Clone Sequence Records
BO06014.3prime Sequence
923 bp (723 high quality bases) assembled on 2005-12-02
> BO06014.3prime
ATGGTCTAGAAAGCTTGCGAGCTTCATCACATCCCAAGGATCGTCCATAT
AGTGCAGGATGGCTTTGTCGTGCAGTCTTTCGCCAAAAACCTCCTTAAGC
AGGCGTAGAACGCATTCCTCAATGAATGCCACCTGATCCTGGGGGCAGTA
GTCATCTTGAGCGGAATGGGCCATTGTAATGGCCACTGGAGGAACTGGCA
GGCGCTGTAAGAAACGCTTGAAGTTTGCAAAGTACGTTTCCAACTCTTCG
GCGATGCTGATGTGGTGGGGCAAGCCATTATTATCGGTGGTGCTGCCCGA
ATCGAAGATCAAATGCCAGTCGATTTCATCGTCTGGATATTTCTCCTGCA
GCTGATCGGCCAGTTTCACAATCTTGGCGTACACTTCGGGCGTGACCACG
GTCTCGTCCGGCTTTTCCAGTCCCTCGAAATTGCGCTCCTCCTCCAGATG
CCAGAAAATCGTCTTCAGTGCATCCAACTGAGTCTGTCGCCTCTCTGCCG
TGGCCAAATAATCTGCTATAGTAGCCGTGCCCGACTTCTTCACCTTCTCC
ACGCTTTCGAAGTGGAAGATCTCCTTTAGCTGATTGTAGCAATCGGCATC
CTTGTATATTTCCAAGAAGGGGTTGGAGGTGCTGAAAAAGTCGAGGTCTA
TGTCCAGCACGAATCCCTTGGCGTCCTTCTCCGTTAGGAATTCGTTCGGA
TTGAGGCTTTCGTTGTCTGCATCGTGAACCTGCAGCTCCACGCTCTTGGC
ATCCTGCAGATCCTCCGTAGTGCAGTAGTTGCCGTCGGCAATAAAGTAGT
CCAACGGACAGTCCACTCCAATGCGATCGTCCTTTTGTCAACCTTAAAGT
CGTGCCTGCCAGTGGGCAGCTGCTGGCACATGAGTTCTTCAGCCACACGA
CGCGGTTTGAATGTCCTGCATAA
BO06014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6818-PA | 1413 | MESR6-RA | 590..1410 | 839..19 | 4105 | 100 | Minus |
CG6818-PA | 1413 | MESR6-RA | 549..589 | 879..839 | 205 | 100 | Minus |
CG6818-PA | 1413 | MESR6-RA | 504..548 | 923..879 | 175 | 95.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR6-RA | 1749 | CG6818-RA | 644..1550 | 923..19 | 4455 | 99.6 | Minus |
MESR6-RB | 1791 | CG6818-RB | 693..1592 | 916..19 | 4420 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19093661..19094561 | 917..19 | 4375 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:03:01 has no hits.
BO06014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:20 Download gff for
BO06014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-PA | 506..1413 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:15 Download gff for
BO06014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6818-PA | 506..1413 | 15..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:28 Download gff for
BO06014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 644..1562 | 5..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:14 Download gff for
BO06014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 644..1562 | 5..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:14 Download gff for
BO06014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19093661..19094573 | 5..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:28 Download gff for
BO06014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19086761..19087673 | 5..917 | 99 | | Minus |
BO06014.5prime Sequence
872 bp (725 high quality bases) assembled on 2005-12-02
> BO06014.5prime
GAAGTTATCAGTCGACATGGAATCGGATACGCTGGACCAGGAGAGTGCCG
CGGCTGCTCTAAAAAAACTATCGCCAAGTGAAAGTCCCGAAAGTTCGAAG
AAATGGGAGCCGACTTCGGGAGAGTGGGTTGCGGCGGGTGGGGGAGAAGA
GGCGCCGCCAACAAAGAGACAAAAGACTGCAGACGAAAAGGAGGAGAATC
GGGAGGAAGACGAGGATAGCGAGGAGAGCGTTGATGAGGAGGAGGATGAT
GGCGAGGGCATCGTCCAGATTGGCGGCACCATCAGCCCAAGGCATTTCCA
GCGCATCCCCGTCTTTATCGTCGACTACCACAACGATGTGCTGGAGTTCA
TCTACCGCTGCTTTGCCACCCGCCACCTTCCGCTGCAGAACAACACCCTT
GTCCACTTCGACTCGCATCCGGATCTGGTCATTCCACGGCACATTGCCGC
