Clone BO06019 Report

Search the DGRC for BO06019

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG6540-RA
Protein status:BO06019.pep: validated full length
Sequenced Size:1027

Clone Sequence Records

BO06019.3prime Sequence

830 bp (703 high quality bases) assembled on 2005-12-02

> BO06019.3prime
ATGGTCTAGAAAGCTTGCCCAGCCGAATATCAGGTCCATGGCCTTGTCCA
TCAGACCGGAGCTCTTTTGCGGCACATCCTTCTGCGGCGATATGATGTTA
TCTTTGCGGGCCAGCTTGTACGACTGCTGGGAAAACGGTCGAATCGCACT
GGGGCTGGTGGGGGGATCTCCTATCTCTGCATTGGGCACAGAGCCGATGT
TCTCCTTATCGATCACCGACCTATCCGTGCAGCGCGACACGCCCACCATC
ACATTGCCGGCGATGATTTTTTCGTTGTAGTTCAGCGCCTTGTCGCTCTC
GATGCGCGAGGAGTAGCGCACATACATCCAGTTGCCGTTCTGCGGGGCAT
GCACCACGTCCACAATGGTGCCGCAGACGGTGAAGTGCTGCAGCACCATG
GAGCCGGCCCCCGGCGGGAACCCGAAGATGGTAACCCAAAAGTCGGATAG
GCGCGAGTTGCCGCCCGTCGTCACGGATGTGCCCAGGCCTCCAGCTGGCG
AGGCAGTGGCTCCAAGTGGCGAGCACAGTGCTCGCATCGAGGCATTGATG
GCATTGGGCGCCCCGGGTGCGAACGAGTCATTCGTGTGATAGCTGCTCTG
GTAGCTCTGGTTCGGTGACTGCAACTGCAGCATGCCAAGATGGTTCTTCT
TCTTCGGGGTGACGGACTGTTCGCGCAGCGAGTCGAAGAGTCCCTGGGTG
GGCGGTCCCGTCTGGTGGTGGCTGTGCGTCTGGCCGTGCGCGGTCGTTGA
GCTGTTGGCGCCCACAGCCGTGTGGGCGCCTCCTTGGGCGGCGAACAGAG
TGCGTGTGCTCAGAGCGGAGCGGTTGAGCT

BO06019.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-PA 996 CG6540-RA 182..993 830..19 4060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-RA 1249 CG6540-RA 306..1117 830..19 4060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18648546..18649357 830..19 4060 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:49:15 has no hits.

BO06019.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:30 Download gff for BO06019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 182..996 15..830 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:29 Download gff for BO06019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 182..996 15..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:03 Download gff for BO06019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 306..1121 14..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:11:56 Download gff for BO06019.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 306..1121 14..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:11:56 Download gff for BO06019.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18648546..18649361 14..830 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:03 Download gff for BO06019.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18542579..18543394 14..830 99   Minus

BO06019.5prime Sequence

817 bp (766 high quality bases) assembled on 2005-12-02

> BO06019.5prime
GAAGTTATCAGTCGACATGGAGCCAATGAATCTGGGCAGCCCGGTCAACA
GTCCTGGCTCCAACCAGACCCAGTATCTGCCACCTTTTCTGCTCGGCGAT
CCGCAAGGTATAACGCCGCACAAGAACACGCTGTCCCCGAAAACCGGGCG
CTCTAATATAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCGCACGAGC
TCAACCGCTCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCAAGGAGGC
GCCCACACGGCTGTGGGCGCCAACAGCTCAACGACCGCGCACGGCCAGAC
GCACAGCCACCACCAGACGGGACCGCCCACCCAGGGACTCTTCGACTCGC
TGCGCGAACAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGGCATGCTG
CAGTTGCAGTCACCGAACCAGAGCTACCAGAGCAGCTATCACACGAATGA
CTCGTTCGCACCCGGGGCGCCCAATGCCATCAATGCCTCGATGCGAGCAC
TGTGCTCGCCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCTGGGCACA
TCCGTGACGACGGGCGGCAACTCGCGCCTATCCGACTTTTGGGTTACCAT
CTTCGGGTTCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCACTTCACCG
TCTGCGGCACCATTGTGGACGTGGTGCATGCCCCGCAGAACGGCAACTGG
ATGTATGTGCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGCTGAACTA
CAACGAAAAAATCATCGCCGGCAATGTGATGGTGGGCGTGTCGCGCTGCA
CGGATAGGTCGGTGATC

BO06019.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-PA 996 CG6540-RA 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-RA 1249 CG6540-RA 120..925 12..817 4015 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18648515..18649165 167..817 3255 100 Plus
X 23542271 X 18648301..18648456 12..167 765 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 01:25:21 has no hits.

