Clone Sequence Records
BO06011.3prime Sequence
710 bp (709 high quality bases) assembled on 2005-12-02
> BO06011.3prime
ATGGTCTAGAAAGCTTGCCTGGCTCTTCGCTTTGTTCTCGGCCATGCAGC
TCAGGATGCGGGTCTGCAGAGCCCGTGCACCCTTGAGGTTGATCTCCTCG
TTGTCGGGCAACAACTTATCCATGCGTTCCATCCATTGCTTAGTCTGCGG
GTACTTTTCCCGTTCCACTGGTATGAGCAGATCCAAGGTCACCAGAGTGG
TGTGGATGGACACGTCGGCAACGCTCAGTTCGTTGCCCACCACGAAACTT
CCTTGCTGCAGAAAGTGTTCCAAGTCGGAGTACGCATTGTGGCAGAGGGT
CAGCGATCGGGGGTTGTATTCTCCCTCGCCACCGTAAATGTTCCGAGCCA
CAATGTCCTTTACCACCTGAAATAGCACTCCGTTCTCGTAGTGCATGCGA
TGGTCGATGTGGGCTCTCCTTTTCAAATCCCGCGGATAGAGTTGGTCATT
CCCGGCGTACTTGGCTACCAGGAAGCACACGATGGCGTGACTGTCCACGT
AGACCTCGCCATCGCTGTCCACAAACACCGGGATCTGGTGCTGGGGGTTT
AGCTTGACAAATTCCTCGCTCAGGTGTTCCTTCTTGGCGAAGTCAACGGG
TTTGAGCTCCAGGTCCAGTCCAATAAGTTTGGCCACCAGGATGCATGCCC
TGGCAGGAGGACTAAAAAGGGCGTAGTACAGCGTTGGCTTCGACATGTCG
ACTGATAACT
BO06011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11784-PA | 681 | CG11784-RA | 1..678 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE13-RB | 1061 | CG11784-RB | 230..907 | 696..19 | 3390 | 100 | Minus |
GstE13-RA | 862 | CG11784-RA | 31..708 | 696..19 | 3390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9122620..9123155 | 554..19 | 2680 | 100 | Minus |
2R | 25286936 | 2R | 9122354..9122448 | 696..602 | 475 | 100 | Minus |
2R | 25286936 | 2R | 9122519..9122567 | 601..553 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:49:27 has no hits.
BO06011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:15 Download gff for
BO06011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11784-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:07 Download gff for
BO06011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11784-PA | 1..681 | 18..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:38 Download gff for
BO06011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE13-RA | 23..714 | 11..705 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:09 Download gff for
BO06011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE13-RA | 23..714 | 11..705 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:09 Download gff for
BO06011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9122346..9122448 | 602..705 | 96 | -> | Minus |
2R | 9122519..9122567 | 553..601 | 100 | -> | Minus |
2R | 9122622..9123161 | 11..552 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:38 Download gff for
BO06011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5009851..5009953 | 602..705 | 96 | -> | Minus |
arm_2R | 5010024..5010072 | 553..601 | 100 | -> | Minus |
arm_2R | 5010127..5010666 | 11..552 | 99 | | Minus |
BO06011.5prime Sequence
710 bp (682 high quality bases) assembled on 2005-12-02
> BO06011.5prime
GAAGTTATCAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTA
GTCCTCCTGCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGAC
CTGGAGCTCAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGA
ATTTGTCAAGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCG
ATGGCGAGGTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCC
AAGTACGCCGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGC
CCACATCGACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGG
TAAAGGACATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAAC
CCCCGATCGCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTT
TCTGCAGCAAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACG
TGTCCATCCACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAA
CGGGAAAAGTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTT
GTTGCCCGACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGA
CCCGCATCCTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGGCAAGC
TTTCTAGACC
BO06011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11784-PA | 681 | CG11784-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE13-RB | 1061 | CG11784-RB | 230..907 | 17..694 | 3390 | 100 | Plus |
GstE13-RA | 862 | CG11784-RA | 31..708 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9122620..9123155 | 159..694 | 2680 | 100 | Plus |
2R | 25286936 | 2R | 9122354..9122448 | 17..111 | 475 | 100 | Plus |
2R | 25286936 | 2R | 9122519..9122567 | 112..160 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:02:31 has no hits.