CAGTTCCACCTACCAAAAGGAAACCATGTTAAATGAGCTTAGCATCGAGA
ACTGGATCATGCCCACACTTTATGCAGGACATTTCAACCGCGTCGTGTGG
CTGAAGAACTCATGGTGCCAGCAGCTGCCCACTGGCAGGCACGACTTTAA
GGTTGGACAAAAGGACGATCGCATTGGAGTGGACTGTCCGTTGGACTACT
TTATTGCCGACGGCAACTACTGCACTACGGAGGATCTGCAGGATGCCAAG
AGCGTGGAGCTGCAGGTTCACGATGCAGACAACGAAAGCCTCAATCCGAA
CGAATTCCTAACGGAGAAGGACGCCAAGGGATTCGTGCTGGACATAGACC
TCGACTTTTTCAGCACCTCCAACCCCTTTCTTGGAATATACAGGGATGCC
GATTGCTACAATCAGCTAAAGG
BO06014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6818-PA | 1413 | MESR6-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
CG6818-PA | 1413 | MESR6-RA | 819..856 | 835..872 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR6-RA | 1749 | CG6818-RA | 141..996 | 17..872 | 4220 | 99.6 | Plus |
MESR6-RB | 1791 | CG6818-RB | 141..651 | 17..527 | 2555 | 100 | Plus |
MESR6-RB | 1791 | CG6818-RB | 693..1038 | 527..872 | 1670 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19092810..19093321 | 17..528 | 2560 | 100 | Plus |
3L | 28110227 | 3L | 19093661..19094007 | 526..872 | 1660 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:49:03 has no hits.
BO06014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:22 Download gff for
BO06014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:16 Download gff for
BO06014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6818-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:01 Download gff for
BO06014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 135..996 | 10..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:11:12 Download gff for
BO06014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 135..996 | 10..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:11:12 Download gff for
BO06014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19092804..19093320 | 10..527 | 99 | -> | Plus |
3L | 19093663..19094007 | 528..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:01 Download gff for
BO06014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19085904..19086420 | 10..527 | 99 | -> | Plus |
arm_3L | 19086763..19087107 | 528..872 | 99 | | Plus |
BO06014.complete Sequence
1444 bp (1444 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630226
> BO06014.complete
GAAGTTATCAGTCGACATGGAATCGGATACGCTGGACCAGGAGAGTGCCG
CGGCTGCTCTAAAAAAACTATCGCCAAGTGAAAGTCCCGAAAGTTCGAAG
AAATGGGAGCCGACTTCGGGAGAGTGGGTTGCGGCGGGTGGGGGAGAAGA
GGCGCCGCCAACAAAGAGACAAAAGACTGCAGACGAAAAGGAGGAGAATC
GGGAGGAAGACGAGGATAGCGAGGAGAGCGTTGATGAGGAGGAGGATGAT
GGCGAGGGCATCGTCCAGATTGGCGGCACCATCAGCCCAAGGCATTTCCA
GCGCATCCCCGTCTTTATCGTCGACTACCACAACGATGTGCTGGAGTTCA
TCTACCGCTGCTTTGCCACCCGCCACCTTCCGCTGCAGAACAACACCCTT
GTCCACTTCGACTCGCATCCGGATCTGGTCATTCCACGGCACATTGCCGC
CAGTTCCACCTACCAAAAGGAAACCATGTTAAATGAGCTTAGCATCGAGA
ACTGGATCATGCCCACACTTTATGCAGGACATTTCAACCGCGTCGTGTGG
CTGAAGAACTCATGGTGCCAGCAGCTGCCCACTGGCAGGCACGACTTTAA
GGTTGGACAAAAGGACGATCGCATTGGAGTGGACTGTCCGTTGGACTACT
TTATTGCCGACGGCAACTACTGCACTACGGAGGATCTGCAGGATGCCAAG
AGCGTGGAGCTGCAGGTTCACGATGCAGACAACGAAAGCCTCAATCCGAA
CGAATTCCTAACGGAGAAGGACGCCAAGGGATTCGTGCTGGACATAGACC
TCGACTTTTTCAGCACCTCCAACCCCTTCTTGGAAATATACAAGGATGCC
GATTGCTACAATCAGCTAAAGGAGATCTTCCACTTCGAAAGCGTGGAGAA
GGTGAAGAAGTCGGGCACGGCTACTATAGCAGATTATTTGGCCACGGCAG
AGAGGCGACAGACTCAGTTGGATGCACTGAAGACGATTTTCTGGCATCTG
