1-RA | 602..1473 | 890..19 | 4360 | 100 | Minus |
CG2151-PB | 1791 | Trxr-1-RB | 917..1788 | 890..19 | 4360 | 100 | Minus |
CG2151-PC | 1527 | Trxr-1-RC | 653..1524 | 890..19 | 4360 | 100 | Minus |
CG11401-PA | 1551 | Trxr-2-RA | 1246..1307 | 321..260 | 235 | 95.1 | Minus |
CG11401-PA | 1551 | Trxr-2-RA | 688..752 | 879..815 | 200 | 92.3 | Minus |
CG11401-PA | 1551 | Trxr-2-RA | 1450..1511 | 117..56 | 135 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-1-RC | 2108 | CG2151-RC | 895..1766 | 890..19 | 4360 | 100 | Minus |
Trxr-1-RB | 2277 | CG2151-RB | 1064..1935 | 890..19 | 4360 | 100 | Minus |
Trxr-1-RA | 2003 | CG2151-RA | 790..1661 | 890..19 | 4360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8246820..8247691 | 890..19 | 4360 | 100 | Minus |
3L | 28110227 | 3L | 22550997..22551867 | 890..20 | 830 | 73 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:14:57 has no hits.
BO06005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:03 Download gff for
BO06005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PC | 653..1527 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:50 Download gff for
BO06005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PC | 653..1527 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:29 Download gff for
BO06005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 790..1667 | 13..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:19 Download gff for
BO06005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 790..1667 | 13..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:19 Download gff for
BO06005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8246820..8247697 | 13..890 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:29 Download gff for
BO06005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8140853..8141730 | 13..890 | 99 | | Minus |
BO06005.5prime Sequence
821 bp (752 high quality bases) assembled on 2005-12-02
> BO06005.5prime
GAAGTTATCAGTCGACATGGCGCCCGTGCAAGGATCCTACGACTACGACC
TTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCA
GTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCC
CACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCT
GCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTC
CATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGA
CTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACT
GGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGA
CTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGG
CGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGAC
CACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGAT
GATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGC
TGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACG
AGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAG
ATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCT
CCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCANGATGATGGCAAGCTGC
TCGTGAAGTACAAGAACGTGG
BO06005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2151-PA | 1476 | Trxr-1-RA | 1..805 | 17..821 | 4006 | 99.8 | Plus |
CG2151-PB | 1791 | Trxr-1-RB | 330..1120 | 31..821 | 3936 | 99.8 | Plus |
CG2151-PC | 1527 | Trxr-1-RC | 67..856 | 32..821 | 3931 | 99.8 | Plus |
CG32715-PA | 183 | CG32715-RA | 1..183 | 253..71 | 915 | 100 | Minus |
CG11401-PA | 1551 | Trxr-2-RA | 206..326 | 156..276 | 330 | 90.9 | Plus |
CG11401-PA | 1551 | Trxr-2-RA | 373..444 | 320..391 | 235 | 93 | Plus |
CG11401-PA | 1551 | Trxr-2-RA | 688..752 | 629..693 | 200 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-1-RA | 2003 | CG2151-RA | 189..993 | 17..821 | 4014 | 99.9 | Plus |
Trxr-1-RB | 2277 | CG2151-RB | 477..1267 | 31..821 | 3944 | 99.9 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 309..1098 | 32..821 | 3939 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8246092..8246446 | 31..385 | 1760 | 99.7 | Plus |
X | 23542271 | X | 8246510..8246736 | 379..605 | 1135 | 100 | Plus |
X | 23542271 | X | 8246808..8247023 | 606..821 | 1069 | 99.5 | Plus |
3L | 28110227 | 3L | 22550410..22550764 | 37..391 | 715 | 81.3 | Plus |
3L | 28110227 | 3L | 22550864..22551129 | 485..750 | 490 | 78.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:48:54 has no hits.
