Clone Sequence Records
BO06016.3prime Sequence
926 bp (721 high quality bases) assembled on 2005-12-02
> BO06016.3prime
ATGGTCTAGAAAGCTTGCAAACTCTAAACGAGCGAGCAATCCCTGGCAGC
GATCTTCTAATTGGAGGGGACTACACTGGATAGTCGGATCCTCTGTTAGA
GTCCGGGTGATCTTCCATAAGCACTCGAGATCGTATTGCACATGATAATC
GTTCATTGTGTAACTATCGAATAGTAAAAATTTGGTGGCTACGGTTCCCT
CTGCCAATCGGCGAGCGGCTATAAACTCCAGTAGTTCTATAAAATCGAGG
TAGTTGATACCAAAGCTGGCCCTCAGCATTGTCTGGCAGTGGGCCTCAAA
GTTGTCCATCTGCTGGCAGTCGGAGATCTCATTGCAAACGGCCTTCAGGT
TGTTCTTAAGGTTTTGCCAGACCATGGATATGTTGCAGCCATTGAACCAG
TTGTGATTGACGGATATGGTGTCTGTTAGGTTCCACACCTGATGAAACCA
GCCACTGGGCACGAAAACAGCTTCATTGGCCCGCTGATTAATGGTGTAAT
ATCGCACGTTGTGCTCATCCAGCATTTTCTCGTCTATACTAAAGGGCAGG
TTTCCCAAGCGATCGTTGAGTTTGAGTTCTTCTCCCGGCGGCATTATCAG
CCATTTCTTAAGGCCCACTATATTGGTGGACCAACTGAAGGAGCCAAACA
CGTCCGCATGATAGGAGGTCCATGAGTTCTTGGGCCCCATATAGACGAAT
CGATAGTCGTCTTTCCCCTGCTGAATCAGTTGTTCGTTGAGCCAGTCGGA
GGCAAAGTATTTAGGCACCTTGTAGAAGTTATAGCCCGGCATTTGGGCAG
CCAGATGCCAGTCCTTGAGGTAGAGATTGTCCCCGCTCGCGGGAGCCACA
TTACTATTCACTTCCGCCGACGTCCACGCTGCTGACGATTGACTTTCGAT
GCTACTCCTCCACTGGCCAGGTAGTC
BO06016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-PA | 1278 | CG7200-RA | 380..1275 | 914..19 | 4480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 2041 | CG7200-RB | 1031..1939 | 926..19 | 4520 | 99.9 | Minus |
| CG7200-RA | 1517 | CG7200-RA | 507..1415 | 926..19 | 4520 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18157212..18157864 | 19..671 | 3265 | 100 | Plus |
| 2L | 23513712 | 2L | 18157917..18158174 | 670..926 | 1240 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:03:38 has no hits.
BO06016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:25 Download gff for
BO06016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 367..1278 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:21 Download gff for
BO06016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 367..1278 | 18..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:32 Download gff for
BO06016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 507..1415 | 19..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:20 Download gff for
BO06016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 507..1415 | 19..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:20 Download gff for
BO06016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18157918..18158174 | 671..926 | 99 | | Plus |
| 2L | 18157212..18157863 | 19..670 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:32 Download gff for
BO06016.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18157212..18157863 | 19..670 | 100 | <- | Plus |
| arm_2L | 18157918..18158174 | 671..926 | 99 | | Plus |
BO06016.5prime Sequence
983 bp (750 high quality bases) assembled on 2005-12-02
> BO06016.5prime
GAAGTTATCAGTCGACATGGCGTCCGAAGAGCGGGATGGGGATGTCCTGC
TCCAGTTGCATCCCGAGGAAGTCGTGGAAACTGACCCACAGCTGCCCGAG
GAAATCGAGCGCTGTTCTGGACTAGATTATAACGATTTTTTCTGGCGCTA
CATGCACAAGAACATACCGGTCATCATAGCCAATGTGTCTAACGACTGGG
AGTGCCAGAACTGGACTGTAGGCCAGTCCAGTCCAGAGTCGCGGGATCTC
AACTCCAATCCGAGTGCATCTTCCATCAACTTTGACTACCTCAAAACCAA
GATCAGCGATGGCCCGGTTCCAGTTGCCAATTGCAATTCGTCGTACTTCA
ATAGTCACACCAAACTGGAGCTCAACTTCCACGACTACCTGGCCAAGTGG
