Clone BO06008 Report

Search the DGRC for BO06008

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG3509-RA
Protein status:BO06008.pep: validated full length
Sequenced Size:1093

Clone Sequence Records

BO06008.3prime Sequence

846 bp (735 high quality bases) assembled on 2005-12-02

> BO06008.3prime
ATGGTCTAGAAAGCTTGCGACTTTGCGCTTGCGCTTCGCCTTGGTAGCTC
CTTGAGGAGTCGACGTGGCCTGGGCCTCCATTATGGAAAGATCCGGTGTG
GAGGCTCCCTTTCCAGCCACCAGTTTCTTGACCGCCTTGACTTTCGGCCT
GGCTGCCTTGGGCTGAGCCAGAGTTCCAATGGACTTTCGCGACTTTTTAG
TCTTTCCCGCCTCGGATGAATCCGCTTGTAGCTTGACTTTGGTTTTGGCC
GGCTTCTTTCCCGCTTCAGGAATCGCTGTCTGGGATGTTTCCAGCATGGC
CTGCGCGGCAGCGGATGAAGCTGCTTTAGATGCTGGCGGATTATCCTTGG
TTCCATCCTCGGGCTTCTTCTTTTTTACAGCTTGTTTTGTTTTCCGCTCG
GTTGGTTTACTGGATTTTTCCTTGGAGGCCTTCTTTTCCTTCATCTTCGC
CTTGGCCTCTTTCTTTTGAATCTTCTCCTTTAAAACTTTCTCAACTTTGG
CTTTCTTTTCCTTCTCCTTCTGTTTCTTTGCCTTCATTTTCTCCACAGCC
TTTGAGGAGTTCTTCTGCTTATCGGTGAGTTTAAAGGATCGCTTAACCAT
CACCACTTCGCCGTTGGCTTCGGCCAATTTTAAAGCTCGATGGAGGAGGC
GGGCGGTTTTCTTCGGATCCTTCCACTCCTGACCATTGTCCTTTAGGTAT
GTCATTATGGCCTGAACCGATGAGCCCGATCGGCTCGCCAACTTCCCGAT
GGGCATAAGAGCTAGGGATATGAGCGTACCCTTTGTTTTTGGGACCATCG
ACTTGGGGGTGTCAGAATCGGGGGGCACAGTTTCGACCCATCATCA

BO06008.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3509-PA 1062 CG3509-RA 250..1059 828..19 3975 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1279 CG3509-RA 372..1200 846..19 4075 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14663821..14664287 846..381 2240 99.1 Minus
3R 32079331 3R 14664381..14664743 381..19 1815 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:57:08 has no hits.

BO06008.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:09 Download gff for BO06008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 232..1062 18..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:04:59 Download gff for BO06008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 232..1062 18..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:53 Download gff for BO06008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 380..1212 11..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:33 Download gff for BO06008.3prime
Subject Subject Range Query Range Percent Splice Strand
BigH1-RA 373..1205 11..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:33 Download gff for BO06008.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14663822..14664286 382..845 99 -> Minus
3R 14664381..14664748 11..381 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:53 Download gff for BO06008.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10489544..10490008 382..845 99 -> Minus
arm_3R 10490103..10490470 11..381 98   Minus

BO06008.5prime Sequence

862 bp (683 high quality bases) assembled on 2005-12-02

> BO06008.5prime
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCCAGGA
TAATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCGGCGCAGGCCATGC
TGGAAACATCCCAGACAGCGATTCCTGAGGCGGGAAAGAACCGGGCAAAA
ACAAAGTCAAGC

BO06008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3509-PA 1062 CG3509-RA 1..824 17..840 4045 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1279 CG3509-RA 140..988 15..862 4145 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14663589..14664287 15..713 3495 100 Plus
3R 32079331 3R 14664381..14664531 713..862 630 96 Plus
Blast to na_te.dros performed on 2015-02-12 10:28:01 has no hits.

BO06008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:10 Download gff for BO06008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:01 Download gff for BO06008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-PA 1..847 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:38 Download gff for BO06008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 147..995 15..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:25 Download gff for BO06008.5prime
Subject Subject Range Query Range Percent Splice Strand
BigH1-RA 140..988 15..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:25 Download gff for BO06008.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14663589..14664286 15..712 100 -> Plus
3R 14664381..14664514 713..846 96 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:38 Download gff for BO06008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10489311..10490008 15..712 100 -> Plus
arm_3R 10490103..10490236 713..846 96 <- Plus

