Clone BO06005 Report

Search the DGRC for BO06005

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptTrxr-1-RA
Protein status:BO06005.pep: validated full length
Sequenced Size:1507

Clone Sequence Records

BO06005.3prime Sequence

890 bp (754 high quality bases) assembled on 2005-12-02

> BO06005.3prime
ATGGTCTAGAAAGCTTGCGCTGCAGCAGCTGGCCGGCGTGGGGTCCAGTC
CGGAGCGCTTGGTGATGGCCAGCCGGGTGAATTCTTCGGCGGTAGTGGGA
TGGATGCCCACGGTGTTGATCAGCGTGTTAATAGTCAGGCCAGACTTCAA
AGCGGCAGCGAATCCCTGGATAACCTCACCGGCCACCGGGCCAATATAGT
GCAGTCCATAGACGCGCTGGTCACCATGGCGCTCGGCCACAGCCTTCAAG
TAGCAGTAGCGCACGCTCTTCTGGGGAATGAAGAACTCCGTGGGCTTGTA
GTAGCCGTGGAACACCTCGATCTCATCGGCTCCGAACTGCTTGACGGCAT
CCTCCTCGCTCAGGCCGACGCAGGCGTACTCCAGGGGCGTGAAAACGGTG
GTGGCCACATCCTTGTAGTCCATGCGCTGGGTAGATCCTCCGTACAGGCG
GCGGGCCAGCAAACGGCCAGCCAAAACGGCGACGGGCGTCAGCTCTGGCT
TGCCATAGATGATATCGCCGACAGCGTAGATGTTTGCCACATTGGTAGCC
TCCTGGGAGTCCACTGGAATCTTGTCCTTCTGCACAGTCACGCCGGCATT
GGGCAGGTTCAGATCGTCCACCAGACCCTTGCGGCCGATGGCCCACAGAA
CGGTGTCGTAAACATCCTCGGCCTCCTCGCCGGTCTCCACGTTCTTGTAC
TTCACGAGCAGCTTGCCATCATCCTGCTTTTCCACGGACAGCGGCACCGT
CTTGCGGAGGAAGGGAATGCCACGCTCCTCCATCGAGGCTGCCACCAGCT
CGGCCATCTGCTGGTCGAAGCCACGCAGCACAATAGAACGCACCATCACA
GTGGGCTCGTAGCCGAGACCCTTCAGGAATCCAGCGCACT

BO06005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2151-PA 1476 Trxr-1-RA 602..1473 890..19 4360 100 Minus
CG2151-PB 1791 Trxr-1-RB 917..1788 890..19 4360 100 Minus
CG2151-PC 1527 Trxr-1-RC 653..1524 890..19 4360 100 Minus
CG11401-PA 1551 Trxr-2-RA 1246..1307 321..260 235 95.1 Minus
CG11401-PA 1551 Trxr-2-RA 688..752 879..815 200 92.3 Minus
CG11401-PA 1551 Trxr-2-RA 1450..1511 117..56 135 88.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RC 2108 CG2151-RC 895..1766 890..19 4360 100 Minus
Trxr-1-RB 2277 CG2151-RB 1064..1935 890..19 4360 100 Minus
Trxr-1-RA 2003 CG2151-RA 790..1661 890..19 4360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246820..8247691 890..19 4360 100 Minus
3L 28110227 3L 22550997..22551867 890..20 830 73 Minus
Blast to na_te.dros performed on 2015-02-11 22:14:57 has no hits.

BO06005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:03 Download gff for BO06005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PC 653..1527 15..890 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:50 Download gff for BO06005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PC 653..1527 15..890 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:29 Download gff for BO06005.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 790..1667 13..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:19 Download gff for BO06005.3prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 790..1667 13..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:19 Download gff for BO06005.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8246820..8247697 13..890 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:29 Download gff for BO06005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8140853..8141730 13..890 99   Minus

BO06005.5prime Sequence

821 bp (752 high quality bases) assembled on 2005-12-02

> BO06005.5prime
GAAGTTATCAGTCGACATGGCGCCCGTGCAAGGATCCTACGACTACGACC
TTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCA
GTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCC
CACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCT
GCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTC
CATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGA
CTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACT
GGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGA
CTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGG
CGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGAC
CACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGAT
GATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGC
TGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACG
AGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAG
ATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCT
CCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCANGATGATGGCAAGCTGC
TCGTGAAGTACAAGAACGTGG