AGGAGTAGCATCGAAAGTCAATCGTCAGCAGCGTGGACGTCGGCGGAAGT
GAATAGTAATGTGGCTCCCGCGAGCGGGGACAATCTCTACCTCAAGGACT
GGCATCTGGCTGCCCAAATGCCGGGCTATAACTTCTACAAGGTGCCTAAA
TACTTTGCCTCCGACTGGCTCAACGAACAACTGATTCAGCAGGGGAAAGA
CGACTATCGATTCGTCTATATGGGGCCCAAGAACTCATGGACCTCCTATC
ATGCGGACGTGTTTGGCTCCTTCAGTTGGTCCACCAATATAGTGGGCCTT
AAGAAATGGCTGATAATGCCGCCGGGAGAAGAACTCAAACTCAACGATCG
CTTGGGAAACCTGCCCTTTAGTATAGACGAGAAAATGCTGGATGAGCACA
ACGTGCGATATTACACCATTAATCAGCGGGCCAATGAAGCTGTTTTCGTG
GCCAGTGGCTGGGTTCATCANGTGTGGAACTAACAGACACCATATCCCGT
CATCACAACTGGTTCAATGGGCTGCACATATCCATGGTCTGGCAAACCTT
AAAGACAACCTGAAGGCCGTTTGGAATGAGATC
BO06016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-PA | 1278 | CG7200-RA | 1..864 | 17..880 | 4251 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 2041 | CG7200-RB | 665..1633 | 17..983 | 4619 | 98.8 | Plus |
| CG7200-RA | 1517 | CG7200-RA | 141..1109 | 17..983 | 4619 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18157917..18158540 | 640..17 | 3120 | 100 | Minus |
| 2L | 23513712 | 2L | 18157518..18157864 | 983..639 | 1414 | 95.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:50:38 has no hits.
BO06016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:26 Download gff for
BO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 1..969 | 17..983 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:22 Download gff for
BO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-PA | 1..969 | 17..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:25 Download gff for
BO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 133..1109 | 9..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:56:35 Download gff for
BO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 133..1109 | 9..983 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:56:35 Download gff for
BO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18157518..18157863 | 640..983 | 96 | <- | Minus |
| 2L | 18157918..18158548 | 9..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:25 Download gff for
BO06016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18157518..18157863 | 640..983 | 96 | <- | Minus |
| arm_2L | 18157918..18158548 | 9..639 | 99 | | Minus |
BO06016.complete Sequence
1309 bp (1309 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630228
> BO06016.complete
GAAGTTATCAGTCGACATGGCGTCCGAAGAGCGGGATGGGGATGTCCTGC
TCCAGTTGCATCCCGAGGAAGTCGTGGAAACTGACCCACAGCTGCCCGAG
GAAATCGAGCGCTGTTCTGGACTAGATTATAACGATTTTTTCTGGCGCTA
CATGCACAAGAACATACCGGTCATCATAGCCAATGTGTCTAACGACTGGG
AGTGCCAGAACTGGACTGTAGGCCAGTCCAGTCCAGAGTCGCGGGATCTC
AACTCCAATCCGAGTGCATCTTCCATCAACTTTGACTACCTCAAAACCAA
GATCAGCGATGGCCCGGTTCCAGTTGCCAATTGCAATTCGTCGTACTTCA
ATAGTCACACCAAACTGGAGCTCAACTTCCACGACTACCTGGCCAAGTGG
AGGAGTAGCATCGAAAGTCAATCGTCAGCAGCGTGGACGTCGGCGGAAGT
GAATAGTAATGTGGCTCCCGCGAGCGGGGACAATCTCTACCTCAAGGACT
GGCATCTGGCTGCCCAAATGCCGGGCTATAACTTCTACAAGGTGCCTAAA
TACTTTGCCTCCGACTGGCTCAACGAACAACTGATTCAGCAGGGGAAAGA
CGACTATCGATTCGTCTATATGGGGCCCAAGAACTCATGGACCTCCTATC
ATGCGGACGTGTTTGGCTCCTTCAGTTGGTCCACCAATATAGTGGGCCTT
AAGAAATGGCTGATAATGCCGCCGGGAGAAGAACTCAAACTCAACGATCG
CTTGGGAAACCTGCCCTTTAGTATAGACGAGAAAATGCTGGATGAGCACA
ACGTGCGATATTACACCATTAATCAGCGGGCCAATGAAGCTGTTTTCGTG
