Clone BO06018 Report

Search the DGRC for BO06018

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG33156-RB
Protein status:BO06018.pep: validated full length
Sequenced Size:1393

Clone Sequence Records

BO06018.3prime Sequence

768 bp (718 high quality bases) assembled on 2005-12-02

> BO06018.3prime
ATGGTCTAGAAAGCTTGCCACATCGTACAATTTCATGTTCTCGATCTCGT
CCAGCGTATCCTCCGATCCGGATGCCGTCAGATCCGACAGCTCGTCCAGG
CACTTCTGTCGCTTGCGCACATTCCAGTGCAGTCCGTCGGCTAGGGAGGC
GAACCAGTCGGATATCTGATCCTGGGCGCAGATGCATGGCACGGGATAAA
TGGAGGTGGTCACGCGAAGGCTGTCGCCATGGAAGAGCTCCTGCCTGTTG
CGTCCATCGAAGCTAACCCACGATGTGTTGCGGCTCTCGGGGGATACTGA
TATCTTCAGCTCCACTCCTGCTGGCACCACAATGGGTCGGAAGCTAAGCG
AATGCGGGCAGATGGGAGTCACCATAATCGCCGGCACGGAGGGATGGATC
ATGGACGCACCGGCCGCCGCCGCATATGCCGTGCTTCCCGTGGGCGTCGA
TACGATCAGACCGTCGCCCTGCACCGACGTGATATACTTTCCGTCCAGAA
ACAGATCAATATTGCTCAGATACGGCGATGGACCACGATCAATGACCACT
TCGTTGAGCACCAGTATGCTGTTGGCTGCAGGTCGCGCCTCACCATCTAG
ATCTGCCTCCAGAGTCTTAGCCTCGTGTTTCCTATCGCTCCTGCGATGCA
TAACACAGCGCANACGACTGCGAAGCGTTAGGGCAGCGTGACCCTCCAGG
ACGCTGGTCAGCTGCTCCTCAAAGTTATCGAAACGGAGGGGTGTGAGAAA
GCCGAGGGAGCCCAAATG

BO06018.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PC 1128 CG33156-RC 376..1125 768..19 3706 99.7 Minus
CG33156-PA 1365 CG33156-RA 613..1362 768..19 3706 99.7 Minus
CG33156-PE 1473 CG33156-RE 721..1470 768..19 3706 99.7 Minus
CG33156-PB 1362 CG33156-RB 610..1359 768..19 3706 99.7 Minus
CG6145-PA 1563 CG6145-RA 1099..1281 480..298 465 90.1 Minus
CG6145-PC 1647 CG6145-RC 1183..1365 480..298 465 90.1 Minus
CG6145-PB 1263 CG6145-RB 799..981 480..298 465 90.1 Minus
CG6145-PA 1563 CG6145-RA 1431..1496 148..83 155 89.3 Minus
CG6145-PC 1647 CG6145-RC 1515..1580 148..83 155 89.3 Minus
CG6145-PB 1263 CG6145-RB 1131..1196 148..83 155 89.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RF 1795 CG33156-RF 680..1429 768..19 3724 99.7 Minus
CG33156-RB 1824 CG33156-RB 709..1458 768..19 3724 99.7 Minus
CG33156-RE 2330 CG33156-RE 1215..1964 768..19 3724 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13548954..13549418 304..768 2299 99.6 Plus
2R 25286936 2R 13548610..13548896 19..305 1435 100 Plus
2R 25286936 2R 13538198..13538468 304..574 770 85.6 Plus
2R 25286936 2R 13537799..13538051 53..305 545 81 Plus
2R 25286936 2R 13538625..13538733 656..764 249 81.7 Plus
Blast to na_te.dros performed on 2015-02-09 19:02:27 has no hits.

BO06018.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:29 Download gff for BO06018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PE 721..1473 18..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:26 Download gff for BO06018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PE 721..1473 18..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:01 Download gff for BO06018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RE 1215..1964 19..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:50 Download gff for BO06018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RE 1215..1964 19..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:50 Download gff for BO06018.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13548610..13548894 19..303 100 <- Plus
2R 13548954..13549418 304..768 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:01 Download gff for BO06018.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9436115..9436399 19..303 100 <- Plus
arm_2R 9436459..9436923 304..768 99   Plus

BO06018.5prime Sequence

816 bp (695 high quality bases) assembled on 2005-12-02

> BO06018.5prime
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAG
GGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCG
CAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATG
GTGAGGCGCGACCTGC