BO06005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2151-PA 1476 Trxr-1-RA 1..805 17..821 4006 99.8 Plus
CG2151-PB 1791 Trxr-1-RB 330..1120 31..821 3936 99.8 Plus
CG2151-PC 1527 Trxr-1-RC 67..856 32..821 3931 99.8 Plus
CG32715-PA 183 CG32715-RA 1..183 253..71 915 100 Minus
CG11401-PA 1551 Trxr-2-RA 206..326 156..276 330 90.9 Plus
CG11401-PA 1551 Trxr-2-RA 373..444 320..391 235 93 Plus
CG11401-PA 1551 Trxr-2-RA 688..752 629..693 200 92.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 2003 CG2151-RA 189..993 17..821 4014 99.9 Plus
Trxr-1-RB 2277 CG2151-RB 477..1267 31..821 3944 99.9 Plus
Trxr-1-RC 2108 CG2151-RC 309..1098 32..821 3939 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246092..8246446 31..385 1760 99.7 Plus
X 23542271 X 8246510..8246736 379..605 1135 100 Plus
X 23542271 X 8246808..8247023 606..821 1069 99.5 Plus
3L 28110227 3L 22550410..22550764 37..391 715 81.3 Plus
3L 28110227 3L 22550864..22551129 485..750 490 78.9 Plus
Blast to na_te.dros performed on 2015-02-13 00:48:54 has no hits.

BO06005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:04 Download gff for BO06005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:51 Download gff for BO06005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2151-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:36 Download gff for BO06005.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..993 17..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:54 Download gff for BO06005.5prime
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..993 17..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:54 Download gff for BO06005.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8246510..8246736 379..605 100 -> Plus
X 8246808..8247023 606..821 99   Plus
X 8242716..8242731 17..32 100 -> Plus
X 8246094..8246439 33..378 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:36 Download gff for BO06005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8136749..8136764 17..32 100 -> Plus
arm_X 8140127..8140472 33..378 100 -> Plus
arm_X 8140543..8140769 379..605 100 -> Plus
arm_X 8140841..8141056 606..821 99   Plus

BO06005.complete Sequence

1507 bp (1507 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630217

> BO06005.complete
GAAGTTATCAGTCGACATGGCGCCCGTGCAAGGATCCTACGACTACGACC
TTATTGTGATTGGAGGCGGCTCAGCTGGCCTGGCCTGCGCCAAGGAGGCA
GTCCTCAATGGAGCCCGTGTGGCCTGTCTGGATTTCGTTAAGCCCACGCC
CACTCTGGGCACCAAGTGGGGCGTTGGCGGCACCTGCGTGAACGTGGGCT
GCATTCCCAAGAAGCTGATGCACCAGGCCTCCCTTCTGGGCGAGGCTGTC
CATGAGGCGGCCGCCTACGGCTGGAACGTGGACGAAAAGATCAAGCCAGA
CTGGCACAAGCTGGTGCAGTCCGTACAGAACCACATCAAGTCCGTCAACT
GGGTGACCCGTGTGGATCTGCGCGACAAGAAAGTGGAGTACATCAATGGA
CTGGGCTCCTTCGTGGACTCGCACACACTGCTGGCCAAGCTGAAGAGCGG
CGAGCGCACAATCACCGCCCAGACCTTCGTCATTGCCGTTGGCGGCCGAC
CACGTTATCCGGATATTCCCGGTGCTGTCGAGTATGGCATCACCAGCGAT
GATCTGTTCAGTTTGGACCGCGAGCCCGGCAAGACCCTGGTGGTGGGAGC
TGGCTACATTGGCTTGGAGTGCGCTGGATTCCTGAAGGGTCTCGGCTACG
AGCCCACTGTGATGGTGCGTTCTATTGTGCTGCGTGGCTTCGACCAGCAG
ATGGCCGAGCTGGTGGCAGCCTCGATGGAGGAGCGTGGCATTCCCTTCCT
CCGCAAGACGGTGCCGCTGTCCGTGGAAAAGCAGGATGATGGCAAGCTGC
TCGTGAAGTACAAGAACGTGGAGACCGGCGAGGAGGCCGAGGATGTTTAC
GACACCGTTCTGTGGGCCATCGGCCGCAAGGGTCTGGTGGACGATCTGAA
CCTGCCCAATGCCGGCGTGACTGTGCAGAAGGACAAGATTCCAGTGGACT
CCCAGGAGGCTACCAATGTGGCAAACATCTACGCTGTCGGCGATATCATC
TATGGCAAGCCAGAGCTGACGCCCGTCGCCGTTTTGGCTGGCCGTTTGCT
GGCCCGCCGCCTGTACGGAGGATCTACCCAGCGCATGGACTACAAGGATG
TGGCCACCACCGTTTTCACGCCCCTGGAGTACGCCTGCGTCGGCCTGAGC
GAGGAGGATGCCGTCAAGCAGTTCGGAGCCGATGAGATCGAGGTGTTCCA
CGGCTACTACAAGCCCACGGAGTTCTTCATTCCCCAGAAGAGCGTGCGCT
ACTGCTACTTGAAGGCTGTGGCCGAGCGCCATGGTGACCAGCGCGTCTAT
GGACTGCACTATATTGGCCCGGTGGCCGGTGAGGTTATCCAGGGATTCGC
TGCCGCTTTGAAGTCTGGCCTGACTATTAACACGCTGATCAACACCGTGG
GCATCCATCCCACTACCGCCGAAGAATTCACCCGGCTGGCCATCACCAAG
CGCTCCGGACTGGACCCCACGCCGGCCAGCTGCTGCAGCGCAAGCTTTCT
AGACCAT

