Clone BO06012 Report

Search the DGRC for BO06012

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG18012-RA
Protein status:BO06012.pep: validated full length
Sequenced Size:1372

Clone Sequence Records

BO06012.3prime Sequence

861 bp (688 high quality bases) assembled on 2005-12-02

> BO06012.3prime
ATGGTCTAGAAAGCTTGCTAGAAATGCCTCCAGTACGGGGGCCGCGATCA
GGCGCCAACTCTCCCGCCATCGCAGCTCCTGGAACTCCTGGATTTTGCGC
TGAAAACCAGCTCTTGTCTCCAGGATGCTGGGATTCTTTGGAAAATTTTC
GAACCAAATCCTCAGCTGCTCGGCCAGCTGAACATGGTCGCCAAACACGA
AGCCATTCTCGCCGTGCTTCACCAGCTCATCCAGGCACTTGAAATCGTAG
GCGCAGACAGGCAGCCCGCTGCCGAACATGTCGACCACCTTCATGGGCAG
GTCGAGCCCACTGGTGCTCCAGTGCAGACACACGCCCAGGTCGGCGCTGG
CCAGAACAGTGGGGTAGTCCTCGATCTCTAGCCAGGGCGTGATCACCGAC
ACCTTCTGCCATTGCAGCTTCTCGATCTCCGCCACATAGTGCTCCTTTTG
TGGCCCCTTTCCGGTGATGATACACAGCAGGGAAGGATAAACCAACGGCT
CTGCTTGCGCAGTCTCCTCGTAAGCTTGCAAAGCCTTAAGCAGTATACCG
AAGTCCTCGTCCGGCGTCCAACTGGTGCTGGAAACCAGCACGGCTTGTCG
CTGTGGTCTGTACTGCACAACACCGCTGGCCAGCTTTTGGGTAAGAGCGG
TGGCCTCCAGAACATCGGATTGTTCGGCGTCCTTGGCCTGNAACTGTGGG
TAGTCTTTGGCCAGCTTCAGGTACAGCTCGTGCTTGTGAGTCAAGTCGAT
GGGATGGAATTGCGCGGGCGCACGATCATACAGAACTTTGACAGGCCCAA
TGCCCCAGTTTTGCTGCAGATCCTCTTGCATGGCCCGCGTCACACAGAAG
TGTGTGTGTGC

BO06012.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-PA 1341 CG18012-RA 496..1338 861..19 4196 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RC 1516 CG18012-RC 492..1334 861..19 4204 99.9 Minus
CG18012-RA 1607 CG18012-RA 583..1425 861..19 4204 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17809858..17810419 236..797 2799 99.8 Plus
3R 32079331 3R 17809583..17809800 19..236 1090 100 Plus
3R 32079331 3R 17810479..17810544 796..861 330 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:00:57 has no hits.

BO06012.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:17 Download gff for BO06012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 496..1341 18..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:10 Download gff for BO06012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 496..1341 18..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:28 Download gff for BO06012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 583..1434 10..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:13 Download gff for BO06012.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 583..1434 10..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:13 Download gff for BO06012.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17809573..17809799 10..235 98 <- Plus
3R 17809858..17810418 236..796 99 <- Plus
3R 17810480..17810544 797..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:28 Download gff for BO06012.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13635295..13635521 10..235 98 <- Plus
arm_3R 13635580..13636140 236..796 99 <- Plus
arm_3R 13636202..13636266 797..861 100   Plus

BO06012.5prime Sequence

888 bp (712 high quality bases) assembled on 2005-12-02

> BO06012.5prime
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCAAAAGCTGGCCAGCGGT
GTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCAG
TTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCTT
ACGAGGAGACTGCGCAAGCAGAGCCGTTGGTTTTATCT

BO06012.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-PA 1341 CG18012-RA 1..717 17..733 3585 100 Plus
CG18012-PA 1341 CG18012-RA 717..868 732..883 760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RA 1607 CG18012-RA 88..955 17..883 4315 99.9 Plus
CG18012-RC 1516 CG18012-RC 198..864 218..883 3295 99.7 Plus
CG18012-RC 1516 CG18012-RC 88..201 17..130 570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17810479..17811039 577..17 2805 100 Minus
3R 32079331 3R 17810111..17810419 883..576 1495 99.7 Minus
Blast to na_te.dros performed 2015-02-13 00:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 4593..4630 306..269 109 76.3 Minus

BO06012.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:18 Download gff for BO06012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 1..871 17..888 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:11 Download gff for BO06012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-PA 1..871 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:41 Download gff for BO06012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 83..958 9..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:56 Download gff for BO06012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 83..958 9..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:56 Download gff for BO06012.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17810106..17810418 577..888 99 <- Minus
3R 17810480..17811044 9..576 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:41 Download gff for BO06012.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13635828..13636140 577..888 99 <- Minus
arm_3R 13636202..13636766 9..576 99   Minus

