Clone Sequence Records
BO06018.3prime Sequence
768 bp (718 high quality bases) assembled on 2005-12-02
> BO06018.3prime
ATGGTCTAGAAAGCTTGCCACATCGTACAATTTCATGTTCTCGATCTCGT
CCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAGG
CACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGGC
GAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAAA
TGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTTG
CGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTGA
TATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGCG
AATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGATC
ATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCGA
TACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGAA
ACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCACT
TCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTAG
ATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGCA
TAACACAGCGCANACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAGG
ACGCTGGTCAGCTGCTCCTCAAAGTTATCGAAACGGAGGGGTGTGAGAAA
GCCGAGGGAGCCCAAATG
BO06018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PC | 1128 | CG33156-RC | 376..1125 | 768..19 | 3706 | 99.7 | Minus |
CG33156-PA | 1365 | CG33156-RA | 613..1362 | 768..19 | 3706 | 99.7 | Minus |
CG33156-PE | 1473 | CG33156-RE | 721..1470 | 768..19 | 3706 | 99.7 | Minus |
CG33156-PB | 1362 | CG33156-RB | 610..1359 | 768..19 | 3706 | 99.7 | Minus |
CG6145-PA | 1563 | CG6145-RA | 1099..1281 | 480..298 | 465 | 90.1 | Minus |
CG6145-PC | 1647 | CG6145-RC | 1183..1365 | 480..298 | 465 | 90.1 | Minus |
CG6145-PB | 1263 | CG6145-RB | 799..981 | 480..298 | 465 | 90.1 | Minus |
CG6145-PA | 1563 | CG6145-RA | 1431..1496 | 148..83 | 155 | 89.3 | Minus |
CG6145-PC | 1647 | CG6145-RC | 1515..1580 | 148..83 | 155 | 89.3 | Minus |
CG6145-PB | 1263 | CG6145-RB | 1131..1196 | 148..83 | 155 | 89.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RF | 1795 | CG33156-RF | 680..1429 | 768..19 | 3724 | 99.7 | Minus |
CG33156-RB | 1824 | CG33156-RB | 709..1458 | 768..19 | 3724 | 99.7 | Minus |
CG33156-RE | 2330 | CG33156-RE | 1215..1964 | 768..19 | 3724 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549418 | 304..768 | 2299 | 99.6 | Plus |
2R | 25286936 | 2R | 13548610..13548896 | 19..305 | 1435 | 100 | Plus |
2R | 25286936 | 2R | 13538198..13538468 | 304..574 | 770 | 85.6 | Plus |
2R | 25286936 | 2R | 13537799..13538051 | 53..305 | 545 | 81 | Plus |
2R | 25286936 | 2R | 13538625..13538733 | 656..764 | 249 | 81.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:02:27 has no hits.
BO06018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:29 Download gff for
BO06018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PE | 721..1473 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:26 Download gff for
BO06018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PE | 721..1473 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:01 Download gff for
BO06018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1215..1964 | 19..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:50 Download gff for
BO06018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RE | 1215..1964 | 19..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:50 Download gff for
BO06018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13548610..13548894 | 19..303 | 100 | <- | Plus |
2R | 13548954..13549418 | 304..768 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:01 Download gff for
BO06018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436115..9436399 | 19..303 | 100 | <- | Plus |
arm_2R | 9436459..9436923 | 304..768 | 99 | | Plus |
BO06018.5prime Sequence
816 bp (695 high quality bases) assembled on 2005-12-02
> BO06018.5prime
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAG
GGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCG
CAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATG
GTGAGGCGCGACCTGC
BO06018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PB | 1362 | CG33156-RB | 1..800 | 17..816 | 4000 | 100 | Plus |
CG33156-PA | 1365 | CG33156-RA | 176..803 | 189..816 | 3140 | 100 | Plus |
CG33156-PE | 1473 | CG33156-RE | 285..911 | 190..816 | 3135 | 100 | Plus |
CG33156-PC | 1128 | CG33156-RC | 1..566 | 251..816 | 2830 | 100 | Plus |
CG6145-PA | 1563 | CG6145-RA | 272..392 | 222..342 | 330 | 90.9 | Plus |
CG6145-PC | 1647 | CG6145-RC | 356..476 | 222..342 | 330 | 90.9 | Plus |
CG6145-PB | 1263 | CG6145-RB | 1..92 | 251..342 | 260 | 91.3 | Plus |
CG6145-PA | 1563 | CG6145-RA | 601..689 | 491..579 | 195 | 88.7 | Plus |
CG6145-PC | 1647 | CG6145-RC | 685..773 | 491..579 | 195 | 88.7 | Plus |
CG6145-PB | 1263 | CG6145-RB | 301..389 | 491..579 | 195 | 88.7 | Plus |
CG6145-PA | 1563 | CG6145-RA | 430..485 | 383..438 | 155 | 91 | Plus |
CG6145-PC | 1647 | CG6145-RC | 514..569 | 383..438 | 155 | 91 | Plus |
CG6145-PB | 1263 | CG6145-RB | 130..185 | 383..438 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RB | 1824 | CG33156-RB | 100..899 | 17..816 | 4000 | 100 | Plus |
CG33156-RF | 1795 | CG33156-RF | 242..870 | 188..816 | 3145 | 100 | Plus |
CG33156-RA | 1874 | CG33156-RA | 322..949 | 189..816 | 3140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13549599..13549918 | 507..188 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 13549228..13549536 | 816..508 | 1545 | 100 | Minus |
2R | 25286936 | 2R | 13549986..13550159 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 13539104..13539359 | 438..180 | 600 | 83 | Minus |
2R | 25286936 | 2R | 13538625..13538855 | 738..508 | 585 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:19 has no hits.