BO06019.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:31 Download gff for BO06019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:30 Download gff for BO06019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-PA 1..801 17..817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:45 Download gff for BO06019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 113..925 5..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:04 Download gff for BO06019.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 113..925 5..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:04 Download gff for BO06019.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18648294..18648456 5..167 97 -> Plus
X 18648516..18649165 168..817 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:45 Download gff for BO06019.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18542327..18542489 5..167 97 -> Plus
arm_X 18542549..18543198 168..817 100   Plus

BO06019.complete Sequence

1027 bp (1027 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630230

> BO06019.complete
GAAGTTATCAGTCGACATGGAGCCAATGAATCTGGGCAGCCCGGTCAACA
GTCCTGGCTCCAACCAGACCCAGTATCTGCCACCTTTTCTGCTCGGCGAT
CCGCAAGGTATAACGCCGCACAAGAACACGCTGTCCCCGAAAACCGGGCG
CTCTAATATAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCGCACGAGC
TCAACCGCTCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCAAGGAGGC
GCCCACACGGCTGTGGGCGCCAACAGCTCAACGACCGCGCACGGCCAGAC
GCACAGCCACCACCAGACGGGACCGCCCACCCAGGGACTCTTCGACTCGC
TGCGCGAACAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGGCATGCTG
CAGTTGCAGTCACCGAACCAGAGCTACCAGAGCAGCTATCACACGAATGA
CTCGTTCGCACCCGGGGCGCCCAATGCCATCAATGCCTCGATGCGAGCAC
TGTGCTCGCCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCTGGGCACA
TCCGTGACGACGGGCGGCAACTCGCGCCTATCCGACTTTTGGGTTACCAT
CTTCGGGTTCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCACTTCACCG
TCTGCGGCACCATTGTGGACGTGGTGCATGCCCCGCAGAACGGCAACTGG
ATGTATGTGCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGCTGAACTA
CAACGAAAAAATCATCGCCGGCAATGTGATGGTGGGCGTGTCGCGCTGCA
CGGATAGGTCGGTGATCGATAAGGAGAACATCGGCTCTGTGCCCAATGCA
GAGATAGGAGATCCCCCCACCAGCCCCAGTGCGATTCGACCGTTTTCCCA
GCAGTCGTACAAGCTGGCCCGCAAAGATAACATCATATCGCCGCAGAAGG
ATGTGCCGCAAAAGAGCTCCGGTCTGATGGACAAGGCCATGGACCTGATA
TTCGGCTGGGCAAGCTTTCTAGACCAT

BO06019.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-RA 996 CG6540-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-RA 1249 CG6540-RA 120..1117 12..1009 4975 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18648515..18649357 167..1009 4215 100 Plus
X 23542271 X 18648301..18648456 12..167 765 99.4 Plus
Blast to na_te.dros performed on 2014-11-27 10:07:11 has no hits.

BO06019.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:24 Download gff for BO06019.complete
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 1..996 17..1013 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:39 Download gff for BO06019.complete
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 108..1116 5..1014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:53 Download gff for BO06019.complete
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 125..1117 17..1011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:24 Download gff for BO06019.complete
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 108..1116 5..1014 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:31 Download gff for BO06019.complete
Subject Subject Range Query Range Percent Splice Strand
CG6540-RA 125..1117 17..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:31 Download gff for BO06019.complete
Subject Subject Range Query Range Percent Splice Strand
X 18648306..18648456 17..167 100 -> Plus
X 18648516..18649357 168..1011 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:53 Download gff for BO06019.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18542339..18542489 17..167 100 -> Plus
arm_X 18542549..18543390 168..1011 99   Plus

BO06019.pep Sequence

Translation from 16 to 1027

> BO06019.pep
MEPMNLGSPVNSPGSNQTQYLPPFLLGDPQGITPHKNTLSPKTGRSNISF
ATSPGGSSPHELNRSALSTRTLFAAQGGAHTAVGANSSTTAHGQTHSHHQ
TGPPTQGLFDSLREQSVTPKKKNHLGMLQLQSPNQSYQSSYHTNDSFAPG
APNAINASMRALCSPLGATASPAGGLGTSVTTGGNSRLSDFWVTIFGFPP
GAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNEKII
AGNVMVGVSRCTDRSVIDKENIGSVPNAEIGDPPTSPSAIRPFSQQSYKL
ARKDNIISPQKDVPQKSSGLMDKAMDLIFGWASFLDH

BO06019.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6540-PA 331 CG6540-PA 1..331 1..331 1746 100 Plus