BO06012.complete Sequence

1372 bp (1372 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630224

> BO06012.complete
GAAGTTATCAGTCGACATGGCGGAAGTGCTGCCCAAGAAGCGCAACGCCT
GCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGCATGCAGTACCAT
GCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACATGATTGGGTATCT
GGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCACGTTGCCGAATCC
ACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCCAAACTGCGCCTG
CTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGATGGCTCTCATCTC
CATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGCCCGGCATTCCCA
CGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGAACCAAGCTGGCC
ATCGATTGGCACAACTACACGTACACAGTGCTGGCATTGGGAATGTCGAA
GGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGACTGGAGCGATACT
TCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGGGCCATGCAAGAG
GATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGTTCTGTATGATCG
TGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACAAGCACGAGCTGT
ACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCCAAGGACGCCGAA
CAATCCGATGTTCTGGAGGCCACCGCTCTTACCCAAAAGCTGGCCAGCGG
TGTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGGTTTCCAGCACCA
GTTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAGGCTTTGCAAGCT
TACGAGGAGACTGCGCAAGCAGAGCCGTTGGTTTATCCTTCCCTGCTGTG
TATCATCACCGGAAAGGGGCCACAAAAGGAGCACTATGTGGCGGAGATCG
AGAAGCTGCAATGGCAGAAGGTGTCGGTGATCACGCCCTGGCTAGAGATC
GAGGACTACCCCACTGTTCTGGCCAGCGCCGACCTGGGCGTGTGTCTGCA
CTGGAGCACCAGTGGGCTCGACCTGCCCATGAAGGTGGTCGACATGTTCG
GCAGCGGGCTGCCTGTCTGCGCCTACGATTTCAAGTGCCTGGATGAGCTG
GTGAAGCACGGCGAGAATGGCTTCGTGTTTGGCGACCATGTTCAGCTGGC
CGAGCAGCTGAGGATTTGGTTCGAAAATTTTCCAAAGAATCCCAGCATCC
TGGAGACAAGAGCTGGTTTTCAGCGCAAAATCCAGGAGTTCCAGGAGCTG
CGATGGCGGGAGAGTTGGCGCCTGATCGCGGCCCCCGTACTGGAGGCATT
TCTAGCAAGCTTTCTAGACCAT

BO06012.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RA 1341 CG18012-PA 1..1338 17..1354 6690 100 Plus
CG18012-RC 117 CG18012-PC 1..114 17..130 570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RA 1607 CG18012-RA 88..1425 17..1354 6690 100 Plus
CG18012-RC 1516 CG18012-RC 198..1334 218..1354 5670 99.9 Plus
CG18012-RC 1516 CG18012-RC 88..201 17..130 570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17809858..17810419 1137..576 2810 100 Minus
3R 32079331 3R 17810479..17811039 577..17 2805 100 Minus
3R 32079331 3R 17809583..17809800 1354..1137 1090 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:06:23 has no hits.

BO06012.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:28:05 Download gff for BO06012.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 1..1341 17..1355 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:48 Download gff for BO06012.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 89..1440 9..1363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:18 Download gff for BO06012.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 88..1425 17..1356 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:28:05 Download gff for BO06012.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 89..1440 9..1363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:06 Download gff for BO06012.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 88..1425 17..1356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:06 Download gff for BO06012.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17809581..17809799 1138..1356 99 <- Minus
3R 17809858..17810418 577..1137 100 <- Minus
3R 17810480..17811039 17..576 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:18 Download gff for BO06012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13635303..13635521 1138..1356 99 <- Minus
arm_3R 13635580..13636140 577..1137 100 <- Minus
arm_3R 13636202..13636761 17..576 100   Minus

BO06012.pep Sequence

Translation from 16 to 1372

> BO06012.pep
MAEVLPKKRNACVIVLGDIGRSPRMQYHAQSLLEENYHVDMIGYLETRPL
EELTQHPRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSLLMALISIGRPS
FLLVQNPPGIPTLIVCYLYCAVTRTKLAIDWHNYTYTVLALGMSKGEQSP
LIRLVRRLERYFGSKAHTHFCVTRAMQEDLQQNWGIGPVKVLYDRAPAQF
HPIDLTHKHELYLKLAKDYPQFQAKDAEQSDVLEATALTQKLASGVVQYR
PQRQAVLVSSTSWTPDEDFGILLKALQAYEETAQAEPLVYPSLLCIITGK
GPQKEHYVAEIEKLQWQKVSVITPWLEIEDYPTVLASADLGVCLHWSTSG
LDLPMKVVDMFGSGLPVCAYDFKCLDELVKHGENGFVFGDHVQLAEQLRI
WFENFPKNPSILETRAGFQRKIQEFQELRWRESWRLIAAPVLEAFLASFL
DH

BO06012.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-PA 446 CG18012-PA 1..446 1..446 2355 100 Plus
CG18012-PC 38 CG18012-PC 1..38 1..38 199 100 Plus