Clone Sequence Records
BO06006.3prime Sequence
759 bp (758 high quality bases) assembled on 2005-12-02
> BO06006.3prime
ATGGTCTAGAAAGCTTGCAGAAACATACACATTGGCTATCCATTTGAGAA
GATCGGTCATTACAGCCTGCTTGGGCAACCGGAAATCCGCATAAGTTTGA
ATCTGGGCATCAGCAGAAATTCTAAACGAGCGACCCAAGCCTCGAAGCAC
TCTCATGGCATCTTCATCGGTGGTGTCATCGCCCGCAAAGACCACACTCA
CTTTCTGCGACCAATTATCCCCGAATTTCTGCTTCAGAATATACACGGCA
GCCTCTCCCTTGTTCCAATTCACTGGGGGCTTAGCTTCGATGGCTTCATG
GGCCTGATTCGCACGGAATCCGAACTTTGTGCAGATCTCCGAAGCCAACT
GCTTTTGCTGATCCTTCAGGGCTGCGGGCGTATCTCTGTAGTGGTAGGTG
AGTGACACCTTCTTATCCTCCACCCAGGCTCCATTCTTCTCCACCTTCTC
CTTGAGCTCCCTAACCATTTGTGTGTAGTTTTTCTGGATCTCCGTGGGTA
GCTCGTAATCGTGCCTGGAGCCATCGGGATACTCGATTTCCAGTCCATGA
TTACCAGCATATGTAATGCCATCGATATTTACTTGTTTTTGCACATCTTT
CAGTCCGCGACCCGAGATCACAGCGAGAAAAACTTTGGGATGCTTGGCTA
TCTTGTGCAGTATGGCCTCCAGTTCCACGGGCATTTTGGTCTTCGCTGGA
TTATCCGCAATGGGAGCTAGGGTGCCATCGTAGTCCAGGAGTACGGCAAC
TGGACTTTC
BO06006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PB | 822 | CG5171-RB | 79..819 | 759..19 | 3705 | 100 | Minus |
CG5171-PA | 822 | CG5171-RA | 79..819 | 759..19 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 277..1017 | 759..19 | 3705 | 100 | Minus |
CG5171-RE | 1137 | CG5171-RE | 232..972 | 759..19 | 3705 | 100 | Minus |
CG5171-RD | 1156 | CG5171-RD | 251..991 | 759..19 | 3705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403555..7404166 | 759..148 | 3060 | 100 | Minus |
2L | 23513712 | 2L | 7404230..7404361 | 150..19 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:00:24 has no hits.
BO06006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:05 Download gff for
BO06006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 79..822 | 18..759 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:53 Download gff for
BO06006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 79..822 | 18..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:58 Download gff for
BO06006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 227..967 | 19..759 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:26 Download gff for
BO06006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 251..991 | 19..759 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:26 Download gff for
BO06006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7404230..7404359 | 21..150 | 100 | <- | Minus |
2L | 7403555..7404163 | 151..759 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:58 Download gff for
BO06006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403555..7404163 | 151..759 | 100 | -> | Minus |
arm_2L | 7404230..7404359 | 21..150 | 100 | <- | Minus |
BO06006.5prime Sequence
849 bp (714 high quality bases) assembled on 2005-12-02
> BO06006.5prime
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGGCTGTAATGACCG
ATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTGCAAGCTTTCTAGA
BO06006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PB | 822 | CG5171-RB | 1..819 | 17..835 | 4095 | 100 | Plus |
CG5171-PA | 822 | CG5171-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 199..1017 | 17..835 | 4095 | 100 | Plus |
CG5171-RE | 1137 | CG5171-RE | 154..972 | 17..835 | 4095 | 100 | Plus |
CG5171-RD | 1156 | CG5171-RD | 173..991 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 81..706 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404361 | 704..835 | 660 | 100 | Plus |
2L | 23513712 | 2L | 7403297..7403364 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:48:49 has no hits.
