Clone BO06015 Report

Search the DGRC for BO06015

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG9393-RA
Protein status:BO06015.pep: validated full length
Sequenced Size:1015

Clone Sequence Records

BO06015.3prime Sequence

903 bp (829 high quality bases) assembled on 2005-12-02

> BO06015.3prime
ATGGTCTAGAAAGCTTGCGTCTAGGCCCTCCTCCATCTCGTCATCCTCGT
AATCTATGCCATCGTAGTCCGTCGAAGAGCGTGTCGTTAGCTGGTTGTAA
ATCCCACGCCATGCCGCAAACGCTCCCATGGCCAAGACGGCTCCCACGCC
GGCTACTATTTTGGTGTTCAGCTCGGAGTCTAGGAACTTGCGCTCCGAGG
CCGTCAGACTGGCCTCCGTGCCACTGGGTGTCTTTGTGAGCTTGACGGAA
CTGTATCCCTCGATGCGGAATATGTCCTTCGTGATGCGGTTGATAAAGTT
CACTAGGTTTTGGCAGCCCTTAATGTGATTCTGCAGTGGATTGTTAGGCA
GTGCGATCTTAAAGATGATGGCAAGATAGCTGTAGACAATGGCATCAAAC
TCGCTGTAGGTGTCGCCAAAGAACCACACCTTGCGACCCAATTTCCGGGA
GAGCAGGTTCACCACTTTTTTGGCATTGACAACGAGGTAGTCGCCTTCGT
GCTTGTCCAACTTGTCGTTCACATCGAAACCGGCCATCACCTGAACCACG
TCGCAGGCTTCCCTTTGGTAGGACGACGGGTAGTAGAAGTTGAAGGGGAA
TGGCGTGCGCTTGGCGTAGAGGCCCCGCGTGGTTGTGTCAAAATTGTGAG
GCTCTCCAAACAGGAAGTAGTGGTAGTAGGCATGCAGATTGGTGAACACC
CAGTTGGCGTAGGCGGTGGACAAATGCTTTTGTTTAGTGCTTAAATGCGC
ATCTATCGGGTAACCCTCGAGATCCAGCACGCGCTTAATTTGCCTATAGC
CCGCGAACTTCTGGTTGCCGATCTGCAGATACGGCAGCTTCCCGGCTCCC
CGACGCAGCGGATTGGAGCTGGTCTGCACGTCCATGGGGCAGCGGGTGAA
TCG

BO06015.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 984 CG9393-RA 97..981 903..19 4375 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 1479 CG9393-RA 248..1132 903..19 4395 99.8 Minus
CG9393-RB 1589 CG9393-RB 248..1060 903..91 4035 99.8 Minus
CG9393-RB 1589 CG9393-RB 1168..1242 93..19 375 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562175..9562570 91..486 1980 100 Plus
3R 32079331 3R 9562817..9563097 487..767 1405 100 Plus
3R 32079331 3R 9563189..9563327 765..903 665 98.6 Plus
3R 32079331 3R 9561930..9562004 19..93 375 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:50:24 has no hits.

BO06015.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:23 Download gff for BO06015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 97..984 15..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:18 Download gff for BO06015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 97..984 15..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:55 Download gff for BO06015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 248..1135 15..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:22:53 Download gff for BO06015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 248..1135 15..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:22:53 Download gff for BO06015.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9561927..9562001 15..90 97 <- Plus
3R 9562175..9562570 91..486 100 <- Plus
3R 9562817..9563095 487..765 100 <- Plus
3R 9563190..9563327 766..903 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:55 Download gff for BO06015.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387649..5387723 15..90 97 <- Plus
arm_3R 5387897..5388292 91..486 100 <- Plus
arm_3R 5388539..5388817 487..765 100 <- Plus
arm_3R 5388912..5389049 766..903 98   Plus

BO06015.5prime Sequence

845 bp (735 high quality bases) assembled on 2005-12-02

> BO06015.5prime
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGC

BO06015.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 984 CG9393-RA 1..829 17..845 4145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RB 1589 CG9393-RB 152..980 17..845 4145 100 Plus
CG9393-RA 1479 CG9393-RA 152..980 17..845 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562255..9562570 845..530 1580 100 Minus
3R 32079331 3R 9562817..9563097 529..249 1405 100 Minus
3R 32079331 3R 9563189..9563337 251..103 745 100 Minus
3R 32079331 3R 9563436..9563522 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:57:13 has no hits.

BO06015.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:24 Download gff for BO06015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:19 Download gff for BO06015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:55 Download gff for BO06015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..980 17..845 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:49 Download gff for BO06015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..980 17..845 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:49 Download gff for BO06015.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9562255..9562570 530..845 100 <- Minus
3R 9562817..9563095 251..529 100 <- Minus
3R 9563190..9563336 104..250 100 <- Minus
3R 9563436..9563522 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:55 Download gff for BO06015.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387977..5388292 530..845 100 <- Minus
arm_3R 5388539..5388817 251..529 100 <- Minus
arm_3R 5388912..5389058 104..250 100 <- Minus
arm_3R 5389158..5389244 17..103 100   Minus

BO06015.complete Sequence

1015 bp (1015 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630227

> BO06015.complete
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCTGAAC
ACCAAAATAGTAGCCGGCGTGGGAGCCGTCTTGGCCATGGGAGCGTTTGC
GGCATGGCGTGGGATTTACAACCAGCTAACGACACGCTCTTCGACGGACT
ACGATGGCATAGATTACGAGGATGACGAGATGGAGGAGGGCCTAGACGCA
AGCTTTCTAGACCAT

BO06015.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 984 CG9393-PA 1..981 17..997 4905 100 Plus
CG9393-RB 951 CG9393-PB 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 1479 CG9393-RA 152..1132 17..997 4905 100 Plus
CG9393-RB 1589 CG9393-RB 152..1060 17..925 4545 100 Plus
CG9393-RB 1589 CG9393-RB 1168..1242 923..997 375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9562175..9562570 925..530 1980 100 Minus
3R 32079331 3R 9562817..9563097 529..249 1405 100 Minus
3R 32079331 3R 9563189..9563337 251..103 745 100 Minus
3R 32079331 3R 9563436..9563522 103..17 435 100 Minus
3R 32079331 3R 9561930..9562004 997..923 375 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:39:37 has no hits.

BO06015.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:51 Download gff for BO06015.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 1..984 17..1001 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:28 Download gff for BO06015.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 149..1132 17..1001 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:50 Download gff for BO06015.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..1132 17..999 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:51 Download gff for BO06015.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 149..1132 17..1001 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:17 Download gff for BO06015.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 152..1132 17..999 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:17 Download gff for BO06015.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9561928..9562001 926..999 97 <- Minus
3R 9562175..9562570 530..925 100 <- Minus
3R 9562817..9563095 251..529 100 <- Minus
3R 9563190..9563336 104..250 100 <- Minus
3R 9563436..9563522 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:50 Download gff for BO06015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387650..5387723 926..999 97 <- Minus
arm_3R 5387897..5388292 530..925 100 <- Minus
arm_3R 5388539..5388817 251..529 100 <- Minus
arm_3R 5388912..5389058 104..250 100 <- Minus
arm_3R 5389158..5389244 17..103 100   Minus

BO06015.pep Sequence

Translation from 16 to 1015

> BO06015.pep
MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS
GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW
VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD
VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE
FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS
SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI
YNQLTTRSSTDYDGIDYEDDEMEEGLDASFLDH

BO06015.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 327 CG9393-PA 1..327 1..327 1731 100 Plus
CG9393-PB 316 CG9393-PB 1..303 1..303 1604 100 Plus