BO06005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 1476 CG2151-PA 1..1473 17..1489 7365 100 Plus
Trxr-1-RB 1791 CG2151-PB 330..1788 31..1489 7295 100 Plus
Trxr-1-RC 1527 CG2151-PC 67..1524 32..1489 7290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-RA 2003 CG2151-RA 189..1661 17..1489 7365 100 Plus
Trxr-1-RB 2277 CG2151-RB 477..1935 31..1489 7295 100 Plus
Trxr-1-RC 2108 CG2151-RC 309..1766 32..1489 7290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8246808..8247691 606..1489 4420 100 Plus
X 23542271 X 8246092..8246446 31..385 1760 99.7 Plus
X 23542271 X 8246510..8246736 379..605 1135 100 Plus
3L 28110227 3L 22550864..22551867 485..1488 955 73 Plus
3L 28110227 3L 22550410..22550764 37..391 715 81.3 Plus
Blast to na_te.dros performed on 2014-11-28 00:33:22 has no hits.

BO06005.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:07 Download gff for BO06005.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 1..1476 17..1493 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:53 Download gff for BO06005.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 233..1711 17..1495 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:35 Download gff for BO06005.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1661 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:07 Download gff for BO06005.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 233..1711 17..1495 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:32 Download gff for BO06005.complete
Subject Subject Range Query Range Percent Splice Strand
Trxr-1-RA 189..1661 17..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:32 Download gff for BO06005.complete
Subject Subject Range Query Range Percent Splice Strand
X 8242716..8242731 17..32 100 -> Plus
X 8246094..8246439 33..378 100 -> Plus
X 8246510..8246736 379..605 100 -> Plus
X 8246808..8247691 606..1491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:35 Download gff for BO06005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8136749..8136764 17..32 100 -> Plus
arm_X 8140127..8140472 33..378 100 -> Plus
arm_X 8140543..8140769 379..605 100 -> Plus
arm_X 8140841..8141724 606..1491 99   Plus

BO06005.pep Sequence

Translation from 16 to 1507

> BO06005.pep
MAPVQGSYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTK
WGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLV
QSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTIT
AQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGL
ECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVP
LSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGRKGLVDDLNLPNAG
VTVQKDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLY
GGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKP
TEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKS
GLTINTLINTVGIHPTTAEEFTRLAITKRSGLDPTPASCCSASFLDH

BO06005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
Trxr-1-PA 491 CG2151-PA 1..491 1..491 2556 100 Plus
Trxr-1-PB 596 CG2151-PB 106..596 1..491 2532 99.2 Plus
Trxr-1-PC 508 CG2151-PC 23..508 6..491 2531 100 Plus
Trxr-2-PA 516 CG11401-PA 24..516 1..491 1980 75.9 Plus
CG7430-PB 504 CG7430-PB 35..487 7..469 389 28.1 Plus