BO06018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:30 Download gff for
BO06018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PB | 1..800 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:27 Download gff for
BO06018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-PB | 1..800 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:58 Download gff for
BO06018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 100..899 | 17..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:06 Download gff for
BO06018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 100..899 | 17..816 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:06 Download gff for
BO06018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13549228..13549536 | 508..816 | 100 | <- | Minus |
2R | 13549599..13549916 | 190..507 | 100 | <- | Minus |
2R | 13549987..13550159 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:58 Download gff for
BO06018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436733..9437041 | 508..816 | 100 | <- | Minus |
arm_2R | 9437104..9437421 | 190..507 | 100 | <- | Minus |
arm_2R | 9437492..9437664 | 17..189 | 100 | | Minus |
BO06018.complete Sequence
1393 bp (1393 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630229
> BO06018.complete
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAG
GGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCG
CAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATG
GTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTC
ATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGGA
CGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGACGC
CCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATCCAT
CCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCTTAG
CTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAGTAT
CCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAACAGG
CAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTATCC
CGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCTCCC
TAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTGGAC
GAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGAGAT
CGAGAACATGAAATTGTACGATGTGGCAAGCTTTCTAGACCAT
BO06018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RB | 1362 | CG33156-PB | 1..1359 | 17..1375 | 6795 | 100 | Plus |
CG33156-RF | 1353 | CG33156-PF | 163..1350 | 188..1375 | 5940 | 100 | Plus |
CG33156-RA | 1365 | CG33156-PA | 176..1362 | 189..1375 | 5935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-RB | 1824 | CG33156-RB | 100..1458 | 17..1375 | 6795 | 100 | Plus |
CG33156-RF | 1795 | CG33156-RF | 242..1429 | 188..1375 | 5940 | 100 | Plus |
CG33156-RA | 1874 | CG33156-RA | 322..1508 | 189..1375 | 5935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13548954..13549536 | 1090..508 | 2915 | 100 | Minus |
2R | 25286936 | 2R | 13549599..13549918 | 507..188 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 13548610..13548896 | 1375..1089 | 1435 | 100 | Minus |
2R | 25286936 | 2R | 13549986..13550159 | 190..17 | 870 | 100 | Minus |
2R | 25286936 | 2R | 13538198..13538468 | 1090..820 | 770 | 85.6 | Minus |
2R | 25286936 | 2R | 13539104..13539359 | 438..180 | 600 | 83 | Minus |
2R | 25286936 | 2R | 13538625..13538855 | 738..508 | 585 | 83.5 | Minus |
2R | 25286936 | 2R | 13537799..13538051 | 1341..1089 | 545 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:42 has no hits.
BO06018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:54 Download gff for
BO06018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 1..1362 | 17..1376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:31 Download gff for
BO06018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 117..1475 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:16 Download gff for
BO06018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 106..1458 | 23..1377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:54 Download gff for
BO06018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 117..1475 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:15 Download gff for
BO06018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33156-RB | 106..1458 | 23..1377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:15 Download gff for
BO06018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13549599..13549916 | 190..507 | 100 | <- | Minus |
2R | 13549987..13550153 | 23..189 | 100 | | Minus |
2R | 13548608..13548894 | 1091..1377 | 99 | <- | Minus |
2R | 13548954..13549536 | 508..1090 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:16 Download gff for
BO06018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9436113..9436399 | 1091..1377 | 99 | <- | Minus |
arm_2R | 9436459..9437041 | 508..1090 | 100 | <- | Minus |
arm_2R | 9437104..9437421 | 190..507 | 100 | <- | Minus |
arm_2R | 9437492..9437658 | 23..189 | 100 | | Minus |
BO06018.pep Sequence
Translation from 16 to 1393
> BO06018.pep
MFPLRPDQPQAVASFPLHSSLSIEEFNNVKWEDINDCNNNCIREEPILRP
KTNRHILRRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNEN
VRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPPV
MAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDRK
HEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYIT
SVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPIV
VPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCIC
AQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMKL
YDVASFLDH
BO06018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33156-PB | 453 | CG33156-PB | 1..453 | 1..453 | 2358 | 100 | Plus |
CG33156-PF | 450 | CG33156-PF | 11..450 | 10..453 | 2052 | 90.5 | Plus |
CG33156-PA | 454 | CG33156-PA | 60..454 | 59..453 | 2041 | 100 | Plus |
CG33156-PE | 490 | CG33156-PE | 96..490 | 59..453 | 2041 | 100 | Plus |
CG33156-PC | 375 | CG33156-PC | 1..375 | 79..453 | 1933 | 100 | Plus |