Clone Sequence Records
BO06009.3prime Sequence
797 bp (771 high quality bases) assembled on 2005-12-02
> BO06009.3prime
ATGGTCTAGAAAGCTTGCGATAATATGGCGTTGTTCATCATAGACTTGCT
TTAGAATCTCTTTAAATTCCAGGGGATAAGATGCGTCGTCCATAACAGCA
TCGTAAACATACTCTAAATTTGATTTGGATTCATCTGAGGAGGAAGTCTT
GCCCTCTTCGGGATCACTCAACCCATTTAAGTCTCCACAGGCTATAAAAG
GAACTAGACGACGGTTTACTTCCGACCCTGTTTTCTGTGCCAGTAGCCGT
ATATCATCGCGAGCAGGGTTAATCACTTGAGGAATGTAGCCCTCGGGAAG
GCAAAAATCGGAGCAAACCACAAAAGCTTCAATGCTCGAAGGACGCGAAC
TCGGTGGCTTGTAGATGTCGAATTTTTTGAAAAATATCTGCATCTGGGAG
CTCAATAGCGATGTGGCATTTCCCTTAAAAATCTTGGCCACAAAAGTTCC
GCCAGTTTCCAGCACACAGGTGGCAATGCTGAGAGCAGCCACAAGTAACT
GGTGCTGCATGTACTCGTCCATTTCATGGACCCCGGTGACATCGGGGGCT
CCATCGCAGACCACCAGCTGGGCTTTTTCATTTCCACCAAAGTGACCGAT
GATTGCTTCGGCGGTCGACTGCTTTGTGATATCTCCCTGGAGCTGGAGTA
TTCCACGGATCGGGGCCATGGCCTGCAGATCAACGGCTATGATCTTAACA
GCGGACTTTTCATCGTCCGTTTCGCAGGTATCGTAGAGTTTCCGAGAGAG
CACCTGGGACCAGCTGCCAGGAGCAGCACACAGATCGACTGCCCGCT
BO06009.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-PA | 909 | CG5220-RA | 128..906 | 797..19 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 1102 | CG5220-RA | 293..1071 | 797..19 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17041029..17041705 | 797..121 | 3385 | 100 | Minus |
3R | 32079331 | 3R | 17041763..17041864 | 120..19 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:00:33 has no hits.
BO06009.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:11 Download gff for
BO06009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 128..909 | 15..797 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:02 Download gff for
BO06009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 128..909 | 15..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:02 Download gff for
BO06009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 293..1080 | 10..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:32 Download gff for
BO06009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 293..1080 | 10..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:32 Download gff for
BO06009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17041029..17041705 | 121..797 | 100 | -> | Minus |
3R | 17041763..17041873 | 10..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:02 Download gff for
BO06009.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12866751..12867427 | 121..797 | 100 | -> | Minus |
arm_3R | 12867485..12867595 | 10..120 | 96 | | Minus |
BO06009.5prime Sequence
780 bp (697 high quality bases) assembled on 2005-12-02
> BO06009.5prime
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAANACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCC
BO06009.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-PA | 909 | CG5220-RA | 1..764 | 17..780 | 3801 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 1102 | CG5220-RA | 166..929 | 17..780 | 3809 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17041022..17041665 | 137..780 | 3209 | 99.8 | Plus |
3R | 32079331 | 3R | 17040847..17040969 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:01:07 has no hits.
