Clone Sequence Records
BO06015.3prime Sequence
903 bp (829 high quality bases) assembled on 2005-12-02
> BO06015.3prime
ATGGTCTAGAAAGCTTGCGTCTAGGCCCTCCTCCATCTCGTCATCCTCGT
AATCTATGCCATCGTAGTCCGTCGAAGAGCGTGTCGTTAGCTGGTTGTAA
ATCCCACGCCATGCCGCAAACGCTCCCATGGCCAAGACGGCTCCCACGCC
GGCTACTATTTTGGTGTTCAGCTCGGAGTCTAGGAACTTGCGCTCCGAGG
CCGTCAGACTGGCCTCCGTGCCACTGGGTGTCTTTGTGAGCTTGACGGAA
CTGTATCCCTCGATGCGGAATATGTCCTTCGTGATGCGGTTGATAAAGTT
CACTAGGTTTTGGCAGCCCTTAATGTGATTCTGCAGTGGATTGTTAGGCA
GTGCGATCTTAAAGATGATGGCAAGATAGCTGTAGACAATGGCATCAAAC
TCGCTGTAGGTGTCGCCAAAGAACCACACCTTGCGACCCAATTTCCGGGA
GAGCAGGTTCACCACTTTTTTGGCATTGACAACGAGGTAGTCGCCTTCGT
GCTTGTCCAACTTGTCGTTCACATCGAAACCGGCCATCACCTGAACCACG
TCGCAGGCTTCCCTTTGGTAGGACGACGGGTAGTAGAAGTTGAAGGGGAA
TGGCGTGCGCTTGGCGTAGAGGCCCCGCGTGGTTGTGTCAAAATTGTGAG
GCTCTCCAAACAGGAAGTAGTGGTAGTAGGCATGCAGATTGGTGAACACC
CAGTTGGCGTAGGCGGTGGACAAATGCTTTTGTTTAGTGCTTAAATGCGC
ATCTATCGGGTAACCCTCGAGATCCAGCACGCGCTTAATTTGCCTATAGC
CCGCGAACTTCTGGTTGCCGATCTGCAGATACGGCAGCTTCCCGGCTCCC
CGACGCAGCGGATTGGAGCTGGTCTGCACGTCCATGGGGCAGCGGGTGAA
TCG
BO06015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 984 | CG9393-RA | 97..981 | 903..19 | 4375 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RA | 1479 | CG9393-RA | 248..1132 | 903..19 | 4395 | 99.8 | Minus |
CG9393-RB | 1589 | CG9393-RB | 248..1060 | 903..91 | 4035 | 99.8 | Minus |
CG9393-RB | 1589 | CG9393-RB | 1168..1242 | 93..19 | 375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562175..9562570 | 91..486 | 1980 | 100 | Plus |
3R | 32079331 | 3R | 9562817..9563097 | 487..767 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 9563189..9563327 | 765..903 | 665 | 98.6 | Plus |
3R | 32079331 | 3R | 9561930..9562004 | 19..93 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:50:24 has no hits.
BO06015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:23 Download gff for
BO06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 97..984 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:18 Download gff for
BO06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 97..984 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:30:55 Download gff for
BO06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 248..1135 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:22:53 Download gff for
BO06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 248..1135 | 15..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:22:53 Download gff for
BO06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9561927..9562001 | 15..90 | 97 | <- | Plus |
3R | 9562175..9562570 | 91..486 | 100 | <- | Plus |
3R | 9562817..9563095 | 487..765 | 100 | <- | Plus |
3R | 9563190..9563327 | 766..903 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:30:55 Download gff for
BO06015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5387649..5387723 | 15..90 | 97 | <- | Plus |
arm_3R | 5387897..5388292 | 91..486 | 100 | <- | Plus |
arm_3R | 5388539..5388817 | 487..765 | 100 | <- | Plus |
arm_3R | 5388912..5389049 | 766..903 | 98 | | Plus |
BO06015.5prime Sequence
845 bp (735 high quality bases) assembled on 2005-12-02
> BO06015.5prime
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGC
BO06015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 984 | CG9393-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RB | 1589 | CG9393-RB | 152..980 | 17..845 | 4145 | 100 | Plus |
CG9393-RA | 1479 | CG9393-RA | 152..980 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562255..9562570 | 845..530 | 1580 | 100 | Minus |
3R | 32079331 | 3R | 9562817..9563097 | 529..249 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 9563189..9563337 | 251..103 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9563436..9563522 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:13 has no hits.
