Clone Sequence Records
BO06013.3prime Sequence
729 bp (700 high quality bases) assembled on 2005-12-02
> BO06013.3prime
ATGGTCTAGAAAGCTTGCATGCTGCGACCATTGGATGGTCTTTAGGTCGA
TGCCCTCTTGGACCATCTCCCACAGCGGCGACATCTCGCGCAGTCGCTCC
ACATGCTTGATGCACTTATCGGCGGTGTAGTCCACCTCCTCGACGGTGGT
AAAGCGCCCGATGCCAAAGCGTATGGAGCTGTGGGCAAGATCCTCGTCGG
TGCCGATGGCACGCAGAACATAGGAGGGCTCCAGGGAGGCGGAGGTGCAG
GCGGACCCACTGCTCAGGGCCACGTCCTTAAGAGCCATCAGTAGTGACTC
GCCCTCGACATAGGCAAACGACAAATTCAGGCAACCATTGTATGTGGCTT
TGGCATCACCATTCCTGATGACATGCGGCAAGGCACTTGAAATCCTGTCC
AGCAGGCGATTGGATAGAAAGTCCACCCATTTCTTGTCGTAGTCCATCTC
ACGCAAAGAAAGTTCCGCAGCAGCTCCCAATCCCACGGCGAGCGGGGCTG
GAACCGTTCCGCTCCTTAGGCCACGCTCCTGGCCGCCGCCACTTTGGATG
GGCTCGAGGCGAACCCTCGGCCTTCGTCGGACATACAGGGCGCCTACACC
CTTTGGGCCGTAGATTTTGTGGCCGGATATAGACATCAGGTCAATGTTCA
TGGCGTTAACGTCCAGCGGGACCTTTCCCACCGCCTGAGCGGCATCCGTG
TGAAAGAATACTCGGCGAGACCGGCACAG
BO06013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12264-PA | 1389 | CG12264-RA | 676..1386 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12264-RA | 1533 | CG12264-RA | 747..1457 | 729..19 | 3555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12000458..12001168 | 729..19 | 3555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:17:38 has no hits.
BO06013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:18 Download gff for
BO06013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-PA | 676..1389 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:12 Download gff for
BO06013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-PA | 676..1389 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:33 Download gff for
BO06013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 747..1460 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:48 Download gff for
BO06013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 747..1460 | 15..729 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:48 Download gff for
BO06013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12000458..12001171 | 15..729 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:33 Download gff for
BO06013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12000458..12001171 | 15..729 | 99 | | Minus |
BO06013.5prime Sequence
758 bp (646 high quality bases) assembled on 2005-12-02
> BO06013.5prime
GAAGTTATCAGTCGACATGCAAAAAGTGCTGGGACGCATCCAGGCGCAGG
TCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGACACGAG
GCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAAGAATT
CCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGAGGGTA
GACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCACGTGTA
TTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCCCCACTC
CCGTACCCACGCCTACGGTTGGGAAACAGAGTCCGCTGTAGAAAAGGCCC
GCGAGCAGGTGGCCACCCTGATTGGCGCCGATCCCAAGGAGATCATCTTC
ACATCCGGCGCCACCGAGTCGAATAATATCGCAGTAAAGGGTGTTGCCCG
TTTCTACGGCACTAAGAAGCGACACGTGATCACCACCCAGACGGAGCACA
AGTGCGTGCTGGACTCTTGTCGTGCTTTAGAGAACGAGGGCTTTAAAGTC
ACGTACCTGCCAGTGCTGGCCAACGGACTCATCGACCTCCAGCAACTGGA
GGAAACCATCACATCGGAGACCTCGCTGGTGTCCATTATGACGGTGAATA
ACGAAATCGGCGTACGGCAACCCGTCGATGAGATTGGCAAACTGTGCCGG
TCTCGCCGAGTATTCTTTCACACGGATGCCGCTCAAGCGGTGGGAAAGGT
CCCGCTGG
BO06013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12264-PA | 1389 | CG12264-RA | 1..742 | 17..758 | 3685 | 99.8 | Plus |
| CG31864-PA | 372 | CG31864-RA | 1..277 | 17..293 | 1385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:40:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12264-RA | 1533 | CG12264-RA | 72..813 | 17..758 | 3695 | 99.9 | Plus |
| Qtzl-RC | 926 | CG31864-RC | 75..351 | 17..293 | 1385 | 100 | Plus |
| Qtzl-RA | 672 | CG31864-RA | 75..351 | 17..293 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11999911..12000524 | 145..758 | 3055 | 99.8 | Plus |
| 2L | 23513712 | 2L | 11996000..11996148 | 145..293 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 11995814..11995943 | 17..146 | 650 | 100 | Plus |
| 2L | 23513712 | 2L | 11999725..11999854 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:40:26 has no hits.
