Clone BO06007 Report

Search the DGRC for BO06007

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG9853-RA
Protein status:BO06007.pep: validated full length
Sequenced Size:1051

Clone Sequence Records

BO06007.3prime Sequence

884 bp (771 high quality bases) assembled on 2005-12-02

> BO06007.3prime
ATGGTCTAGAAAGCTTGCTTCCAGTTCGTTATTCTCGTTTTGCCGCCTCA
GGGTCGTGTCATGATCGTCCGCATCATCTTCCTCAAAGCCCGCCATAAGG
CGATTGAATATGTCACCAAACATTCCGCCCAACCCGGGCGGGCCAGAATG
AGCAGCCTCCGGATGCTCGTCGAAATACAGCACCCCAATCTTGGCTACGT
ACTTTAGAAAAGACGTGTCGCGCTTTAGGGATGGATCGTAAAGCTTGCGT
AAGGCCCGAAACCCAGCCACACGCTTCGCGTCAATAAGACGGAATAGGAA
GTACAAGAAGTTGACCAGCGGTTCCTTATAGGGGAACTCATGCTTAAGCA
GCTTGGCGTGGTAGCGTGTGTACTCAGTGAACGTGTCCTCTGCAGTTTTC
CGATCCTTAAGGGATAGCTGCTGCAGCACAGCTTGTACCAGAAACAAGTC
CATCTCGCCCTGGAAGCCCCTGCTCTGGCTGATTTCAATTAGCACTCGCC
CACATAGGCTGCCATCCTGGCAGAGTAGATAGTGGTGACGAGCCGACTCA
ATGTTGCCCTCGGTCCAAAACACGTGCGCAATTAACTTATGGAGCACTGG
GTGGCCATACTGGCCATGCAAGGCCGTGCTCCACTTAATGGTCCGTTGAA
TAAGGGTTTCGCGCTCTACAGTCGCGGAGTTAAGGCCGCGGATCAAAGCC
CCTAGGCGTGGAACCCACAGGAAGTTGTCGGTATCTTCCGCCTGTGGTCC
TCGCTTCTCTAACGTGTCCACCAGAAGGAGACATAGGTCCGCGGCGCTGC
TTTCCTGTTCCTTGNCAATAAGCTGCTGTGCTCCATCAAAGAGCAGTTCC
AGGCAGTCCTGATAGCGTTTCTGCGCCGTATACC

BO06007.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PA 1020 CG9853-RA 152..1017 884..19 4311 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 268..1133 884..19 4319 99.9 Minus
CG9853-RB 1818 CG9853-RB 755..1620 884..19 4319 99.9 Minus
CG9853-RA 1331 CG9853-RA 268..1133 884..19 4319 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398756..4399385 19..648 3150 100 Plus
3R 32079331 3R 4399446..4399681 649..884 1169 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 22:16:44 has no hits.

BO06007.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:07 Download gff for BO06007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 152..1020 18..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:57 Download gff for BO06007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 152..1020 18..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:30 Download gff for BO06007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 268..1137 13..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:56 Download gff for BO06007.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 268..1137 13..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:56 Download gff for BO06007.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4398752..4399385 13..648 99 <- Plus
3R 4399446..4399681 649..884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:30 Download gff for BO06007.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224474..225107 13..648 99 <- Plus
arm_3R 225168..225403 649..884 99   Plus

BO06007.5prime Sequence

973 bp (793 high quality bases) assembled on 2005-12-02

> BO06007.5prime
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCAATC
GCCCTTATGGCGGGCTTTGAGGA

BO06007.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PA 1020 CG9853-RA 1..937 17..953 4685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 117..1072 17..973 4760 99.9 Plus
CG9853-RB 1818 CG9853-RB 604..1559 17..973 4760 99.9 Plus
CG9853-RA 1331 CG9853-RA 117..1072 17..973 4760 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398817..4399385 973..404 2800 99.8 Minus
3R 32079331 3R 4399446..4399681 403..168 1180 100 Minus
3R 32079331 3R 4399739..4399893 171..17 775 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:25:14 has no hits.

BO06007.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:08 Download gff for BO06007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 1..955 17..972 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:58 Download gff for BO06007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-PA 1..955 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:42 Download gff for BO06007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1071 17..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:39:48 Download gff for BO06007.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1071 17..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:39:48 Download gff for BO06007.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4398818..4399385 404..972 99 <- Minus
3R 4399446..4399680 169..403 100 <- Minus
3R 4399742..4399893 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:42 Download gff for BO06007.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224540..225107 404..972 99 <- Minus
arm_3R 225168..225402 169..403 100 <- Minus
arm_3R 225464..225615 17..168 100   Minus

