Clone Sequence Records
BO06008.3prime Sequence
846 bp (735 high quality bases) assembled on 2005-12-02
> BO06008.3prime
ATGGTCTAGAAAGCTTGCGACTTTGCGCTTGCGCTTCGCCTTGGTAGCTC
CTTGAGGAGTCGACGTGGCCTGGGCCTCCATTATGGAAAGATCCGGTGTG
GAGGCTCCCTTTCCAGCCACCAGTTTCTTGACCGCCTTGACTTTCGGCCT
GGCTGCCTTGGGCTGAGCCAGAGTTCCAATGGACTTTCGCGACTTTTTAG
TCTTTCCCGCCTCGGATGAATCCGCTTGTAGCTTGACTTTGGTTTTGGCC
GGCTTCTTTCCCGCTTCAGGAATCGCTGTCTGGGATGTTTCCAGCATGGC
CTGCGCGGCAGCGGATGAAGCTGCTTTAGATGCTGGCGGATTATCCTTGG
TTCCATCCTCGGGCTTCTTCTTTTTTACAGCTTGTTTTGTTTTCCGCTCG
GTTGGTTTACTGGATTTTTCCTTGGAGGCCTTCTTTTCCTTCATCTTCGC
CTTGGCCTCTTTCTTTTGAATCTTCTCCTTTAAAACTTTCTCAACTTTGG
CTTTCTTTTCCTTCTCCTTCTGTTTCTTTGCCTTCATTTTCTCCACAGCC
TTTGAGGAGTTCTTCTGCTTATCGGTGAGTTTAAAGGATCGCTTAACCAT
CACCACTTCGCCGTTGGCTTCGGCCAATTTTAAAGCTCGATGGAGGAGGC
GGGCGGTTTTCTTCGGATCCTTCCACTCCTGACCATTGTCCTTTAGGTAT
GTCATTATGGCCTGAACCGATGAGCCCGATCGGCTCGCCAACTTCCCGAT
GGGCATAAGAGCTAGGGATATGAGCGTACCCTTTGTTTTTGGGACCATCG
ACTTGGGGGTGTCAGAATCGGGGGGCACAGTTTCGACCCATCATCA
BO06008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3509-PA | 1062 | CG3509-RA | 250..1059 | 828..19 | 3975 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1279 | CG3509-RA | 372..1200 | 846..19 | 4075 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14663821..14664287 | 846..381 | 2240 | 99.1 | Minus |
3R | 32079331 | 3R | 14664381..14664743 | 381..19 | 1815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:08 has no hits.
BO06008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:09 Download gff for
BO06008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 232..1062 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:59 Download gff for
BO06008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 232..1062 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:53 Download gff for
BO06008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 380..1212 | 11..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:33 Download gff for
BO06008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BigH1-RA | 373..1205 | 11..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:33 Download gff for
BO06008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14663822..14664286 | 382..845 | 99 | -> | Minus |
3R | 14664381..14664748 | 11..381 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:53 Download gff for
BO06008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10489544..10490008 | 382..845 | 99 | -> | Minus |
arm_3R | 10490103..10490470 | 11..381 | 98 | | Minus |
BO06008.5prime Sequence
862 bp (683 high quality bases) assembled on 2005-12-02
> BO06008.5prime
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCCAGGA
TAATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCGGCGCAGGCCATGC
TGGAAACATCCCAGACAGCGATTCCTGAGGCGGGAAAGAACCGGGCAAAA
ACAAAGTCAAGC
BO06008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3509-PA | 1062 | CG3509-RA | 1..824 | 17..840 | 4045 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1279 | CG3509-RA | 140..988 | 15..862 | 4145 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14663589..14664287 | 15..713 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 14664381..14664531 | 713..862 | 630 | 96 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:28:01 has no hits.
