Clone BO06009 Report

Search the DGRC for BO06009

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG5220-RA
Protein status:BO06009.pep: validated full length
Sequenced Size:940

Clone Sequence Records

BO06009.3prime Sequence

797 bp (771 high quality bases) assembled on 2005-12-02

> BO06009.3prime
ATGGTCTAGAAAGCTTGCGATAATATGGCGTTGTTCATCATAGACTTGCT
TTAGAATCTCTTTAAATTCCAGGGGATAAGATGCGTCGTCCATAACAGCA
TCGTAAACATACTCTAAATTTGATTTGGATTCATCTGAGGAGGAAGTCTT
GCCCTCTTCGGGATCACTCAACCCATTTAAGTCTCCACAGGCTATAAAAG
GAACTAGACGACGGTTTACTTCCGACCCTGTTTTCTGTGCCAGTAGCCGT
ATATCATCGCGAGCAGGGTTAATCACTTGAGGAATGTAGCCCTCGGGAAG
GCAAAAATCGGAGCAAACCACAAAAGCTTCAATGCTCGAAGGACGCGAAC
TCGGTGGCTTGTAGATGTCGAATTTTTTGAAAAATATCTGCATCTGGGAG
CTCAATAGCGATGTGGCATTTCCCTTAAAAATCTTGGCCACAAAAGTTCC
GCCAGTTTCCAGCACACAGGTGGCAATGCTGAGAGCAGCCACAAGTAACT
GGTGCTGCATGTACTCGTCCATTTCATGGACCCCGGTGACATCGGGGGCT
CCATCGCAGACCACCAGCTGGGCTTTTTCATTTCCACCAAAGTGACCGAT
GATTGCTTCGGCGGTCGACTGCTTTGTGATATCTCCCTGGAGCTGGAGTA
TTCCACGGATCGGGGCCATGGCCTGCAGATCAACGGCTATGATCTTAACA
GCGGACTTTTCATCGTCCGTTTCGCAGGTATCGTAGAGTTTCCGAGAGAG
CACCTGGGACCAGCTGCCAGGAGCAGCACACAGATCGACTGCCCGCT

BO06009.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-PA 909 CG5220-RA 128..906 797..19 3895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 1102 CG5220-RA 293..1071 797..19 3895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041029..17041705 797..121 3385 100 Minus
3R 32079331 3R 17041763..17041864 120..19 510 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:00:33 has no hits.

BO06009.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:11 Download gff for BO06009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 128..909 15..797 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:02 Download gff for BO06009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 128..909 15..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:02 Download gff for BO06009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 293..1080 10..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:32 Download gff for BO06009.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 293..1080 10..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:32 Download gff for BO06009.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17041029..17041705 121..797 100 -> Minus
3R 17041763..17041873 10..120 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:02 Download gff for BO06009.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12866751..12867427 121..797 100 -> Minus
arm_3R 12867485..12867595 10..120 96   Minus

BO06009.5prime Sequence

780 bp (697 high quality bases) assembled on 2005-12-02

> BO06009.5prime
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAANACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCC

BO06009.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-PA 909 CG5220-RA 1..764 17..780 3801 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 1102 CG5220-RA 166..929 17..780 3809 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041022..17041665 137..780 3209 99.8 Plus
3R 32079331 3R 17040847..17040969 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:01:07 has no hits.

BO06009.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:12 Download gff for BO06009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 1..764 17..780 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:03 Download gff for BO06009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-PA 1..764 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:16 Download gff for BO06009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..929 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:56 Download gff for BO06009.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..929 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:56 Download gff for BO06009.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17040847..17040967 17..137 100 -> Plus
3R 17041023..17041665 138..780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:16 Download gff for BO06009.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12866569..12866689 17..137 100 -> Plus
arm_3R 12866745..12867387 138..780 99   Plus

BO06009.complete Sequence

940 bp (940 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630221

> BO06009.complete
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAAAACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCCCGAAGAGGGCAAGACTTCCT
CCTCAGATGAATCCAAATCAAATTTAGAGTATGTTTACGATGCTGTTATG
GACGACGCATCTTATCCCCTGGAATTTAAAGAGATTCTAAAGCAAGTCTA
TGATGAACAACGCCATATTATCGCAAGCTTTCTAGACCAT

BO06009.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 909 CG5220-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-RA 1102 CG5220-RA 166..1071 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17041022..17041705 137..820 3420 100 Plus
3R 32079331 3R 17040847..17040969 17..139 615 100 Plus
3R 32079331 3R 17041763..17041864 821..922 510 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:05:18 has no hits.

BO06009.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:02 Download gff for BO06009.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 1..909 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:44 Download gff for BO06009.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 164..1078 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:40 Download gff for BO06009.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..1071 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:03 Download gff for BO06009.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 164..1078 17..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:31 Download gff for BO06009.complete
Subject Subject Range Query Range Percent Splice Strand
CG5220-RA 166..1071 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:31 Download gff for BO06009.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17040847..17040967 17..137 100 -> Plus
3R 17041023..17041705 138..820 100 -> Plus
3R 17041763..17041864 821..924 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:40 Download gff for BO06009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12866569..12866689 17..137 100 -> Plus
arm_3R 12866745..12867427 138..820 100 -> Plus
arm_3R 12867485..12867586 821..924 98   Plus

BO06009.pep Sequence

Translation from 16 to 940

> BO06009.pep
MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCA
APGSWSQVLSRKLYDTCETDDEKSAVKIIAVDLQAMAPIRGILQLQGDIT
KQSTAEAIIGHFGGNEKAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSI
ATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPPSSRPSSIEA
FVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGSEVNRRLVPFIACGDLN
GLSDPEEGKTSSSDESKSNLEYVYDAVMDDASYPLEFKEILKQVYDEQRH
IIASFLDH

BO06009.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5220-PA 302 CG5220-PA 1..302 1..302 1556 100 Plus
CG7009-PA 320 CG7009-PA 1..213 1..215 693 62.8 Plus
CG8939-PA 817 CG8939-PA 7..212 1..219 315 36.1 Plus
CG11447-PA 250 CG11447-PA 48..244 10..207 200 28.8 Plus