BO06006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:06 Download gff for
BO06006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..822 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:55 Download gff for
BO06006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-PA | 1..822 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:00 Download gff for
BO06006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 143..967 | 11..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:10:13 Download gff for
BO06006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 167..991 | 11..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:10:13 Download gff for
BO06006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7404230..7404361 | 704..835 | 100 | | Plus |
2L | 7403291..7403361 | 11..81 | 95 | -> | Plus |
2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:00 Download gff for
BO06006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403291..7403361 | 11..81 | 95 | -> | Plus |
arm_2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
arm_2L | 7404230..7404361 | 704..835 | 100 | | Plus |
BO06006.complete Sequence
853 bp (853 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630218
> BO06006.complete
GAAGTTATCAGTCGACATGCCTGAGAAACAAGTGGCACCTGTAATTAGTA
ATCTCGAGGATTTTGCGAATAATTTACCTGGGTATCTAATTTCTGAAAGT
CCAGTTGCCGTACTCCTGGACTACGATGGCACCCTAGCTCCCATTGCGGA
TAATCCAGCGAAGACCAAAATGCCCGTGGAACTGGAGGCCATACTGCACA
AGATAGCCAAGCATCCCAAAGTTTTTCTCGCTGTGATCTCGGGTCGCGGA
CTGAAAGATGTGCAAAAACAAGTAAATATCGATGGCATTACATATGCTGG
TAATCATGGACTGGAAATCGAGTATCCCGATGGCTCCAGGCACGATTACG
AGCTACCCACGGAGATCCAGAAAAACTACACACAAATGGTTAGGGAGCTC
AAGGAGAAGGTGGAGAAGAATGGAGCCTGGGTGGAGGATAAGAAGGTGTC
ACTCACCTACCACTACAGAGATACGCCCGCAGCCCTGAAGGATCAGCAAA
AGCAGTTGGCTTCGGAGATCTGCACAAAGTTCGGATTCCGTGCGAATCAG
GCCCATGAAGCCATCGAAGCTAAGCCCCCAGTGAATTGGAACAAGGGAGA
GGCTGCCGTGTATATTCTGAAGCAGAAATTCGGGGATAATTGGTCGCAGA
AAGTGAGTGTGGTCTTTGCGGGCGATGACACCACCGATGAAGATGCCATG
AGAGTGCTTCGAGGCTTGGGTCGCTCGTTTAGAATTTCTGCTGATGCCCA
GATTCAAACTTATGCGGATTTCCGGTTGCCCAAGCAGGCTGTAATGACCG
ATCTTCTCAAATGGATAGCCAATGTGTATGTTTCTGCAAGCTTTCTAGAC
CAT
BO06006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 822 | CG5171-PF | 1..819 | 17..835 | 4095 | 100 | Plus |
CG5171-RE | 822 | CG5171-PE | 1..819 | 17..835 | 4095 | 100 | Plus |
CG5171-RD | 891 | CG5171-PD | 70..888 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-RF | 1182 | CG7-RF | 199..1017 | 17..835 | 4095 | 100 | Plus |
CG5171-RE | 1137 | CG5171-RE | 154..972 | 17..835 | 4095 | 100 | Plus |
CG5171-RD | 1156 | CG5171-RD | 173..991 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7403541..7404166 | 81..706 | 3130 | 100 | Plus |
2L | 23513712 | 2L | 7404230..7404361 | 704..835 | 660 | 100 | Plus |
2L | 23513712 | 2L | 7403297..7403364 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:02:05 has no hits.
BO06006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:58 Download gff for
BO06006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RC | 1..822 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:37 Download gff for
BO06006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RC | 149..973 | 11..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:14 Download gff for
BO06006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RA | 149..967 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:58 Download gff for
BO06006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RC | 149..973 | 11..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:51 Download gff for
BO06006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5171-RD | 173..991 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:51 Download gff for
BO06006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7403297..7403361 | 17..81 | 100 | -> | Plus |
2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
2L | 7404230..7404361 | 704..837 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:14 Download gff for
BO06006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7403297..7403361 | 17..81 | 100 | -> | Plus |
arm_2L | 7403542..7404163 | 82..703 | 100 | -> | Plus |
arm_2L | 7404230..7404361 | 704..837 | 98 | | Plus |
BO06006.pep Sequence
Translation from 16 to 853
> BO06006.pep
MPEKQVAPVISNLEDFANNLPGYLISESPVAVLLDYDGTLAPIADNPAKT
KMPVELEAILHKIAKHPKVFLAVISGRGLKDVQKQVNIDGITYAGNHGLE
IEYPDGSRHDYELPTEIQKNYTQMVRELKEKVEKNGAWVEDKKVSLTYHY
RDTPAALKDQQKQLASEICTKFGFRANQAHEAIEAKPPVNWNKGEAAVYI
LKQKFGDNWSQKVSVVFAGDDTTDEDAMRVLRGLGRSFRISADAQIQTYA
DFRLPKQAVMTDLLKWIANVYVSASFLDH
BO06006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5171-PF | 273 | CG5171-PF | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PE | 273 | CG5171-PE | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PA | 273 | CG5171-PA | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PB | 273 | CG5171-PB | 1..273 | 1..273 | 1417 | 100 | Plus |
CG5171-PD | 296 | CG5171-PD | 24..296 | 1..273 | 1417 | 100 | Plus |