BO06007.complete Sequence

1051 bp (1051 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630219

> BO06007.complete
GAAGTTATCAGTCGACATGTCTGCCGCCGAGACAGGTCCAATAGCCAGCG
GCAGTGCGGTGTCCACTGGACAGCGCGGTGTCAGCCGAGTACTTGCCAAG
TTGTCCCAGTCTCTGGCAGGAGGAGAATTCTATGAAGCGCACATGATGTA
TAGGACGCTGTATTTTCGGTATACGGCGCAGAAACGCTATCAGGACTGCC
TGGAACTGCTCTTTGATGGAGCACAGCAGCTTATTGCCAAGGAACAGGAA
AGCAGCGCCGCGGACCTATGTCTCCTTCTGGTGGACACGTTAGAGAAGCG
AGGACCACAGGCGGAAGATACCGACAACTTCCTGTGGGTTCCACGCCTAG
GGGCTTTGATCCGCGGCCTTAACTCCGCGACTGTAGAGCGCGAAACCCTT
ATTCAACGGACCATTAAGTGGAGCACGGCCTTGCATGGCCAGTATGGCCA
CCCAGTGCTCCATAAGTTAATTGCGCACGTGTTTTGGACCGAGGGCAACA
TTGAGTCGGCTCGTCACCACTATCTACTCTGCCAGGATGGCAGCCTATGT
GGGCGAGTGCTAATTGAAATCAGCCAGAGCAGGGGCTTCCAGGGCGAGAT
GGACTTGTTTCTGGTACAAGCTGTGCTGCAGCAGCTATCCCTTAAGGATC
GGAAAACTGCAGAGGACACGTTCACTGAGTACACACGCTACCACGCCAAG
CTGCTTAAGCATGAGTTCCCCTATAAGGAACCGCTGGTCAACTTCTTGTA
CTTCCTATTCCGTCTTATTGACGCGAAGCGTGTGGCTGGGTTTCGGGCCT
TACGCAAGCTTTACGATCCATCCCTAAAGCGCGACACGTCTTTTCTAAAG
TACGTAGCCAAGATTGGGGTGCTGTATTTCGACGAGCATCCGGAGGCTGC
TCATTCTGGCCCGCCCGGGTTGGGCGGAATGTTTGGTGACATATTCAATC
GCCTTATGGCGGGCTTTGAGGAAGATGATGCGGACGATCATGACACGACC
CTGAGGCGGCAAAACGAGAATAACGAACTGGAAGCAAGCTTTCTAGACCA
T

BO06007.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1020 CG9853-PC 1..1017 17..1033 5085 100 Plus
CG9853-RB 1020 CG9853-PB 1..1017 17..1033 5085 100 Plus
CG9853-RA 1020 CG9853-PA 1..1017 17..1033 5085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-RC 1508 CG9853-RC 117..1133 17..1033 5085 100 Plus
CG9853-RB 1818 CG9853-RB 604..1620 17..1033 5085 100 Plus
CG9853-RA 1331 CG9853-RA 117..1133 17..1033 5085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4398756..4399385 1033..404 3150 100 Minus
3R 32079331 3R 4399446..4399681 403..168 1180 100 Minus
3R 32079331 3R 4399739..4399893 171..17 775 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:50:54 has no hits.

BO06007.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:01 Download gff for BO06007.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 1..1020 17..1034 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:42 Download gff for BO06007.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 604..1624 17..1039 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:10 Download gff for BO06007.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1133 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:01 Download gff for BO06007.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RB 604..1624 17..1039 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:32 Download gff for BO06007.complete
Subject Subject Range Query Range Percent Splice Strand
CG9853-RA 117..1133 17..1035 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:32 Download gff for BO06007.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4398752..4399385 404..1035 99 <- Minus
3R 4399446..4399680 169..403 100 <- Minus
3R 4399742..4399893 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:10 Download gff for BO06007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 224474..225107 404..1035 99 <- Minus
arm_3R 225168..225402 169..403 100 <- Minus
arm_3R 225464..225615 17..168 100   Minus

BO06007.pep Sequence

Translation from 16 to 1051

> BO06007.pep
MSAAETGPIASGSAVSTGQRGVSRVLAKLSQSLAGGEFYEAHMMYRTLYF
RYTAQKRYQDCLELLFDGAQQLIAKEQESSAADLCLLLVDTLEKRGPQAE
DTDNFLWVPRLGALIRGLNSATVERETLIQRTIKWSTALHGQYGHPVLHK
LIAHVFWTEGNIESARHHYLLCQDGSLCGRVLIEISQSRGFQGEMDLFLV
QAVLQQLSLKDRKTAEDTFTEYTRYHAKLLKHEFPYKEPLVNFLYFLFRL
IDAKRVAGFRALRKLYDPSLKRDTSFLKYVAKIGVLYFDEHPEAAHSGPP
GLGGMFGDIFNRLMAGFEEDDADDHDTTLRRQNENNELEASFLDH

BO06007.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9853-PC 339 CG9853-PC 1..339 1..339 1764 100 Plus
CG9853-PB 339 CG9853-PB 1..339 1..339 1764 100 Plus
CG9853-PA 339 CG9853-PA 1..339 1..339 1764 100 Plus