Clone BO06006 Report

Search the DGRC for BO06006

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG5171-RA
Protein status:BO06006.pep: validated full length
Sequenced Size:853

Clone Sequence Records

BO06006.3prime Sequence

759 bp (758 high quality bases) assembled on 2005-12-02

> BO06006.3prime
ATGGTCTAGAAAGCTTGCAGAAACATACACATTGGCTATCCATTTGAGAA
GATCGGTCATTACAGCCTGCTTGGGCAACCGGAAATCCGCATAAGTTTGA
ATCTGGGCATCAGCAGAAATTCTAAACGAGCGACCCAAGCCTCGAAGCAC
TCTCATGGCATCTTCATCGGTGGTGTCATCGCCCGCAAAGACCACACTCA
CTTTCTGCGACCAATTATCCCCGAATTTCTGCTTCAGAATATACACGGCA
GCCTCTCCCTTGTTCCAATTCACTGGGGGCTTAGCTTCGATGGCTTCATG
GGCCTGATTCGCACGGAATCCGAACTTTGTGCAGATCTCCGAAGCCAACT
GCTTTTGCTGATCCTTCAGGGCTGCGGGCGTATCTCTGTAGTGGTAGGTG
AGTGACACCTTCTTATCCTCCACCCAGGCTCCATTCTTCTCCACCTTCTC
CTTGAGCTCCCTAACCATTTGTGTGTAGTTTTTCTGGATCTCCGTGGGTA
GCTCGTAATCGTGCCTGGAGCCATCGGGATACTCGATTTCCAGTCCATGA
TTACCAGCATATGTAATGCCATCGATATTTACTTGTTTTTGCACATCTTT
CAGTCCGCGACCCGAGATCACAGCGAGAAAAACTTTGGGATGCTTGGCTA
TCTTGTGCAGTATGGCCTCCAGTTCCACGGGCATTTTGGTCTTCGCTGGA
TTATCCGCAATGGGAGCTAGGGTGCCATCGTAGTCCAGGAGTACGGCAAC
TGGACTTTC

BO06006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PB 822 CG5171-RB 79..819 759..19 3705 100 Minus
CG5171-PA 822 CG5171-RA 79..819 759..19 3705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 277..1017 759..19 3705 100 Minus
CG5171-RE 1137 CG5171-RE 232..972 759..19 3705 100 Minus
CG5171-RD 1156 CG5171-RD 251..991 759..19 3705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403555..7404166 759..148 3060 100 Minus
2L 23513712 2L 7404230..7404361 150..19 660 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:00:24 has no hits.

BO06006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:05 Download gff for BO06006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 79..822 18..759 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:53 Download gff for BO06006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 79..822 18..759 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:58 Download gff for BO06006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 227..967 19..759 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:26 Download gff for BO06006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 251..991 19..759 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:26 Download gff for BO06006.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7404230..7404359 21..150 100 <- Minus
2L 7403555..7404163 151..759 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:58 Download gff for BO06006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403555..7404163 151..759 100 -> Minus
arm_2L 7404230..7404359 21..150 100 <- Minus

BO06006.5prime Sequence

849 bp (714 high quality bases) assembled on 2005-12-02

> BO06006.5prime
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGGCTGTAATGACCG
ATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTGCAAGCTTTCTAGA

BO06006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PB 822 CG5171-RB 1..819 17..835 4095 100 Plus
CG5171-PA 822 CG5171-RA 1..819 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 199..1017 17..835 4095 100 Plus
CG5171-RE 1137 CG5171-RE 154..972 17..835 4095 100 Plus
CG5171-RD 1156 CG5171-RD 173..991 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 81..706 3130 100 Plus
2L 23513712 2L 7404230..7404361 704..835 660 100 Plus
2L 23513712 2L 7403297..7403364 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:48:49 has no hits.

BO06006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:06 Download gff for BO06006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..822 17..836 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:55 Download gff for BO06006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-PA 1..822 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:00 Download gff for BO06006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 143..967 11..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:10:13 Download gff for BO06006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 167..991 11..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:10:13 Download gff for BO06006.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7404230..7404361 704..835 100   Plus
2L 7403291..7403361 11..81 95 -> Plus
2L 7403542..7404163 82..703 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:00 Download gff for BO06006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403291..7403361 11..81 95 -> Plus
arm_2L 7403542..7404163 82..703 100 -> Plus
arm_2L 7404230..7404361 704..835 100   Plus

BO06006.complete Sequence

853 bp (853 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630218

> BO06006.complete
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGGCTGTAATGACCG
ATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTGCAAGCTTTCTAGAC
CAT

BO06006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 822 CG5171-PF 1..819 17..835 4095 100 Plus
CG5171-RE 822 CG5171-PE 1..819 17..835 4095 100 Plus
CG5171-RD 891 CG5171-PD 70..888 17..835 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-RF 1182 CG7-RF 199..1017 17..835 4095 100 Plus
CG5171-RE 1137 CG5171-RE 154..972 17..835 4095 100 Plus
CG5171-RD 1156 CG5171-RD 173..991 17..835 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7403541..7404166 81..706 3130 100 Plus
2L 23513712 2L 7404230..7404361 704..835 660 100 Plus
2L 23513712 2L 7403297..7403364 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:02:05 has no hits.

BO06006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:58 Download gff for BO06006.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RC 1..822 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:37 Download gff for BO06006.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RC 149..973 11..835 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:14 Download gff for BO06006.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RA 149..967 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:58 Download gff for BO06006.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RC 149..973 11..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:51 Download gff for BO06006.complete
Subject Subject Range Query Range Percent Splice Strand
CG5171-RD 173..991 17..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:51 Download gff for BO06006.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7403297..7403361 17..81 100 -> Plus
2L 7403542..7404163 82..703 100 -> Plus
2L 7404230..7404361 704..837 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:14 Download gff for BO06006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7403297..7403361 17..81 100 -> Plus
arm_2L 7403542..7404163 82..703 100 -> Plus
arm_2L 7404230..7404361 704..837 98   Plus

BO06006.pep Sequence

Translation from 16 to 853

> BO06006.pep
MPEKQVAPVISNLEDFANNLPGYLISESPVAVLLDYDGTLAPIADNPAKT
KMPVELEAILHKIAKHPKVFLAVISGRGLKDVQKQVNIDGITYAGNHGLE
IEYPDGSRHDYELPTEIQKNYTQMVRELKEKVEKNGAWVEDKKVSLTYHY
RDTPAALKDQQKQLASEICTKFGFRANQAHEAIEAKPPVNWNKGEAAVYI
LKQKFGDNWSQKVSVVFAGDDTTDEDAMRVLRGLGRSFRISADAQIQTYA
DFRLPKQAVMTDLLKWIANVYVSASFLDH

BO06006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5171-PF 273 CG5171-PF 1..273 1..273 1417 100 Plus
CG5171-PE 273 CG5171-PE 1..273 1..273 1417 100 Plus
CG5171-PA 273 CG5171-PA 1..273 1..273 1417 100 Plus
CG5171-PB 273 CG5171-PB 1..273 1..273 1417 100 Plus
CG5171-PD 296 CG5171-PD 24..296 1..273 1417 100 Plus