BO06009.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:12 Download gff for
BO06009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 1..764 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:03 Download gff for
BO06009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-PA | 1..764 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:16 Download gff for
BO06009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..929 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:56 Download gff for
BO06009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..929 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:56 Download gff for
BO06009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17040847..17040967 | 17..137 | 100 | -> | Plus |
3R | 17041023..17041665 | 138..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:16 Download gff for
BO06009.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12866569..12866689 | 17..137 | 100 | -> | Plus |
arm_3R | 12866745..12867387 | 138..780 | 99 | | Plus |
BO06009.complete Sequence
940 bp (940 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630221
> BO06009.complete
GAAGTTATCAGTCGACATGGGGAAAACATCAAAGGACAAACGAGATATCT
ATTACCGACAAGCCAAAGACGAAGGCTGGAGGGCCAGGAGTGCCTTCAAG
TTGCTCCACGTGGACGAAGCCTACGGAATTCTAAATGGTGTTCAGCGGGC
AGTCGATCTGTGTGCTGCTCCTGGCAGCTGGTCCCAGGTGCTCTCTCGGA
AACTCTACGATACCTGCGAAACGGACGATGAAAAGTCCGCTGTTAAGATC
ATAGCCGTTGATCTGCAGGCCATGGCCCCGATCCGTGGAATACTCCAGCT
CCAGGGAGATATCACAAAGCAGTCGACCGCCGAAGCAATCATCGGTCACT
TTGGTGGAAATGAAAAAGCCCAGCTGGTGGTCTGCGATGGAGCCCCCGAT
GTCACCGGGGTCCATGAAATGGACGAGTACATGCAGCACCAGTTACTTGT
GGCTGCTCTCAGCATTGCCACCTGTGTGCTGGAAACTGGCGGAACTTTTG
TGGCCAAGATTTTTAAGGGAAATGCCACATCGCTATTGAGCTCCCAGATG
CAGATATTTTTCAAAAAATTCGACATCTACAAGCCACCGAGTTCGCGTCC
TTCGAGCATTGAAGCTTTTGTGGTTTGCTCCGATTTTTGCCTTCCCGAGG
GCTACATTCCTCAAGTGATTAACCCTGCTCGCGATGATATACGGCTACTG
GCACAGAAAACAGGGTCGGAAGTAAACCGTCGTCTAGTTCCTTTTATAGC
CTGTGGAGACTTAAATGGGTTGAGTGATCCCGAAGAGGGCAAGACTTCCT
CCTCAGATGAATCCAAATCAAATTTAGAGTATGTTTACGATGCTGTTATG
GACGACGCATCTTATCCCCTGGAATTTAAAGAGATTCTAAAGCAAGTCTA
TGATGAACAACGCCATATTATCGCAAGCTTTCTAGACCAT
BO06009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 909 | CG5220-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-RA | 1102 | CG5220-RA | 166..1071 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17041022..17041705 | 137..820 | 3420 | 100 | Plus |
3R | 32079331 | 3R | 17040847..17040969 | 17..139 | 615 | 100 | Plus |
3R | 32079331 | 3R | 17041763..17041864 | 821..922 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:05:18 has no hits.
BO06009.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:02 Download gff for
BO06009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:44 Download gff for
BO06009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 164..1078 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:40 Download gff for
BO06009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..1071 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:03 Download gff for
BO06009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 164..1078 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:31 Download gff for
BO06009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5220-RA | 166..1071 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:31 Download gff for
BO06009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17040847..17040967 | 17..137 | 100 | -> | Plus |
3R | 17041023..17041705 | 138..820 | 100 | -> | Plus |
3R | 17041763..17041864 | 821..924 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:40 Download gff for
BO06009.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12866569..12866689 | 17..137 | 100 | -> | Plus |
arm_3R | 12866745..12867427 | 138..820 | 100 | -> | Plus |
arm_3R | 12867485..12867586 | 821..924 | 98 | | Plus |
BO06009.pep Sequence
Translation from 16 to 940
> BO06009.pep
MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCA
APGSWSQVLSRKLYDTCETDDEKSAVKIIAVDLQAMAPIRGILQLQGDIT
KQSTAEAIIGHFGGNEKAQLVVCDGAPDVTGVHEMDEYMQHQLLVAALSI
ATCVLETGGTFVAKIFKGNATSLLSSQMQIFFKKFDIYKPPSSRPSSIEA
FVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGSEVNRRLVPFIACGDLN
GLSDPEEGKTSSSDESKSNLEYVYDAVMDDASYPLEFKEILKQVYDEQRH
IIASFLDH
BO06009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5220-PA | 302 | CG5220-PA | 1..302 | 1..302 | 1556 | 100 | Plus |
CG7009-PA | 320 | CG7009-PA | 1..213 | 1..215 | 693 | 62.8 | Plus |
CG8939-PA | 817 | CG8939-PA | 7..212 | 1..219 | 315 | 36.1 | Plus |
CG11447-PA | 250 | CG11447-PA | 48..244 | 10..207 | 200 | 28.8 | Plus |