CCCAGTGGCTGGTTTCATCAGGTGTGGAACCTAACAGACACCATATCCGT
CAATCACAACTGGTTCAATGGCTGCAACATATCCATGGTCTGGCAAAACC
TTAAGAACAACCTGAAGGCCGTTTGCAATGAGATCTCCGACTGCCAGCAG
ATGGACAACTTTGAGGCCCACTGCCAGACAATGCTGAGGGCCAGCTTTGG
TATCAACTACCTCGATTTTATAGAACTACTGGAGTTTATAGCCGCTCGCC
GATTGGCAGAGGGAACCGTAGCCACCAAATTTTTACTATTCGATAGTTAC
ACAATGAACGATTATCATGTGCAATACGATCTCGAGTGCTTATGGAAGAT
CACCCGGACTCTAACAGAGGATCCGACTATCCAGTGTAGTCCCCTCCAAT
TAGAAGATCGCTGCCAGGGATTGCTCGCTCGTTTAGAGTTTGCAAGCTTT
CTAGACCAT
BO06016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 1278 | CG7200-PB | 1..1275 | 17..1291 | 6375 | 100 | Plus |
| CG7200-RA | 1278 | CG7200-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-RB | 2041 | CG7200-RB | 665..1939 | 17..1291 | 6375 | 100 | Plus |
| CG7200-RA | 1517 | CG7200-RA | 141..1415 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:27:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18157212..18157864 | 1291..639 | 3265 | 100 | Minus |
| 2L | 23513712 | 2L | 18157917..18158540 | 640..17 | 3120 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:27:41 has no hits.
BO06016.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:53 Download gff for
BO06016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 1..1278 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:29 Download gff for
BO06016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 129..1411 | 9..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:54 Download gff for
BO06016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 141..1415 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:53 Download gff for
BO06016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 129..1411 | 9..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:52 Download gff for
BO06016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7200-RA | 141..1415 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:52 Download gff for
BO06016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18157210..18157863 | 640..1293 | 99 | <- | Minus |
| 2L | 18157918..18158540 | 17..639 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:54 Download gff for
BO06016.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18157210..18157863 | 640..1293 | 99 | <- | Minus |
| arm_2L | 18157918..18158540 | 17..639 | 100 | | Minus |
BO06016.pep Sequence
Translation from 16 to 1309
> BO06016.pep
MASEERDGDVLLQLHPEEVVETDPQLPEEIERCSGLDYNDFFWRYMHKNI
PVIIANVSNDWECQNWTVGQSSPESRDLNSNPSASSINFDYLKTKISDGP
VPVANCNSSYFNSHTKLELNFHDYLAKWRSSIESQSSAAWTSAEVNSNVA
PASGDNLYLKDWHLAAQMPGYNFYKVPKYFASDWLNEQLIQQGKDDYRFV
YMGPKNSWTSYHADVFGSFSWSTNIVGLKKWLIMPPGEELKLNDRLGNLP
FSIDEKMLDEHNVRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWF
NGCNISMVWQNLKNNLKAVCNEISDCQQMDNFEAHCQTMLRASFGINYLD
FIELLEFIAARRLAEGTVATKFLLFDSYTMNDYHVQYDLECLWKITRTLT
EDPTIQCSPLQLEDRCQGLLARLEFASFLDH
BO06016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7200-PB | 425 | CG7200-PB | 1..425 | 1..425 | 2319 | 100 | Plus |
| CG7200-PA | 425 | CG7200-PA | 1..425 | 1..425 | 2319 | 100 | Plus |
| PSR-PA | 408 | CG5383-PA | 155..303 | 174..309 | 204 | 34.4 | Plus |
| PSR-PB | 441 | CG5383-PB | 155..303 | 174..309 | 204 | 34.4 | Plus |
