Clone Sequence Records
BO06021.3prime Sequence
839 bp (830 high quality bases) assembled on 2005-12-02
> BO06021.3prime
ATGGTCTAGAAAGCTTGCCTTGTCATCCTCATCCTCTTCCTCTTCCTCGC
CTTCTCCATCCTCACCGTCCTCGTCGTCAAATGCCTCCTCATCATTATCT
TCGTTGTCCTCCTCGTCCTCGGGCTCCACCTCGATATCAGGTACCAGATA
ATACTGCAGTGGATTTGGCCAAAGGTCGTCTTTTATCAGTTCTGCGATCT
CGTCGTTGACGGGATCGGTGTTATCCGAGAACCAATCGAAGAAGGTTTTG
TATTCGGAGTTGCGCTTCTTCTTGTTTCCGTACGGCTTTGTCAGCAAAAG
TTTTAGCAGGTTCTTTCCCTCCTTCCATTTGATGGGCGTGCTGGTAGACG
CGGGCCAGTCTCCGTTCTCGGAAGCAGCCGCTGAATTCAGGTGGAACTCT
TTGGTGAGCACCTTGTTTTCGAAGTAAGGATTCTCGTCGAAATGGAAGTT
GATGCGGTAACCCGATTTGATGTCCTCAAACTCCTCAACCTCAAGTTTGT
TGAGCGCGTGCAGGCACTCCTCCTCCTCCTCGTCCAGAATGCCGGATACT
TGCGGGTGGTTGATAAACGAGGTCACCCAAAAGTTGGGGATGCGCTTGAC
CAGCTCGCTGCGCTTCTCGTAGCAGGGCTTCCGCAGCTTGTTGTACTTCT
GCTCCACCTTGAGGATCTCCTCGCTGGCCTTCTCGTTCAGCGCATCGATC
TCGTTCTGGCAGGCATCAATTTGCTCCAACGCCTCCGACTCCTCCTCGTT
GTTACCGGCGGCGGCGGATGTGTTGCCATCGGCGGGGGCGCCGTCCAGCT
TGGCTCGCTTTGGCACGCTCGACATGTCGACTGATAACT
BO06021.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4299-PA | 810 | Set-RA | 1..807 | 825..19 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..942 | 825..19 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 378..27 | 1760 | 100 | Minus |
3R | 32079331 | 3R | 15263687..15263944 | 825..568 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 15264352..15264542 | 568..378 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:50:38 has no hits.
BO06021.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:33 Download gff for
BO06021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-PA | 1..810 | 15..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:32 Download gff for
BO06021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4299-PA | 1..810 | 15..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:50 Download gff for
BO06021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 12..828 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:04 Download gff for
BO06021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 12..828 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:04 Download gff for
BO06021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263685..15263944 | 568..828 | 99 | -> | Minus |
3R | 15264353..15264542 | 378..567 | 100 | -> | Minus |
3R | 15264605..15264955 | 27..377 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:50 Download gff for
BO06021.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11090075..11090264 | 378..567 | 100 | -> | Minus |
arm_3R | 11089407..11089666 | 568..828 | 99 | -> | Minus |
arm_3R | 11090327..11090677 | 27..377 | 100 | | Minus |
BO06021.5prime Sequence
839 bp (797 high quality bases) assembled on 2005-12-02
> BO06021.5prime
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGGCAAGCTTTCTAGACC
BO06021.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4299-PA | 810 | Set-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..942 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 464..815 | 1760 | 100 | Plus |
3R | 32079331 | 3R | 15263687..15263944 | 17..274 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 15264352..15264542 | 274..464 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:04:30 has no hits.
BO06021.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:34 Download gff for
BO06021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-PA | 1..810 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:33 Download gff for
BO06021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4299-PA | 1..810 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:37 Download gff for
BO06021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 14..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:29 Download gff for
BO06021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 134..948 | 14..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:29 Download gff for
BO06021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263685..15263944 | 14..274 | 99 | -> | Plus |
3R | 15264353..15264542 | 275..464 | 100 | -> | Plus |
3R | 15264605..15264955 | 465..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:37 Download gff for
BO06021.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11089407..11089666 | 14..274 | 99 | -> | Plus |
arm_3R | 11090075..11090264 | 275..464 | 100 | -> | Plus |
arm_3R | 11090327..11090677 | 465..815 | 100 | | Plus |
BO06021.complete Sequence
841 bp (841 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630231
> BO06021.complete
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGGCAAGCTTTCTAGACCAT
BO06021.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 810 | CG4299-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-RA | 1169 | CG4299-RA | 136..942 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15264604..15264955 | 464..815 | 1760 | 100 | Plus |
3R | 32079331 | 3R | 15263687..15263944 | 17..274 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 15264352..15264542 | 274..464 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:48:15 has no hits.
BO06021.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:55 Download gff for
BO06021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 1..810 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:33 Download gff for
BO06021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 151..965 | 14..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:49 Download gff for
BO06021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 136..942 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:56 Download gff for
BO06021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 151..965 | 14..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:14 Download gff for
BO06021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Set-RA | 136..942 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:14 Download gff for
BO06021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15263687..15263944 | 17..274 | 100 | -> | Plus |
3R | 15264353..15264542 | 275..464 | 100 | -> | Plus |
3R | 15264605..15264955 | 465..815 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:49 Download gff for
BO06021.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11089409..11089666 | 17..274 | 100 | -> | Plus |
arm_3R | 11090075..11090264 | 275..464 | 100 | -> | Plus |
arm_3R | 11090327..11090677 | 465..815 | 100 | | Plus |
BO06021.pep Sequence
Translation from 16 to 841
> BO06021.pep
MSSVPKRAKLDGAPADGNTSAAAGNNEEESEALEQIDACQNEIDALNEKA
SEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEE
EEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAA
ASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS
DNTDPVNDEIAELIKDDLWPNPLQYYLVPDIEVEPEDEEDNEDNDEEAFD
DEDGEDGEGEEEEEDEDDKASFLDH
BO06021.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Set-PA | 269 | CG4299-PA | 1..269 | 1..269 | 1438 | 100 | Plus |
Nap1-PC | 370 | CG5330-PC | 64..353 | 42..259 | 206 | 24.3 | Plus |
Nap1-PB | 370 | CG5330-PB | 64..353 | 42..259 | 206 | 24.3 | Plus |
Nap1-PA | 370 | CG5330-PA | 64..353 | 42..259 | 206 | 24.3 | Plus |
mil-PA | 283 | CG5017-PA | 28..283 | 27..269 | 168 | 22.7 | Plus |