Clone BO06011 Report

Search the DGRC for BO06011

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG11784-RA
Protein status:BO06011.pep: validated full length
Sequenced Size:712

Clone Sequence Records

BO06011.3prime Sequence

710 bp (709 high quality bases) assembled on 2005-12-02

> BO06011.3prime
ATGGTCTAGAAAGCTTGCCTGGCTCTTCGCTTTGTTCTCGGCCATGCAGC
TCAGGATGCGGGTCTGCAGAGCCCGTGCACCCTTGAGGTTGATCTCCTCG
TTGTCGGGCAACAACTTATCCATGCGTTCCATCCATTGCTTAGTCTGCGG
GTACTTTTCCCGTTCCACTGGTATGAGCAGATCCAAGGTCACCAGAGTGG
TGTGGATGGACACGTCGGCAACGCTCAGTTCGTTGCCCACCACGAAACTT
CCTTGCTGCAGAAAGTGTTCCAAGTCGGAGTACGCATTGTGGCAGAGGGT
CAGCGATCGGGGGTTGTATTCTCCCTCGCCACCGTAAATGTTCCGAGCCA
CAATGTCCTTTACCACCTGAAATAGCACTCCGTTCTCGTAGTGCATGCGA
TGGTCGATGTGGGCTCTCCTTTTCAAATCCCGCGGATAGAGTTGGTCATT
CCCGGCGTACTTGGCTACCAGGAAGCACACGATGGCGTGACTGTCCACGT
AGACCTCGCCATCGCTGTCCACAAACACCGGGATCTGGTGCTGGGGGTTT
AGCTTGACAAATTCCTCGCTCAGGTGTTCCTTCTTGGCGAAGTCAACGGG
TTTGAGCTCCAGGTCCAGTCCAATAAGTTTGGCCACCAGGATGCATGCCC
TGGCAGGAGGACTAAAAAGGGCGTAGTACAGCGTTGGCTTCGACATGTCG
ACTGATAACT

BO06011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11784-PA 681 CG11784-RA 1..678 696..19 3390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..907 696..19 3390 100 Minus
GstE13-RA 862 CG11784-RA 31..708 696..19 3390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123155 554..19 2680 100 Minus
2R 25286936 2R 9122354..9122448 696..602 475 100 Minus
2R 25286936 2R 9122519..9122567 601..553 245 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:49:27 has no hits.

BO06011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:15 Download gff for BO06011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:07 Download gff for BO06011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 18..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:38 Download gff for BO06011.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..714 11..705 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:09 Download gff for BO06011.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..714 11..705 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:09 Download gff for BO06011.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9122346..9122448 602..705 96 -> Minus
2R 9122519..9122567 553..601 100 -> Minus
2R 9122622..9123161 11..552 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:38 Download gff for BO06011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009851..5009953 602..705 96 -> Minus
arm_2R 5010024..5010072 553..601 100 -> Minus
arm_2R 5010127..5010666 11..552 99   Minus

BO06011.5prime Sequence

710 bp (682 high quality bases) assembled on 2005-12-02

> BO06011.5prime
GAAGTTATCAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTA
GTCCTCCTGCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGAC
CTGGAGCTCAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGA
ATTTGTCAAGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCG
ATGGCGAGGTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCC
AAGTACGCCGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGC
CCACATCGACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGG
TAAAGGACATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAAC
CCCCGATCGCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTT
TCTGCAGCAAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACG
TGTCCATCCACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAA
CGGGAAAAGTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTT
GTTGCCCGACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGA
CCCGCATCCTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGGCAAGC
TTTCTAGACC

BO06011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11784-PA 681 CG11784-RA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..907 17..694 3390 100 Plus
GstE13-RA 862 CG11784-RA 31..708 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123155 159..694 2680 100 Plus
2R 25286936 2R 9122354..9122448 17..111 475 100 Plus
2R 25286936 2R 9122519..9122567 112..160 245 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:02:31 has no hits.