BO06018.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PB 1362 CG33156-RB 1..800 17..816 4000 100 Plus
CG33156-PA 1365 CG33156-RA 176..803 189..816 3140 100 Plus
CG33156-PE 1473 CG33156-RE 285..911 190..816 3135 100 Plus
CG33156-PC 1128 CG33156-RC 1..566 251..816 2830 100 Plus
CG6145-PA 1563 CG6145-RA 272..392 222..342 330 90.9 Plus
CG6145-PC 1647 CG6145-RC 356..476 222..342 330 90.9 Plus
CG6145-PB 1263 CG6145-RB 1..92 251..342 260 91.3 Plus
CG6145-PA 1563 CG6145-RA 601..689 491..579 195 88.7 Plus
CG6145-PC 1647 CG6145-RC 685..773 491..579 195 88.7 Plus
CG6145-PB 1263 CG6145-RB 301..389 491..579 195 88.7 Plus
CG6145-PA 1563 CG6145-RA 430..485 383..438 155 91 Plus
CG6145-PC 1647 CG6145-RC 514..569 383..438 155 91 Plus
CG6145-PB 1263 CG6145-RB 130..185 383..438 155 91 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RB 1824 CG33156-RB 100..899 17..816 4000 100 Plus
CG33156-RF 1795 CG33156-RF 242..870 188..816 3145 100 Plus
CG33156-RA 1874 CG33156-RA 322..949 189..816 3140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13549599..13549918 507..188 1600 100 Minus
2R 25286936 2R 13549228..13549536 816..508 1545 100 Minus
2R 25286936 2R 13549986..13550159 190..17 870 100 Minus
2R 25286936 2R 13539104..13539359 438..180 600 83 Minus
2R 25286936 2R 13538625..13538855 738..508 585 83.5 Minus
Blast to na_te.dros performed on 2015-02-11 04:57:19 has no hits.

BO06018.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:30 Download gff for BO06018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PB 1..800 17..816 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:27 Download gff for BO06018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-PB 1..800 17..816 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:16:58 Download gff for BO06018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 100..899 17..816 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:06 Download gff for BO06018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 100..899 17..816 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:06 Download gff for BO06018.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13549228..13549536 508..816 100 <- Minus
2R 13549599..13549916 190..507 100 <- Minus
2R 13549987..13550159 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:16:58 Download gff for BO06018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9436733..9437041 508..816 100 <- Minus
arm_2R 9437104..9437421 190..507 100 <- Minus
arm_2R 9437492..9437664 17..189 100   Minus

BO06018.complete Sequence

1393 bp (1393 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630229

> BO06018.complete
GAAGTTATCAGTCGACATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCGG
TTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAAT
GTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGGA
GCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGCA
GCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCATC
ATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAACG
TCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTCA
GCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCTG
CAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATGT
CCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTGA
CTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGTT
TGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGCA
ATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTCA
CACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGAG
GGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATCG
CAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGATG
GTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGTC
ATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGGA
CGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGACGC
CCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATCCAT
CCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCTTAG
CTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAGTAT
CCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAACAGG
CAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTATCC
CGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCTCCC
TAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTGGAC
GAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGAGAT
CGAGAACATGAAATTGTACGATGTGGCAAGCTTTCTAGACCAT

BO06018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RB 1362 CG33156-PB 1..1359 17..1375 6795 100 Plus
CG33156-RF 1353 CG33156-PF 163..1350 188..1375 5940 100 Plus
CG33156-RA 1365 CG33156-PA 176..1362 189..1375 5935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RB 1824 CG33156-RB 100..1458 17..1375 6795 100 Plus
CG33156-RF 1795 CG33156-RF 242..1429 188..1375 5940 100 Plus
CG33156-RA 1874 CG33156-RA 322..1508 189..1375 5935 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13548954..13549536 1090..508 2915 100 Minus
2R 25286936 2R 13549599..13549918 507..188 1600 100 Minus
2R 25286936 2R 13548610..13548896 1375..1089 1435 100 Minus
2R 25286936 2R 13549986..13550159 190..17 870 100 Minus
2R 25286936 2R 13538198..13538468 1090..820 770 85.6 Minus
2R 25286936 2R 13539104..13539359 438..180 600 83 Minus
2R 25286936 2R 13538625..13538855 738..508 585 83.5 Minus
2R 25286936 2R 13537799..13538051 1341..1089 545 81 Minus
Blast to na_te.dros performed on 2014-11-27 13:38:42 has no hits.

BO06018.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:54 Download gff for BO06018.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1362 17..1376 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:31 Download gff for BO06018.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 117..1475 17..1375 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:16 Download gff for BO06018.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 106..1458 23..1377 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:54 Download gff for BO06018.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 117..1475 17..1375 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:15 Download gff for BO06018.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 106..1458 23..1377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:15 Download gff for BO06018.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13549599..13549916 190..507 100 <- Minus
2R 13549987..13550153 23..189 100   Minus
2R 13548608..13548894 1091..1377 99 <- Minus
2R 13548954..13549536 508..1090 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:16 Download gff for BO06018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9436113..9436399 1091..1377 99 <- Minus
arm_2R 9436459..9437041 508..1090 100 <- Minus
arm_2R 9437104..9437421 190..507 100 <- Minus
arm_2R 9437492..9437658 23..189 100   Minus

BO06018.pep Sequence

Translation from 16 to 1393

> BO06018.pep
MFPLRPDQPQAVASFPLHSSLSIEEFNNVKWEDINDCNNNCIREEPILRP
KTNRHILRRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNEN
VRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPPV
MAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDRK
HEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYIT
SVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPIV
VPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCIC
AQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMKL
YDVASFLDH

BO06018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PB 453 CG33156-PB 1..453 1..453 2358 100 Plus
CG33156-PF 450 CG33156-PF 11..450 10..453 2052 90.5 Plus
CG33156-PA 454 CG33156-PA 60..454 59..453 2041 100 Plus
CG33156-PE 490 CG33156-PE 96..490 59..453 2041 100 Plus
CG33156-PC 375 CG33156-PC 1..375 79..453 1933 100 Plus