BO06011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:16 Download gff for
BO06011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11784-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:08 Download gff for
BO06011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11784-PA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:23 Download gff for
BO06011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE13-RA | 23..714 | 8..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:10 Download gff for
BO06011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE13-RA | 23..714 | 8..702 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:10 Download gff for
BO06011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9122346..9122448 | 8..111 | 96 | -> | Plus |
2R | 9122519..9122567 | 112..160 | 100 | -> | Plus |
2R | 9122622..9123161 | 161..702 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:23 Download gff for
BO06011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5009851..5009953 | 8..111 | 96 | -> | Plus |
arm_2R | 5010024..5010072 | 112..160 | 100 | -> | Plus |
arm_2R | 5010127..5010666 | 161..702 | 99 | | Plus |
BO06011.complete Sequence
712 bp (712 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630223
> BO06011.complete
GAAGTTATCAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTA
GTCCTCCTGCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGAC
CTGGAGCTCAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGA
ATTTGTCAAGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCG
ATGGCGAGGTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCC
AAGTACGCCGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGC
CCACATCGACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGG
TAAAGGACATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAAC
CCCCGATCGCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTT
TCTGCAGCAAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACG
TGTCCATCCACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAA
CGGGAAAAGTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTT
GTTGCCCGACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGA
CCCGCATCCTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGGCAAGC
TTTCTAGACCAT
BO06011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE13-RB | 681 | CG11784-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
GstE13-RA | 681 | CG11784-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE13-RB | 1061 | CG11784-RB | 230..907 | 17..694 | 3390 | 100 | Plus |
GstE13-RA | 862 | CG11784-RA | 31..708 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9122620..9123155 | 159..694 | 2680 | 100 | Plus |
2R | 25286936 | 2R | 9122354..9122448 | 17..111 | 475 | 100 | Plus |
2R | 25286936 | 2R | 9122519..9122567 | 112..160 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:32 has no hits.
BO06011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:03 Download gff for
BO06011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11784-RA | 1..681 | 17..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:46 Download gff for
BO06011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11784-RA | 54..745 | 8..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:49 Download gff for
BO06011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE13-RA | 31..708 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:04 Download gff for
BO06011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11784-RA | 54..745 | 8..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:33 Download gff for
BO06011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstE13-RA | 31..708 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:33 Download gff for
BO06011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9122519..9122567 | 112..160 | 100 | -> | Plus |
2R | 9122354..9122448 | 17..111 | 100 | -> | Plus |
2R | 9122622..9123155 | 161..696 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:49 Download gff for
BO06011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5009859..5009953 | 17..111 | 100 | -> | Plus |
arm_2R | 5010024..5010072 | 112..160 | 100 | -> | Plus |
arm_2R | 5010127..5010660 | 161..696 | 99 | | Plus |
BO06011.pep Sequence
Translation from 16 to 712
> BO06011.pep
MSKPTLYYALFSPPARACILVAKLIGLDLELKPVDFAKKEHLSEEFVKLN
PQHQIPVFVDSDGEVYVDSHAIVCFLVAKYAGNDQLYPRDLKRRAHIDHR
MHYENGVLFQVVKDIVARNIYGGEGEYNPRSLTLCHNAYSDLEHFLQQGS
FVVGNELSVADVSIHTTLVTLDLLIPVEREKYPQTKQWMERMDKLLPDNE
EINLKGARALQTRILSCMAENKAKSQASFLDH
BO06011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstE13-PB | 226 | CG11784-PB | 1..226 | 1..226 | 1178 | 100 | Plus |
GstE13-PA | 226 | CG11784-PA | 1..226 | 1..226 | 1178 | 100 | Plus |
GstE12-PC | 223 | CG16936-PC | 1..223 | 1..224 | 436 | 39.1 | Plus |
GstE12-PB | 223 | CG16936-PB | 1..223 | 1..224 | 436 | 39.1 | Plus |
GstE12-PD | 223 | CG16936-PD | 1..223 | 1..224 | 436 | 39.1 | Plus |