Clone Sequence Records
BO06007.3prime Sequence
884 bp (771 high quality bases) assembled on 2005-12-02
> BO06007.3prime
ATGGTCTAGAAAGCTTGCTTCCAGTTCGTTATTCTCGTTTTGCCGCCTCA
GGGTCGTGTCATGATCGTCCGCATCATCTTCCTCAAAGCCCGCCATAAGG
CGATTGAATATGTCACCAAACATTCCGCCCAACCCGGGCGGGCCAGAATG
AGCAGCCTCCGGATGCTCGTCGAAATACAGCACCCCAATCTTGGCTACGT
ACTTTAGAAAAGACGTGTCGCGCTTTAGGGATGGATCGTAAAGCTTGCGT
AAGGCCCGAAACCCAGCCACACGCTTCGCGTCAATAAGACGGAATAGGAA
GTACAAGAAGTTGACCAGCGGTTCCTTATAGGGGAACTCATGCTTAAGCA
GCTTGGCGTGGTAGCGTGTGTACTCAGTGAACGTGTCCTCTGCAGTTTTC
CGATCCTTAAGGGATAGCTGCTGCAGCACAGCTTGTACCAGAAACAAGTC
CATCTCGCCCTGGAAGCCCCTGCTCTGGCTGATTTCAATTAGCACTCGCC
CACATAGGCTGCCATCCTGGCAGAGTAGATAGTGGTGACGAGCCGACTCA
ATGTTGCCCTCGGTCCAAAACACGTGCGCAATTAACTTATGGAGCACTGG
GTGGCCATACTGGCCATGCAAGGCCGTGCTCCACTTAATGGTCCGTTGAA
TAAGGGTTTCGCGCTCTACAGTCGCGGAGTTAAGGCCGCGGATCAAAGCC
CCTAGGCGTGGAACCCACAGGAAGTTGTCGGTATCTTCCGCCTGTGGTCC
TCGCTTCTCTAACGTGTCCACCAGAAGGAGACATAGGTCCGCGGCGCTGC
TTTCCTGTTCCTTGNCAATAAGCTGCTGTGCTCCATCAAAGAGCAGTTCC
AGGCAGTCCTGATAGCGTTTCTGCGCCGTATACC
BO06007.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PA | 1020 | CG9853-RA | 152..1017 | 884..19 | 4311 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 268..1133 | 884..19 | 4319 | 99.9 | Minus |
CG9853-RB | 1818 | CG9853-RB | 755..1620 | 884..19 | 4319 | 99.9 | Minus |
CG9853-RA | 1331 | CG9853-RA | 268..1133 | 884..19 | 4319 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4398756..4399385 | 19..648 | 3150 | 100 | Plus |
3R | 32079331 | 3R | 4399446..4399681 | 649..884 | 1169 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:16:44 has no hits.
BO06007.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:07 Download gff for
BO06007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 152..1020 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:57 Download gff for
BO06007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 152..1020 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:30 Download gff for
BO06007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 268..1137 | 13..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:56 Download gff for
BO06007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 268..1137 | 13..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:56 Download gff for
BO06007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4398752..4399385 | 13..648 | 99 | <- | Plus |
3R | 4399446..4399681 | 649..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:30 Download gff for
BO06007.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224474..225107 | 13..648 | 99 | <- | Plus |
arm_3R | 225168..225403 | 649..884 | 99 | | Plus |
BO06007.5prime Sequence
973 bp (793 high quality bases) assembled on 2005-12-02
> BO06007.5prime
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCAATC
GCCCTTATGGCGGGCTTTGAGGA
BO06007.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PA | 1020 | CG9853-RA | 1..937 | 17..953 | 4685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 117..1072 | 17..973 | 4760 | 99.9 | Plus |
CG9853-RB | 1818 | CG9853-RB | 604..1559 | 17..973 | 4760 | 99.9 | Plus |
CG9853-RA | 1331 | CG9853-RA | 117..1072 | 17..973 | 4760 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4398817..4399385 | 973..404 | 2800 | 99.8 | Minus |
3R | 32079331 | 3R | 4399446..4399681 | 403..168 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 4399739..4399893 | 171..17 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:25:14 has no hits.