BO06005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:04 Download gff for
BO06005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:51 Download gff for
BO06005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2151-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:36 Download gff for
BO06005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 189..993 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:54 Download gff for
BO06005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 189..993 | 17..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:54 Download gff for
BO06005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8246510..8246736 | 379..605 | 100 | -> | Plus |
X | 8246808..8247023 | 606..821 | 99 | | Plus |
X | 8242716..8242731 | 17..32 | 100 | -> | Plus |
X | 8246094..8246439 | 33..378 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:36 Download gff for
BO06005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8136749..8136764 | 17..32 | 100 | -> | Plus |
arm_X | 8140127..8140472 | 33..378 | 100 | -> | Plus |
arm_X | 8140543..8140769 | 379..605 | 100 | -> | Plus |
arm_X | 8140841..8141056 | 606..821 | 99 | | Plus |
BO06005.complete Sequence
1507 bp (1507 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630217
> BO06005.complete
GAAGTTATCAGTCGACATGGCGCCCGTGCAAGGATCCTACGACTACGACC
TTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCA
GTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCC
CACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCT
GCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTC
CATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGA
CTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACT
GGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGA
CTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGG
CGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGAC
CACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGAT
GATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGC
TGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACG
AGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAG
ATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCT
CCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGC
TCGTGAAGTACAAGAACGTGGAGACCGGCGAGGAGGCCGAGGATGTTTAC
GACACCGTTCTGTGGGCCATCGGCCGCAAGGGTCTGGTGGACGATCTGAA
CCTGCCCAATGCCGGCGTGACTGTGCAGAAGGACAAGATTCCAGTGGACT
CCCAGGAGGCTACCAATGTGGCAAACATCTACGCTGTCGGCGATATCATC
TATGGCAAGCCAGAGCTGACGCCCGTCGCCGTTTTGGCTGGCCGTTTGCT
GGCCCGCCGCCTGTACGGAGGATCTACCCAGCGCATGGACTACAAGGATG
TGGCCACCACCGTTTTCACGCCCCTGGAGTACGCCTGCGTCGGCCTGAGC
GAGGAGGATGCCGTCAAGCAGTTCGGAGCCGATGAGATCGAGGTGTTCCA
CGGCTACTACAAGCCCACGGAGTTCTTCATTCCCCAGAAGAGCGTGCGCT
ACTGCTACTTGAAGGCTGTGGCCGAGCGCCATGGTGACCAGCGCGTCTAT
GGACTGCACTATATTGGCCCGGTGGCCGGTGAGGTTATCCAGGGATTCGC
TGCCGCTTTGAAGTCTGGCCTGACTATTAACACGCTGATCAACACCGTGG
GCATCCATCCCACTACCGCCGAAGAATTCACCCGGCTGGCCATCACCAAG
CGCTCCGGACTGGACCCCACGCCGGCCAGCTGCTGCAGCGCAAGCTTTCT
AGACCAT
BO06005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-1-RA | 1476 | CG2151-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Trxr-1-RB | 1791 | CG2151-PB | 330..1788 | 31..1489 | 7295 | 100 | Plus |
Trxr-1-RC | 1527 | CG2151-PC | 67..1524 | 32..1489 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-1-RA | 2003 | CG2151-RA | 189..1661 | 17..1489 | 7365 | 100 | Plus |
Trxr-1-RB | 2277 | CG2151-RB | 477..1935 | 31..1489 | 7295 | 100 | Plus |
Trxr-1-RC | 2108 | CG2151-RC | 309..1766 | 32..1489 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8246808..8247691 | 606..1489 | 4420 | 100 | Plus |
X | 23542271 | X | 8246092..8246446 | 31..385 | 1760 | 99.7 | Plus |
X | 23542271 | X | 8246510..8246736 | 379..605 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 22550864..22551867 | 485..1488 | 955 | 73 | Plus |
3L | 28110227 | 3L | 22550410..22550764 | 37..391 | 715 | 81.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:22 has no hits.
BO06005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:07 Download gff for
BO06005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 1..1476 | 17..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:53 Download gff for
BO06005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 233..1711 | 17..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:35 Download gff for
BO06005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 189..1661 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:07 Download gff for
BO06005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 233..1711 | 17..1495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:32 Download gff for
BO06005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trxr-1-RA | 189..1661 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:32 Download gff for
BO06005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8242716..8242731 | 17..32 | 100 | -> | Plus |
X | 8246094..8246439 | 33..378 | 100 | -> | Plus |
X | 8246510..8246736 | 379..605 | 100 | -> | Plus |
X | 8246808..8247691 | 606..1491 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:35 Download gff for
BO06005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8136749..8136764 | 17..32 | 100 | -> | Plus |
arm_X | 8140127..8140472 | 33..378 | 100 | -> | Plus |
arm_X | 8140543..8140769 | 379..605 | 100 | -> | Plus |
arm_X | 8140841..8141724 | 606..1491 | 99 | | Plus |
BO06005.pep Sequence
Translation from 16 to 1507
> BO06005.pep
MAPVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTK
WGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLV
QSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTIT
AQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGL
ECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVP
LSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAG
VTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLY
GGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKP
TEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKS
GLTINTLINTVGIHPTTAEEFTRLAITKRSGLDPTPASCCSASFLDH
BO06005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trxr-1-PA | 491 | CG2151-PA | 1..491 | 1..491 | 2556 | 100 | Plus |
Trxr-1-PB | 596 | CG2151-PB | 106..596 | 1..491 | 2532 | 99.2 | Plus |
Trxr-1-PC | 508 | CG2151-PC | 23..508 | 6..491 | 2531 | 100 | Plus |
Trxr-2-PA | 516 | CG11401-PA | 24..516 | 1..491 | 1980 | 75.9 | Plus |
CG7430-PB | 504 | CG7430-PB | 35..487 | 7..469 | 389 | 28.1 | Plus |