BO06013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:19 Download gff for
BO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-PA | 1..742 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:14 Download gff for
BO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-PA | 1..742 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:52 Download gff for
BO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 65..813 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:11 Download gff for
BO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 65..813 | 9..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:11 Download gff for
BO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11999718..11999854 | 9..146 | 97 | -> | Plus |
| 2L | 11999913..12000524 | 147..758 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:52 Download gff for
BO06013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11999718..11999854 | 9..146 | 97 | -> | Plus |
| arm_2L | 11999913..12000524 | 147..758 | 99 | | Plus |
BO06013.complete Sequence
1420 bp assembled on 2006-12-18
GenBank Submission: FJ630225
> BO06013.complete
GAAGTTATCAGTCGACATGCAAAAAGTGCTGGGACGCATCCAGGCGCAGG
TCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGACACGAG
GCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAAGAATT
CCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGAGGGTA
GACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCACGTGTA
TTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCCCCACTC
CCGTACCCACGCCTACGGTTGGGAAACAGAGTCCGCTGTAGAAAAGGCCC
GCGAGCAGGTGGCCACCCTGATTGGCGCCGATCCCAAGGAGATCATCTTC
ACATCCGGCGCCACCGAGTCGAATAATATCGCAGTAAAGGGTGTTGCCCG
TTTCTACGGCACTAAGAAGCGACACGTGATCACCACCCAGACGGAGCACA
AGTGCGTGCTGGACTCTTGTCGTGCTTTAGAGAACGAGGGCTTTAAAGTC
ACGTACCTGCCAGTGCTGGCCAACGGACTCATCGACCTCCAGCAACTGGA
GGAAACCATCACATCGGAGACCTCGCTGGTGTCCATTATGACGGTGAATA
ACGAAATCGGCGTACGGCAACCCGTCGATGAGATTGGCAAACTGTGCCGG
TCTCGCCGAGTATTCTTTCACACGGATGCCGCTCAGGCGGTGGGAAAGGT
CCCGCTGGACGTTAACGCCATGAACATTGACCTGATGTCTATATCCGGCC
ACAAAATCTACGGCCCAAAGGGTGTAGGCGCCCTGTATGTCCGACGAAGG
CCGAGGGTTCGCCTCGAGCCCATCCAAAGTGGCGGCGGCCAGGAGCGTGG
CCTAAGGAGCGGAACGGTTCCAGCCCCGCTCGCCGTGGGATTGGGAGCTG
CTGCGGAACTTTCTTTGCGTGAGATGGACTACGACAAGAAATGGGTGGAC
TTTCTATCCAATCGCCTGCTGGACAGGATTTCAAGTGCCTTGCCGCATGT
CATCAGGAATGGTGATGCCAAAGCCACATACAATGGTTGCCTGAATTTGT
CGTTTGCCTATGTCGAGGGCGAGTCACTACTGATGGCTCTTAAGGACGTG
GCCCTGAGCAGTGGGTCCGCCTGCACCTCCGCCTCCCTGGAGCCCTCCTA
TGTTCTGCGTGCCATCGGCACCGACGAGGATCTTGCCCACAGCTCCATAC
GCTTTGGCATCGGGCGCTTTACCACCGTCGAGGAGGTGGACTACACCGCC
GATAAGTGCATCAAGCATGTGGAGCGACTGCGCGAGATGTCGCCGCTGTG
GGAGATGGTCCAAGAGGGCATCGACCTAAAGACCATCCAATGGTCGCAGC
ATGCAAGCTTTCTAGACCAT
BO06013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12264-RA | 1389 | CG12264-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| Qtzl-RC | 372 | CG31864-PC | 1..277 | 17..293 | 1385 | 100 | Plus |
| Qtzl-RA | 372 | CG31864-PA | 1..277 | 17..293 | 1385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12264-RA | 1533 | CG12264-RA | 72..1457 | 17..1402 | 6930 | 100 | Plus |
| Qtzl-RC | 926 | CG31864-RC | 75..351 | 17..293 | 1385 | 100 | Plus |
| Qtzl-RA | 672 | CG31864-RA | 75..351 | 17..293 | 1385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11999911..12001168 | 145..1402 | 6290 | 100 | Plus |
| 2L | 23513712 | 2L | 11996000..11996148 | 145..293 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 11995814..11995943 | 17..146 | 650 | 100 | Plus |
| 2L | 23513712 | 2L | 11999725..11999854 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:43:54 has no hits.
BO06013.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:24 Download gff for
BO06013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 1..1389 | 17..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:43 Download gff for
BO06013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 72..1457 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:09 Download gff for
BO06013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 72..1457 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:25 Download gff for
BO06013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 65..1460 | 9..1406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:50 Download gff for
BO06013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12264-RA | 72..1457 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:50 Download gff for
BO06013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11999725..11999854 | 17..146 | 100 | -> | Plus |
| 2L | 11999913..12001168 | 147..1404 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:09 Download gff for
BO06013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11999725..11999854 | 17..146 | 100 | -> | Plus |
| arm_2L | 11999913..12001168 | 147..1404 | 99 | | Plus |
BO06013.pep Sequence
Translation from 16 to 1420
> BO06013.pep
MQKVLGRIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQV
RFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNPHSRTHAY
GWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVKGVARFYGTK
KRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLANGLIDLQQLEETITS
ETSLVSIMTVNNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVPLDVN
AMNIDLMSISGHKIYGPKGVGALYVRRRPRVRLEPIQSGGGQERGLRSGT
VPAPLAVGLGAAAELSLREMDYDKKWVDFLSNRLLDRISSALPHVIRNGD
AKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAI
GTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQE
GIDLKTIQWSQHASFLDH
BO06013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12264-PA | 462 | CG12264-PA | 1..462 | 1..462 | 2357 | 100 | Plus |
| Qtzl-PC | 123 | CG31864-PC | 1..92 | 1..92 | 462 | 100 | Plus |
| Qtzl-PA | 123 | CG31864-PA | 1..92 | 1..92 | 462 | 100 | Plus |