GAGGAGGAGCGCAATTTCGAGGGACTGGAAAAGCCGGACGAGACCGTGGT
CACGCCCGAAGTGTACGCCAAGATTGTGAAACTGGCCGATCAGCTGCAGG
AGAAATATCCAGACGATGAAATCGACTGGCATTTGATCTTCGATTCGGGC
AGCACCACCGATAATAATGGCTTGCCCCACCACATCAGCATCGCCGAAGA
GTTGGAAACGTACTTTGCAAACTTCAAGCGTTTCTTACAGCGCCTGCCAG
TTCCTCCAGTGGCCATTACAATGGCCCATTCCGCTCAAGATGACTACTGC
CCCCAGGATCAGGTGGCATTCATTGAGGAATGCGTTCTACGCCTGCTTAA
GGAGGTTTTTGGCGAAAGACTGCACGACAAAGCCATCCTGCACTATATGG
ACGATCCTTGGGATGTGATGAAGCTCGCAAGCTTTCTAGACCAT
BO06014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR6-RA | 1413 | CG6818-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
MESR6-RB | 1455 | CG6818-PB | 553..1452 | 527..1426 | 4500 | 100 | Plus |
MESR6-RB | 1455 | CG6818-PB | 1..511 | 17..527 | 2555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR6-RA | 1749 | CG6818-RA | 141..1550 | 17..1426 | 7050 | 100 | Plus |
MESR6-RB | 1791 | CG6818-RB | 693..1592 | 527..1426 | 4500 | 100 | Plus |
MESR6-RB | 1791 | CG6818-RB | 141..651 | 17..527 | 2555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19093661..19094561 | 526..1426 | 4505 | 100 | Plus |
3L | 28110227 | 3L | 19092810..19093321 | 17..528 | 2560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:12:16 has no hits.
BO06014.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:50 Download gff for
BO06014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 1..1413 | 17..1430 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:26 Download gff for
BO06014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 133..1560 | 10..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:38 Download gff for
BO06014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 141..1550 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:50 Download gff for
BO06014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 133..1560 | 10..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:12 Download gff for
BO06014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MESR6-RA | 141..1550 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:12 Download gff for
BO06014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19092810..19093320 | 17..527 | 100 | -> | Plus |
3L | 19093663..19094561 | 528..1428 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:38 Download gff for
BO06014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19085910..19086420 | 17..527 | 100 | -> | Plus |
arm_3L | 19086763..19087661 | 528..1428 | 99 | | Plus |
BO06014.pep Sequence
Translation from 16 to 1444
> BO06014.pep
MESDTLDQESAAAALKKLSPSESPESSKKWEPTSGEWVAAGGGEEAPPTK
RQKTADEKEENREEDEDSEESVDEEEDDGEGIVQIGGTISPRHFQRIPVF
IVDYHNDVLEFIYRCFATRHLPLQNNTLVHFDSHPDLVIPRHIAASSTYQ
KETMLNELSIENWIMPTLYAGHFNRVVWLKNSWCQQLPTGRHDFKVGQKD
DRIGVDCPLDYFIADGNYCTTEDLQDAKSVELQVHDADNESLNPNEFLTE
KDAKGFVLDIDLDFFSTSNPFLEIYKDADCYNQLKEIFHFESVEKVKKSG
TATIADYLATAERRQTQLDALKTIFWHLEEERNFEGLEKPDETVVTPEVY
AKIVKLADQLQEKYPDDEIDWHLIFDSGSTTDNNGLPHHISIAEELETYF
ANFKRFLQRLPVPPVAITMAHSAQDDYCPQDQVAFIEECVLRLLKEVFGE
RLHDKAILHYMDDPWDVMKLASFLDH
BO06014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MESR6-PA | 470 | CG6818-PA | 1..470 | 1..470 | 2508 | 100 | Plus |
MESR6-PB | 484 | CG6818-PB | 1..484 | 1..470 | 2483 | 97.1 | Plus |