Clone Sequence Records
BO06012.3prime Sequence
861 bp (688 high quality bases) assembled on 2005-12-02
> BO06012.3prime
ATGGTCTAGAAAGCTTGCTAGAAATGCCTCCAGTACGGGGGCCGCGATCA
GGCGCCAACTCTCCCGCCATCGCAGCTCCTGGAACTCCTGGATTTTGCGC
TGAAAACCAGCTCTTGTCTCCAGGATGCTGGGATTCTTTGGAAAATTTTC
GAACCAAATCCTCAGCTGCTCGGCCAGCTGAACATGGTCGCCAAACACGA
AGCCATTCTCGCCGTGCTTCACCAGCTCATCCAGGCACTTGAAATCGTAG
GCGCAGACAGGCAGCCCGCTGCCGAACATGTCGACCACCTTCATGGGCAG
GTCGAGCCCACTGGTGCTCCAGTGCAGACACACGCCCAGGTCGGCGCTGG
CCAGAACAGTGGGGTAGTCCTCGATCTCTAGCCAGGGCGTGATCACCGAC
ACCTTCTGCCATTGCAGCTTCTCGATCTCCGCCACATAGTGCTCCTTTTG
TGGCCCCTTTCCGGTGATGATACACAGCAGGGAAGGATAAACCAACGGCT
CTGCTTGCGCAGTCTCCTCGTAAGCTTGCAAAGCCTTAAGCAGTATACCG
AAGTCCTCGTCCGGCGTCCAACTGGTGCTGGAAACCAGCACGGCTTGTCG
CTGTGGTCTGTACTGCACAACACCGCTGGCCAGCTTTTGGGTAAGAGCGG
TGGCCTCCAGAACATCGGATTGTTCGGCGTCCTTGGCCTGNAACTGTGGG
TAGTCTTTGGCCAGCTTCAGGTACAGCTCGTGCTTGTGAGTCAAGTCGAT
GGGATGGAATTGCGCGGGCGCACGATCATACAGAACTTTGACAGGCCCAA
TGCCCCAGTTTTGCTGCAGATCCTCTTGCATGGCCCGCGTCACACAGAAG
TGTGTGTGTGC
BO06012.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-PA | 1341 | CG18012-RA | 496..1338 | 861..19 | 4196 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RC | 1516 | CG18012-RC | 492..1334 | 861..19 | 4204 | 99.9 | Minus |
CG18012-RA | 1607 | CG18012-RA | 583..1425 | 861..19 | 4204 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17809858..17810419 | 236..797 | 2799 | 99.8 | Plus |
3R | 32079331 | 3R | 17809583..17809800 | 19..236 | 1090 | 100 | Plus |
3R | 32079331 | 3R | 17810479..17810544 | 796..861 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:00:57 has no hits.
BO06012.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:17 Download gff for
BO06012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 496..1341 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:10 Download gff for
BO06012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 496..1341 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:28 Download gff for
BO06012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 583..1434 | 10..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:13 Download gff for
BO06012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 583..1434 | 10..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:13 Download gff for
BO06012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17809573..17809799 | 10..235 | 98 | <- | Plus |
3R | 17809858..17810418 | 236..796 | 99 | <- | Plus |
3R | 17810480..17810544 | 797..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:28 Download gff for
BO06012.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13635295..13635521 | 10..235 | 98 | <- | Plus |
arm_3R | 13635580..13636140 | 236..796 | 99 | <- | Plus |
arm_3R | 13636202..13636266 | 797..861 | 100 | | Plus |
BO06012.5prime Sequence
888 bp (712 high quality bases) assembled on 2005-12-02
> BO06012.5prime
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCAAAAGCTGGCCAGCGGT
GTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCAG
TTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCTT
ACGAGGAGACTGCGCAAGCAGAGCCGTTGGTTTTATCT
BO06012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-PA | 1341 | CG18012-RA | 1..717 | 17..733 | 3585 | 100 | Plus |
CG18012-PA | 1341 | CG18012-RA | 717..868 | 732..883 | 760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RA | 1607 | CG18012-RA | 88..955 | 17..883 | 4315 | 99.9 | Plus |
CG18012-RC | 1516 | CG18012-RC | 198..864 | 218..883 | 3295 | 99.7 | Plus |
CG18012-RC | 1516 | CG18012-RC | 88..201 | 17..130 | 570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17810479..17811039 | 577..17 | 2805 | 100 | Minus |
3R | 32079331 | 3R | 17810111..17810419 | 883..576 | 1495 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-13 00:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4593..4630 | 306..269 | 109 | 76.3 | Minus |
BO06012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:18 Download gff for
BO06012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:11 Download gff for
BO06012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-PA | 1..871 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:41 Download gff for
BO06012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 83..958 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:56 Download gff for
