Clone Sequence Records
BO06010.3prime Sequence
815 bp (769 high quality bases) assembled on 2005-12-02
> BO06010.3prime
ATGGTCTAGAAAGCTTGCAACCTTTTTCACGCGTTTAATGGTTCTTGCCT
TCTTTCTTTCAATCACATCTTTCACGGCCTGCAGTTGTTTCTCCTTGATC
TTCTTGGTCAGCGCCGATTTGGGTGTCTGTTTGGCGGCTTCCTCCTTCTT
CTTTTTGGCTATCGCAGCCAGTATCTTGGCCGTCTCCACGGGATCATCGT
CCTCGAATAGCTCATCGTTATCCATGCCATCGTAGGCTCTAATAGGTCGC
GTGGCCTCGTGCTTGACCTTTTGCTCCACTCGGTTCACGTACTTATCCTT
GGCAGCCTTCTTAAGTACCTGCCGCTGTTTGGATGGACTCACGTAGTCCG
GATTCTCCCAAATGGTTTTGCCAGTGAAGGAACCATCGAATATTTTTACA
GGATTCATCACGTAACGCGGCCCGACTTCGGACAAACCGCCATCTTCGGA
TAGAATCTGGAAATTTCTGAACCAGATGCGTTTGTCCAGGTAGGTGAAGG
TGAAAACGTGATCGACGAAGGGCTGGCTCTTGGGATGATGGTTGGGCACG
GAGTAGGTCTGCACGAACAGCTCCTTGAGCAGCTTAAGGTGCGGCAGCTC
GTCGAATTTGGAGTCAAACGAGAGCAGCGGACGTGATCCCCGCAAGCAGT
TTCCCGTCATCTTCAGTTCGGCCATTGTATGAATGTTTTCGATGAGGAAT
TTAGCGGATGGACCAGTCGATCCCGAGGTGTTGGATATCCACATGTACAG
ATCCCTTTTCCGGCGTCCCTCGAACAGCATCGCCTTGTTGCAGTGCTTCA
TTTCGCACATTTCGT
BO06010.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-PA | 1071 | CG11583-RA | 272..1068 | 815..19 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1253 | CG11583-RA | 360..1156 | 815..19 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4281601..4282397 | 19..815 | 3985 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:01:35 has no hits.
BO06010.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:13 Download gff for
BO06010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32253-PA | 272..1071 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:05 Download gff for
BO06010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-PA | 272..1071 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:20 Download gff for
BO06010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 360..1159 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:00 Download gff for
BO06010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 360..1159 | 15..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:00 Download gff for
BO06010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4281597..4282397 | 15..815 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:20 Download gff for
BO06010.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4281597..4282397 | 15..815 | 99 | | Plus |
BO06010.5prime Sequence
891 bp (781 high quality bases) assembled on 2005-12-02
> BO06010.5prime
GAAGTTATCAGTCGACATGGGTCGCAAATTCCAGAATAAGAAAAAGAAGG
CCGCGCCGCAGCTGGAGATAGTGCCGCTGGATGAAAATCCACCACTGCCG
CCACAGAGATCGTCAGATGATGTGGTGCCCAAAAAGGAAAAATGGGTGAA
CAAACAGCGCGTGCTGGTCTTCTCCGCCCGCGGTATTAGCCACCGGGACC
GGCACTTAATGAAGGATATTAAGACCCTAATGCCGCACCACCGACCCGAA
TCCAAAATGGAGCGCTCCAAAACCTTGTCGGTGGTCAACGAAATGTGCGA
AATGAAGCACTGCAACAAGGCGATGCTGTTCGAGGGACGCCGGAAAAGGG
ATCTGTACATGTGGATATCCAACACCTCGGGATCGACTGGTCCATCCGCT
AAATTCCTCATCGAAAACATTCATACAATGGCCGAACTGAAGATGACGGG
AAACTGCTTGCGGGGATCACGTCCGCTGCTCTCGTTTGACTCCAAATTCG
ACGAGCTGCCGCACCTTAAGCTGCTCAAGGAGCTGTTCGTGCAGACCTAC
TCCGTGCCCAACCATCATCCCAAGAGCCAGCCCTTCGTCGATCACGTTTT
CACCTTCACCTACCTGGACAAACGCATCTGGTTCAGAAATTTCCAGATTC
TATCCGAAGATGGCGGTTTGTCCGAAGTCGGGCCGCGTTACGTGATGAAT
CCTGTAAAAATATTCGATGGTTCCTTCACTGGCAAAACCATTTGGGAGAA
TCCGGACTACGTGAGTCCATCCAAACAGCGGCAGGTACTTAAGAAGGCTG
CCAAGGATAAGTACGTGAACCGAGTGGAGCAAAAGGTCAAGCACGAGGCC
ACGCGACCTATTAGAGCCTACGATGGCATGGATAACGATGA
BO06010.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-PA | 1071 | CG11583-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1253 | CG11583-RA | 89..963 | 17..891 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4281794..4282550 | 891..135 | 3785 | 100 | Minus |
| 3L | 28110227 | 3L | 4282609..4282729 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:39:43 has no hits.