BO06015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:24 Download gff for
BO06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:19 Download gff for
BO06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:55 Download gff for
BO06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..980 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:28:49 Download gff for
BO06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..980 | 17..845 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:28:49 Download gff for
BO06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9562255..9562570 | 530..845 | 100 | <- | Minus |
3R | 9562817..9563095 | 251..529 | 100 | <- | Minus |
3R | 9563190..9563336 | 104..250 | 100 | <- | Minus |
3R | 9563436..9563522 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:55 Download gff for
BO06015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5387977..5388292 | 530..845 | 100 | <- | Minus |
arm_3R | 5388539..5388817 | 251..529 | 100 | <- | Minus |
arm_3R | 5388912..5389058 | 104..250 | 100 | <- | Minus |
arm_3R | 5389158..5389244 | 17..103 | 100 | | Minus |
BO06015.complete Sequence
1015 bp (1015 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630227
> BO06015.complete
GAAGTTATCAGTCGACATGGAGATGCAACTGGGAGCCATGCTGTATGTGT
ACAAGGGGGAGTACGGACTGCCGTCCATAGATTTTGAATGTTTACGTGCT
CTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGACGTGCAGACCAGCTC
CAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGTATCTGCAGATCGGCA
ACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGCGTGCTGGATCTCGAG
GGTTACCCGATAGATGCGCATTTAAGCACTAAACAAAAGCATTTGTCCAC
CGCCTACGCCAACTGGGTGTTCACCAATCTGCATGCCTACTACCACTACT
TCCTGTTTGGAGAGCCTCACAATTTTGACACAACCACGCGGGGCCTCTAC
GCCAAGCGCACGCCATTCCCCTTCAACTTCTACTACCCGTCGTCCTACCA
AAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCGGTTTCGATGTGAACG
ACAAGTTGGACAAGCACGAAGGCGACTACCTCGTTGTCAATGCCAAAAAA
GTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAAGGTGTGGTTCTTTGG
CGACACCTACAGCGAGTTTGATGCCATTGTCTACAGCTATCTTGCCATCA
TCTTTAAGATCGCACTGCCTAACAATCCACTGCAGAATCACATTAAGGGC
TGCCAAAACCTAGTGAACTTTATCAACCGCATCACGAAGGACATATTCCG
CATCGAGGGATACAGTTCCGTCAAGCTCACAAAGACACCCAGTGGCACGG
AGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTAGACTCCGAGCTGAAC
ACCAAAATAGTAGCCGGCGTGGGAGCCGTCTTGGCCATGGGAGCGTTTGC
GGCATGGCGTGGGATTTACAACCAGCTAACGACACGCTCTTCGACGGACT
ACGATGGCATAGATTACGAGGATGACGAGATGGAGGAGGGCCTAGACGCA
AGCTTTCTAGACCAT
BO06015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RA | 984 | CG9393-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
CG9393-RB | 951 | CG9393-PB | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-RA | 1479 | CG9393-RA | 152..1132 | 17..997 | 4905 | 100 | Plus |
CG9393-RB | 1589 | CG9393-RB | 152..1060 | 17..925 | 4545 | 100 | Plus |
CG9393-RB | 1589 | CG9393-RB | 1168..1242 | 923..997 | 375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9562175..9562570 | 925..530 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 9562817..9563097 | 529..249 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 9563189..9563337 | 251..103 | 745 | 100 | Minus |
3R | 32079331 | 3R | 9563436..9563522 | 103..17 | 435 | 100 | Minus |
3R | 32079331 | 3R | 9561930..9562004 | 997..923 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:39:37 has no hits.
BO06015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:51 Download gff for
BO06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 1..984 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:28 Download gff for
BO06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 149..1132 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:50 Download gff for
BO06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..1132 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:51 Download gff for
BO06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 149..1132 | 17..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:17 Download gff for
BO06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9393-RA | 152..1132 | 17..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:17 Download gff for
BO06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9561928..9562001 | 926..999 | 97 | <- | Minus |
3R | 9562175..9562570 | 530..925 | 100 | <- | Minus |
3R | 9562817..9563095 | 251..529 | 100 | <- | Minus |
3R | 9563190..9563336 | 104..250 | 100 | <- | Minus |
3R | 9563436..9563522 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:50 Download gff for
BO06015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5387650..5387723 | 926..999 | 97 | <- | Minus |
arm_3R | 5387897..5388292 | 530..925 | 100 | <- | Minus |
arm_3R | 5388539..5388817 | 251..529 | 100 | <- | Minus |
arm_3R | 5388912..5389058 | 104..250 | 100 | <- | Minus |
arm_3R | 5389158..5389244 | 17..103 | 100 | | Minus |
BO06015.pep Sequence
Translation from 16 to 1015
> BO06015.pep
MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS
GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW
VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD
VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE
FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS
SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI
YNQLTTRSSTDYDGIDYEDDEMEEGLDASFLDH
BO06015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9393-PA | 327 | CG9393-PA | 1..327 | 1..327 | 1731 | 100 | Plus |
CG9393-PB | 316 | CG9393-PB | 1..303 | 1..303 | 1604 | 100 | Plus |