BO06012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 83..958 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:56 Download gff for
BO06012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17810106..17810418 | 577..888 | 99 | <- | Minus |
3R | 17810480..17811044 | 9..576 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:41 Download gff for
BO06012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13635828..13636140 | 577..888 | 99 | <- | Minus |
arm_3R | 13636202..13636766 | 9..576 | 99 | | Minus |
BO06012.complete Sequence
1372 bp (1372 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630224
> BO06012.complete
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGG
TGTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCA
GTTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCT
TACGAGGAGACTGCGCAAGCAGAGCCGTTGGTTTATCCTTCCCTGCTGTG
TATCATCACCGGAAAGGGGCCACAAAAGGAGCACTATGTGGCGGAGATCG
AGAAGCTGCAATGGCAGAAGGTGTCGGTGATCACGCCCTGGCTAGAGATC
GAGGACTACCCCACTGTTCTGGCCAGCGCCGACCTGGGCGTGTGTCTGCA
CTGGAGCACCAGTGGGCTCGACCTGCCCATGAAGGTGGTCGACATGTTCG
GCAGCGGGCTGCCTGTCTGCGCCTACGATTTCAAGTGCCTGGATGAGCTG
GTGAAGCACGGCGAGAATGGCTTCGTGTTTGGCGACCATGTTCAGCTGGC
CGAGCAGCTGAGGATTTGGTTCGAAAATTTTCCAAAGAATCCCAGCATCC
TGGAGACAAGAGCTGGTTTTCAGCGCAAAATCCAGGAGTTCCAGGAGCTG
CGATGGCGGGAGAGTTGGCGCCTGATCGCGGCCCCCGTACTGGAGGCATT
TCTAGCAAGCTTTCTAGACCAT
BO06012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RA | 1341 | CG18012-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
CG18012-RC | 117 | CG18012-PC | 1..114 | 17..130 | 570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-RA | 1607 | CG18012-RA | 88..1425 | 17..1354 | 6690 | 100 | Plus |
CG18012-RC | 1516 | CG18012-RC | 198..1334 | 218..1354 | 5670 | 99.9 | Plus |
CG18012-RC | 1516 | CG18012-RC | 88..201 | 17..130 | 570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17809858..17810419 | 1137..576 | 2810 | 100 | Minus |
3R | 32079331 | 3R | 17810479..17811039 | 577..17 | 2805 | 100 | Minus |
3R | 32079331 | 3R | 17809583..17809800 | 1354..1137 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:06:23 has no hits.
BO06012.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:05 Download gff for
BO06012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 1..1341 | 17..1355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:48 Download gff for
BO06012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 89..1440 | 9..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:18 Download gff for
BO06012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 88..1425 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:05 Download gff for
BO06012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 89..1440 | 9..1363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:06 Download gff for
BO06012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18012-RA | 88..1425 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:06 Download gff for
BO06012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17809581..17809799 | 1138..1356 | 99 | <- | Minus |
3R | 17809858..17810418 | 577..1137 | 100 | <- | Minus |
3R | 17810480..17811039 | 17..576 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:18 Download gff for
BO06012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13635303..13635521 | 1138..1356 | 99 | <- | Minus |
arm_3R | 13635580..13636140 | 577..1137 | 100 | <- | Minus |
arm_3R | 13636202..13636761 | 17..576 | 100 | | Minus |
BO06012.pep Sequence
Translation from 16 to 1372
> BO06012.pep
MAEVLPKKRNACVIVLGDIGRSPRMQYHAQSLLEENYHVDMIGYLETRPL
EELTQHPRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSLLMALISIGRPS
FLLVQNPPGIPTLIVCYLYCAVTRTKLAIDWHNYTYTVLALGMSKGEQSP
LIRLVRRLERYFGSKAHTHFCVTRAMQEDLQQNWGIGPVKVLYDRAPAQF
HPIDLTHKHELYLKLAKDYPQFQAKDAEQSDVLEATALTQKLASGVVQYR
PQRQAVLVSSTSWTPDEDFGILLKALQAYEETAQAEPLVYPSLLCIITGK
GPQKEHYVAEIEKLQWQKVSVITPWLEIEDYPTVLASADLGVCLHWSTSG
LDLPMKVVDMFGSGLPVCAYDFKCLDELVKHGENGFVFGDHVQLAEQLRI
WFENFPKNPSILETRAGFQRKIQEFQELRWRESWRLIAAPVLEAFLASFL
DH
BO06012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18012-PA | 446 | CG18012-PA | 1..446 | 1..446 | 2355 | 100 | Plus |
CG18012-PC | 38 | CG18012-PC | 1..38 | 1..38 | 199 | 100 | Plus |