BO06008.complete Sequence

1093 bp (1093 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630220

> BO06008.complete
GAAGTTATCAGTCGACATGAAACTAAAGCCGGTTGAACGCAATGATGGCT
CGGATGATGAGAGCGAGGAGGAAATGCCAAATGATCATCCCGAATCCGAA
GACTCCAATATGGGCGAAGAAGAGGAGCTCCCGGAGGAAGATGAGGAGGA
GATGGAGGAGGATGAGGAGGAGGATCGGCAGGACGGTGACGAGGTCGAGA
CAGATAATCTCGGAGCTGATCGCAATCCCTATCCCACTCCGCCGCCTGAT
GATGGGTCGAAACTGGTGCCCCCCGATTCTGACAACCCCAAGTCGATGGT
CCCAAAACCAAAGGGTACGCTCATATCCCTAGCTCTTATGGCCATCGGGA
AGTTGGCGAGCCGATCGGGCTCATCGGTTCAGGCCATAATGACATACCTA
AAGGACAATGGTCAGGAGTGGAAGGATCCGAAGAAAACCGCCCGCCTCCT
CCATCGAGCTTTAAAATTGGCCGAAGCCAACGGCGAAGTGGTGATGGTTA
AGCGATCCTTTAAACTCACCGATAAGCAGAAGAACTCCTCAAAGGCTGTG
GAGAAAATGAAGGCAAAGAAACAGAAGGAGAAGGAAAAGAAAGCCAAAGT
TGAGAAAGTTTTAAAGGAGAAGATTCAAAAGAAAGAGGCCAAGGCGAAGA
TGAAGGAAAAGAAGGCCTCCAAGGAAAAATCCAGTAAACCAACCGAGCGG
AAAACAAAACAAGCTGTAAAAAAGAAGAAGCCCGAGGATGGAACCAAGGA
TAATCCGCCAGCATCTAAAGCAGCTTCATCCGCTGCCGCGCAGGCCATGC
TGGAAACATCCCAGACAGCGATTCCTGAAGCGGGAAAGAAGCCGGCCAAA
ACCAAAGTCAAGCTACAAGCGGATTCATCCGAGGCGGGAAAGACTAAAAA
GTCGCGAAAGTCCATTGGAACTCTGGCTCAGCCCAAGGCAGCCAGGCCGA
AAGTCAAGGCGGTCAAGAAACTGGTGGCTGGAAAGGGAGCCTCCACACCG
GATCTTTCCATAATGGAGGCCCAGGCCACGTCGACTCCTCAAGGAGCTAC
CAAGGCGAAGCGCAAGCGCAAAGTCGCAAGCTTTCTAGACCAT

BO06008.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1062 CG3509-PA 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-RA 1279 CG3509-RA 140..1200 15..1075 5305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14663589..14664287 15..713 3495 100 Plus
3R 32079331 3R 14664381..14664743 713..1075 1815 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:57 has no hits.

BO06008.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:59 Download gff for BO06008.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 1..1062 17..1076 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:38 Download gff for BO06008.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 147..1212 15..1083 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:21 Download gff for BO06008.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 149..1207 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:59 Download gff for BO06008.complete
Subject Subject Range Query Range Percent Splice Strand
CG3509-RA 147..1212 15..1083 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:26 Download gff for BO06008.complete
Subject Subject Range Query Range Percent Splice Strand
BigH1-RA 142..1200 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:26 Download gff for BO06008.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14663591..14664286 17..712 100 -> Plus
3R 14664381..14664743 713..1077 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:21 Download gff for BO06008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10489313..10490008 17..712 100 -> Plus
arm_3R 10490103..10490465 713..1077 99   Plus

BO06008.pep Sequence

Translation from 16 to 1093

> BO06008.pep
MKLKPVERNDGSDDESEEEMPNDHPESEDSNMGEEEELPEEDEEEMEEDE
EEDRQDGDEVETDNLGADRNPYPTPPPDDGSKLVPPDSDNPKSMVPKPKG
TLISLALMAIGKLASRSGSSVQAIMTYLKDNGQEWKDPKKTARLLHRALK
LAEANGEVVMVKRSFKLTDKQKNSSKAVEKMKAKKQKEKEKKAKVEKVLK
EKIQKKEAKAKMKEKKASKEKSSKPTERKTKQAVKKKKPEDGTKDNPPAS
KAASSAAAQAMLETSQTAIPEAGKKPAKTKVKLQADSSEAGKTKKSRKSI
GTLAQPKAARPKVKAVKKLVAGKGASTPDLSIMEAQATSTPQGATKAKRK
RKVASFLDH

BO06008.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
BigH1-PA 353 CG3509-PA 1..353 1..353 1771 100 Plus
futsch-PF 5495 CG34387-PF 1997..2335 10..354 162 20.2 Plus
futsch-PE 5495 CG34387-PE 1997..2335 10..354 162 20.2 Plus
futsch-PC 5495 CG34387-PC 1997..2335 10..354 162 20.2 Plus
futsch-PF 5495 CG34387-PF 3349..3667 7..354 160 21.3 Plus
futsch-PE 5495 CG34387-PE 3349..3667 7..354 160 21.3 Plus
futsch-PC 5495 CG34387-PC 3349..3667 7..354 160 21.3 Plus