BO06007.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:08 Download gff for
BO06007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 1..955 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:58 Download gff for
BO06007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-PA | 1..955 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:42 Download gff for
BO06007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1071 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:39:48 Download gff for
BO06007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1071 | 17..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:39:48 Download gff for
BO06007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4398818..4399385 | 404..972 | 99 | <- | Minus |
3R | 4399446..4399680 | 169..403 | 100 | <- | Minus |
3R | 4399742..4399893 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:42 Download gff for
BO06007.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224540..225107 | 404..972 | 99 | <- | Minus |
arm_3R | 225168..225402 | 169..403 | 100 | <- | Minus |
arm_3R | 225464..225615 | 17..168 | 100 | | Minus |
BO06007.complete Sequence
1051 bp (1051 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630219
> BO06007.complete
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCAATC
GCCTTATGGCGGGCTTTGAGGAAGATGATGCGGACGATCATGACACGACC
CTGAGGCGGCAAAACGAGAATAACGAACTGGAAGCAAGCTTTCTAGACCA
T
BO06007.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1020 | CG9853-PC | 1..1017 | 17..1033 | 5085 | 100 | Plus |
CG9853-RB | 1020 | CG9853-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
CG9853-RA | 1020 | CG9853-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-RC | 1508 | CG9853-RC | 117..1133 | 17..1033 | 5085 | 100 | Plus |
CG9853-RB | 1818 | CG9853-RB | 604..1620 | 17..1033 | 5085 | 100 | Plus |
CG9853-RA | 1331 | CG9853-RA | 117..1133 | 17..1033 | 5085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4398756..4399385 | 1033..404 | 3150 | 100 | Minus |
3R | 32079331 | 3R | 4399446..4399681 | 403..168 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 4399739..4399893 | 171..17 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:50:54 has no hits.
BO06007.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:01 Download gff for
BO06007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RB | 1..1020 | 17..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:42 Download gff for
BO06007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RB | 604..1624 | 17..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:10 Download gff for
BO06007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1133 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:01 Download gff for
BO06007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RB | 604..1624 | 17..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:32 Download gff for
BO06007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9853-RA | 117..1133 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:32 Download gff for
BO06007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4398752..4399385 | 404..1035 | 99 | <- | Minus |
3R | 4399446..4399680 | 169..403 | 100 | <- | Minus |
3R | 4399742..4399893 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:10 Download gff for
BO06007.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 224474..225107 | 404..1035 | 99 | <- | Minus |
arm_3R | 225168..225402 | 169..403 | 100 | <- | Minus |
arm_3R | 225464..225615 | 17..168 | 100 | | Minus |
BO06007.pep Sequence
Translation from 16 to 1051
> BO06007.pep
MSAAETGPIASGSAVSTGQRGVSRVLAKLSQSLAGGEFYEAHMMYRTLYF
RYTAQKRYQDCLELLFDGAQQLIAKEQESSAADLCLLLVDTLEKRGPQAE
DTDNFLWVPRLGALIRGLNSATVERETLIQRTIKWSTALHGQYGHPVLHK
LIAHVFWTEGNIESARHHYLLCQDGSLCGRVLIEISQSRGFQGEMDLFLV
QAVLQQLSLKDRKTAEDTFTEYTRYHAKLLKHEFPYKEPLVNFLYFLFRL
IDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYFDEHPEAAHSGPP
GLGGMFGDIFNRLMAGFEEDDADDHDTTLRRQNENNELEASFLDH
BO06007.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9853-PC | 339 | CG9853-PC | 1..339 | 1..339 | 1764 | 100 | Plus |
CG9853-PB | 339 | CG9853-PB | 1..339 | 1..339 | 1764 | 100 | Plus |
CG9853-PA | 339 | CG9853-PA | 1..339 | 1..339 | 1764 | 100 | Plus |