BO06008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:10 Download gff for
BO06008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:01 Download gff for
BO06008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-PA | 1..847 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:38 Download gff for
BO06008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 147..995 | 15..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:25 Download gff for
BO06008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BigH1-RA | 140..988 | 15..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:25 Download gff for
BO06008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14663589..14664286 | 15..712 | 100 | -> | Plus |
3R | 14664381..14664514 | 713..846 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:38 Download gff for
BO06008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10489311..10490008 | 15..712 | 100 | -> | Plus |
arm_3R | 10490103..10490236 | 713..846 | 96 | <- | Plus |
BO06008.complete Sequence
1093 bp (1093 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630220
> BO06008.complete
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAAGGA
TAATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAGGCCATGC
TGGAAACATCCCAGACAGCGATTCCTGAAGCGGGAAAGAAGCCGGCCAAA
ACCAAAGTCAAGCTACAAGCGGATTCATCCGAGGCGGGAAAGACTAAAAA
GTCGCGAAAGTCCATTGGAACTCTGGCTCAGCCCAAGGCAGCCAGGCCGA
AAGTCAAGGCGGTCAAGAAACTGGTGGCTGGAAAGGGAGCCTCCACACCG
GATCTTTCCATAATGGAGGCCCAGGCCACGTCGACTCCTCAAGGAGCTAC
CAAGGCGAAGCGCAAGCGCAAAGTCGCAAGCTTTCTAGACCAT
BO06008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1062 | CG3509-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-RA | 1279 | CG3509-RA | 140..1200 | 15..1075 | 5305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14663589..14664287 | 15..713 | 3495 | 100 | Plus |
3R | 32079331 | 3R | 14664381..14664743 | 713..1075 | 1815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:57 has no hits.
BO06008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:59 Download gff for
BO06008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 1..1062 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:38 Download gff for
BO06008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 147..1212 | 15..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:21 Download gff for
BO06008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 149..1207 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:59 Download gff for
BO06008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3509-RA | 147..1212 | 15..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:26 Download gff for
BO06008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BigH1-RA | 142..1200 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:26 Download gff for
BO06008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14663591..14664286 | 17..712 | 100 | -> | Plus |
3R | 14664381..14664743 | 713..1077 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:21 Download gff for
BO06008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10489313..10490008 | 17..712 | 100 | -> | Plus |
arm_3R | 10490103..10490465 | 713..1077 | 99 | | Plus |
BO06008.pep Sequence
Translation from 16 to 1093
> BO06008.pep
MKLKPVERNDGSDDESEEEMPNDHPESEDSNMGEEEELPEEDEEEMEEDE
EEDRQDGDEVETDNLGADRNPYPTPPPDDGSKLVPPDSDNPKSMVPKPKG
TLISLALMAIGKLASRSGSSVQAIMTYLKDNGQEWKDPKKTARLLHRALK
LAEANGEVVMVKRSFKLTDKQKNSSKAVEKMKAKKQKEKEKKAKVEKVLK
EKIQKKEAKAKMKEKKASKEKSSKPTERKTKQAVKKKKPEDGTKDNPPAS
KAASSAAAQAMLETSQTAIPEAGKKPAKTKVKLQADSSEAGKTKKSRKSI
GTLAQPKAARPKVKAVKKLVAGKGASTPDLSIMEAQATSTPQGATKAKRK
RKVASFLDH
BO06008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BigH1-PA | 353 | CG3509-PA | 1..353 | 1..353 | 1771 | 100 | Plus |
futsch-PF | 5495 | CG34387-PF | 1997..2335 | 10..354 | 162 | 20.2 | Plus |
futsch-PE | 5495 | CG34387-PE | 1997..2335 | 10..354 | 162 | 20.2 | Plus |
futsch-PC | 5495 | CG34387-PC | 1997..2335 | 10..354 | 162 | 20.2 | Plus |
futsch-PF | 5495 | CG34387-PF | 3349..3667 | 7..354 | 160 | 21.3 | Plus |
futsch-PE | 5495 | CG34387-PE | 3349..3667 | 7..354 | 160 | 21.3 | Plus |
futsch-PC | 5495 | CG34387-PC | 3349..3667 | 7..354 | 160 | 21.3 | Plus |