BO06010.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:14 Download gff for
BO06010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32253-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:06 Download gff for
BO06010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:49 Download gff for
BO06010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..962 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:00:14 Download gff for
BO06010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..962 | 17..890 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:00:14 Download gff for
BO06010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4281795..4282548 | 137..890 | 100 | <- | Minus |
| 3L | 4282610..4282729 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:49 Download gff for
BO06010.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4281795..4282548 | 137..890 | 100 | <- | Minus |
| arm_3L | 4282610..4282729 | 17..136 | 100 | | Minus |
BO06010.complete Sequence
1102 bp (1102 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630222
> BO06010.complete
GAAGTTATCAGTCGACATGGGTCGCAAATTCCAGAATAAGAAAAAGAAGG
CCGCGCCGCAGCTGGAGATAGTGCCGCTGGATGAAAATCCACCACTGCCG
CCACAGAGATCGTCAGATGATGTGGTGCCCAAAAAGGAAAAATGGGTGAA
CAAACAGCGCGTGCTGGTCTTCTCCGCCCGCGGTATTAGCCACCGGGACC
GGCACTTAATGAAGGATATTAAGACCCTAATGCCGCACCACCGACCCGAA
TCCAAAATGGAGCGCTCCAAAACCTTGTCGGTGGTCAACGAAATGTGCGA
AATGAAGCACTGCAACAAGGCGATGCTGTTCGAGGGACGCCGGAAAAGGG
ATCTGTACATGTGGATATCCAACACCTCGGGATCGACTGGTCCATCCGCT
AAATTCCTCATCGAAAACATTCATACAATGGCCGAACTGAAGATGACGGG
AAACTGCTTGCGGGGATCACGTCCGCTGCTCTCGTTTGACTCCAAATTCG
ACGAGCTGCCGCACCTTAAGCTGCTCAAGGAGCTGTTCGTGCAGACCTAC
TCCGTGCCCAACCATCATCCCAAGAGCCAGCCCTTCGTCGATCACGTTTT
CACCTTCACCTACCTGGACAAACGCATCTGGTTCAGAAATTTCCAGATTC
TATCCGAAGATGGCGGTTTGTCCGAAGTCGGGCCGCGTTACGTGATGAAT
CCTGTAAAAATATTCGATGGTTCCTTCACTGGCAAAACCATTTGGGAGAA
TCCGGACTACGTGAGTCCATCCAAACAGCGGCAGGTACTTAAGAAGGCTG
CCAAGGATAAGTACGTGAACCGAGTGGAGCAAAAGGTCAAGCACGAGGCC
ACGCGACCTATTAGAGCCTACGATGGCATGGATAACGATGAGCTATTCGA
GGACGATGATCCCGTGGAGACGGCCAAGATACTGGCTGCGATAGCCAAAA
AGAAGAAGGAGGAAGCCGCCAAACAGACACCCAAATCGGCGCTGACCAAG
AAGATCAAGGAGAAACAACTGCAGGCCGTGAAAGATGTGATTGAAAGAAA
GAAGGCAAGAACCATTAAACGCGTGAAAAAGGTTGCAAGCTTTCTAGACC
AT
BO06010.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1071 | CG11583-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-RA | 1253 | CG11583-RA | 89..1156 | 17..1084 | 5340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4281601..4282550 | 1084..135 | 4750 | 100 | Minus |
| 3L | 28110227 | 3L | 4282609..4282729 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:06:40 has no hits.
BO06010.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:00 Download gff for
BO06010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 1..1071 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:41 Download gff for
BO06010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 70..1140 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:17 Download gff for
BO06010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..1156 | 17..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:00 Download gff for
BO06010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 70..1140 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:01 Download gff for
BO06010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11583-RA | 89..1156 | 17..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:01 Download gff for
BO06010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4281599..4282548 | 137..1086 | 99 | <- | Minus |
| 3L | 4282610..4282729 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:17 Download gff for
BO06010.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4281599..4282548 | 137..1086 | 99 | <- | Minus |
| arm_3L | 4282610..4282729 | 17..136 | 100 | | Minus |
BO06010.pep Sequence
Translation from 16 to 1102
> BO06010.pep
MGRKFQNKKKKAAPQLEIVPLDENPPLPPQRSSDDVVPKKEKWVNKQRVL
VFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHCN
KAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRG
SRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYL
DKRIWFRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVS
PSKQRQVLKKAAKDKYVNRVEQKVKHEATRPIRAYDGMDNDELFEDDDPV
ETAKILAAIAKKKKEEAAKQTPKSALTKKIKEKQLQAVKDVIERKKARTI
KRVKKVASFLDH
BO06010.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11583-PA | 356 | CG11583-PA | 1..356 | 1..356 | 1861 | 100 | Plus |