BO06011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:16 Download gff for BO06011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:08 Download gff for BO06011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11784-PA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:23 Download gff for BO06011.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..714 8..702 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:10 Download gff for BO06011.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 23..714 8..702 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:10 Download gff for BO06011.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9122346..9122448 8..111 96 -> Plus
2R 9122519..9122567 112..160 100 -> Plus
2R 9122622..9123161 161..702 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:23 Download gff for BO06011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009851..5009953 8..111 96 -> Plus
arm_2R 5010024..5010072 112..160 100 -> Plus
arm_2R 5010127..5010666 161..702 99   Plus

BO06011.complete Sequence

712 bp (712 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630223

> BO06011.complete
GAAGTTATCAGTCGACATGTCGAAGCCAACGCTGTACTACGCCCTTTTTA
GTCCTCCTGCCAGGGCATGCATCCTGGTGGCCAAACTTATTGGACTGGAC
CTGGAGCTCAAACCCGTTGACTTCGCCAAGAAGGAACACCTGAGCGAGGA
ATTTGTCAAGCTAAACCCCCAGCACCAGATCCCGGTGTTTGTGGACAGCG
ATGGCGAGGTCTACGTGGACAGTCACGCCATCGTGTGCTTCCTGGTAGCC
AAGTACGCCGGGAATGACCAACTCTATCCGCGGGATTTGAAAAGGAGAGC
CCACATCGACCATCGCATGCACTACGAGAACGGAGTGCTATTTCAGGTGG
TAAAGGACATTGTGGCTCGGAACATTTACGGTGGCGAGGGAGAATACAAC
CCCCGATCGCTGACCCTCTGCCACAATGCGTACTCCGACTTGGAACACTT
TCTGCAGCAAGGAAGTTTCGTGGTGGGCAACGAACTGAGCGTTGCCGACG
TGTCCATCCACACCACTCTGGTGACCTTGGATCTGCTCATACCAGTGGAA
CGGGAAAAGTACCCGCAGACTAAGCAATGGATGGAACGCATGGATAAGTT
GTTGCCCGACAACGAGGAGATCAACCTCAAGGGTGCACGGGCTCTGCAGA
CCCGCATCCTGAGCTGCATGGCCGAGAACAAAGCGAAGAGCCAGGCAAGC
TTTCTAGACCAT

BO06011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 681 CG11784-PB 1..678 17..694 3390 100 Plus
GstE13-RA 681 CG11784-PA 1..678 17..694 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-RB 1061 CG11784-RB 230..907 17..694 3390 100 Plus
GstE13-RA 862 CG11784-RA 31..708 17..694 3390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9122620..9123155 159..694 2680 100 Plus
2R 25286936 2R 9122354..9122448 17..111 475 100 Plus
2R 25286936 2R 9122519..9122567 112..160 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:34:32 has no hits.

BO06011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:03 Download gff for BO06011.complete
Subject Subject Range Query Range Percent Splice Strand
CG11784-RA 1..681 17..695 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:46 Download gff for BO06011.complete
Subject Subject Range Query Range Percent Splice Strand
CG11784-RA 54..745 8..702 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:49 Download gff for BO06011.complete
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 31..708 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:04 Download gff for BO06011.complete
Subject Subject Range Query Range Percent Splice Strand
CG11784-RA 54..745 8..702 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:33 Download gff for BO06011.complete
Subject Subject Range Query Range Percent Splice Strand
GstE13-RA 31..708 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:33 Download gff for BO06011.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9122519..9122567 112..160 100 -> Plus
2R 9122354..9122448 17..111 100 -> Plus
2R 9122622..9123155 161..696 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:49 Download gff for BO06011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5009859..5009953 17..111 100 -> Plus
arm_2R 5010024..5010072 112..160 100 -> Plus
arm_2R 5010127..5010660 161..696 99   Plus

BO06011.pep Sequence

Translation from 16 to 712

> BO06011.pep
MSKPTLYYALFSPPARACILVAKLIGLDLELKPVDFAKKEHLSEEFVKLN
PQHQIPVFVDSDGEVYVDSHAIVCFLVAKYAGNDQLYPRDLKRRAHIDHR
MHYENGVLFQVVKDIVARNIYGGEGEYNPRSLTLCHNAYSDLEHFLQQGS
FVVGNELSVADVSIHTTLVTLDLLIPVEREKYPQTKQWMERMDKLLPDNE
EINLKGARALQTRILSCMAENKAKSQASFLDH

BO06011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
GstE13-PB 226 CG11784-PB 1..226 1..226 1178 100 Plus
GstE13-PA 226 CG11784-PA 1..226 1..226 1178 100 Plus
GstE12-PC 223 CG16936-PC 1..223 1..224 436 39.1 Plus
GstE12-PB 223 CG16936-PB 1..223 1..224 436 39.1 Plus
GstE12-PD 223 CG16936-PD 1..223 1..224 436 39.1 Plus