Clone BO06021 Report

Search the DGRC for BO06021

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptSet-RA
Protein status:BO06021.pep: validated full length
Sequenced Size:841

Clone Sequence Records

BO06021.3prime Sequence

839 bp (830 high quality bases) assembled on 2005-12-02

> BO06021.3prime
ATGGTCTAGAAAGCTTGCCTTGTCATCCTCATCCTCTTCCTCTTCCTCGC
CTTCTCCATCCTCACCGTCCTCGTCGTCAAATGCCTCCTCATCATTATCT
TCGTTGTCCTCCTCGTCCTCGGGCTCCACCTCGATATCAGGTACCAGATA
ATACTGCAGTGGATTTGGCCAAAGGTCGTCTTTTATCAGTTCTGCGATCT
CGTCGTTGACGGGATCGGTGTTATCCGAGAACCAATCGAAGAAGGTTTTG
TATTCGGAGTTGCGCTTCTTCTTGTTTCCGTACGGCTTTGTCAGCAAAAG
TTTTAGCAGGTTCTTTCCCTCCTTCCATTTGATGGGCGTGCTGGTAGACG
CGGGCCAGTCTCCGTTCTCGGAAGCAGCCGCTGAATTCAGGTGGAACTCT
TTGGTGAGCACCTTGTTTTCGAAGTAAGGATTCTCGTCGAAATGGAAGTT
GATGCGGTAACCCGATTTGATGTCCTCAAACTCCTCAACCTCAAGTTTGT
TGAGCGCGTGCAGGCACTCCTCCTCCTCCTCGTCCAGAATGCCGGATACT
TGCGGGTGGTTGATAAACGAGGTCACCCAAAAGTTGGGGATGCGCTTGAC
CAGCTCGCTGCGCTTCTCGTAGCAGGGCTTCCGCAGCTTGTTGTACTTCT
GCTCCACCTTGAGGATCTCCTCGCTGGCCTTCTCGTTCAGCGCATCGATC
TCGTTCTGGCAGGCATCAATTTGCTCCAACGCCTCCGACTCCTCCTCGTT
GTTACCGGCGGCGGCGGATGTGTTGCCATCGGCGGGGGCGCCGTCCAGCT
TGGCTCGCTTTGGCACGCTCGACATGTCGACTGATAACT

BO06021.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4299-PA 810 Set-RA 1..807 825..19 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:50:42
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 1169 CG4299-RA 136..942 825..19 4035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15264604..15264955 378..27 1760 100 Minus
3R 32079331 3R 15263687..15263944 825..568 1290 100 Minus
3R 32079331 3R 15264352..15264542 568..378 955 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:50:38 has no hits.

BO06021.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:33 Download gff for BO06021.3prime
Subject Subject Range Query Range Percent Splice Strand
Set-PA 1..810 15..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:32 Download gff for BO06021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4299-PA 1..810 15..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:50 Download gff for BO06021.3prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 12..828 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:04 Download gff for BO06021.3prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 12..828 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:04 Download gff for BO06021.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15263685..15263944 568..828 99 -> Minus
3R 15264353..15264542 378..567 100 -> Minus
3R 15264605..15264955 27..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:50 Download gff for BO06021.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11090075..11090264 378..567 100 -> Minus
arm_3R 11089407..11089666 568..828 99 -> Minus
arm_3R 11090327..11090677 27..377 100   Minus

BO06021.5prime Sequence

839 bp (797 high quality bases) assembled on 2005-12-02

> BO06021.5prime
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGGCAAGCTTTCTAGACC

BO06021.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4299-PA 810 Set-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 1169 CG4299-RA 136..942 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15264604..15264955 464..815 1760 100 Plus
3R 32079331 3R 15263687..15263944 17..274 1290 100 Plus
3R 32079331 3R 15264352..15264542 274..464 955 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:04:30 has no hits.

BO06021.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:34 Download gff for BO06021.5prime
Subject Subject Range Query Range Percent Splice Strand
Set-PA 1..810 17..827 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:33 Download gff for BO06021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4299-PA 1..810 17..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:37 Download gff for BO06021.5prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 14..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:29 Download gff for BO06021.5prime
Subject Subject Range Query Range Percent Splice Strand
Set-RA 134..948 14..830 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:29 Download gff for BO06021.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15263685..15263944 14..274 99 -> Plus
3R 15264353..15264542 275..464 100 -> Plus
3R 15264605..15264955 465..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:37 Download gff for BO06021.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11089407..11089666 14..274 99 -> Plus
arm_3R 11090075..11090264 275..464 100 -> Plus
arm_3R 11090327..11090677 465..815 100   Plus

BO06021.complete Sequence

841 bp (841 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630231

> BO06021.complete
GAAGTTATCAGTCGACATGTCGAGCGTGCCAAAGCGAGCCAAGCTGGACG
GCGCCCCCGCCGATGGCAACACATCCGCCGCCGCCGGTAACAACGAGGAG
GAGTCGGAGGCGTTGGAGCAAATTGATGCCTGCCAGAACGAGATCGATGC
GCTGAACGAGAAGGCCAGCGAGGAGATCCTCAAGGTGGAGCAGAAGTACA
ACAAGCTGCGGAAGCCCTGCTACGAGAAGCGCAGCGAGCTGGTCAAGCGC
ATCCCCAACTTTTGGGTGACCTCGTTTATCAACCACCCGCAAGTATCCGG
CATTCTGGACGAGGAGGAGGAGGAGTGCCTGCACGCGCTCAACAAACTTG
AGGTTGAGGAGTTTGAGGACATCAAATCGGGTTACCGCATCAACTTCCAT
TTCGACGAGAATCCTTACTTCGAAAACAAGGTGCTCACCAAAGAGTTCCA
CCTGAATTCAGCGGCTGCTTCCGAGAACGGAGACTGGCCCGCGTCTACCA
GCACGCCCATCAAATGGAAGGAGGGAAAGAACCTGCTAAAACTTTTGCTG
ACAAAGCCGTACGGAAACAAGAAGAAGCGCAACTCCGAATACAAAACCTT
CTTCGATTGGTTCTCGGATAACACCGATCCCGTCAACGACGAGATCGCAG
AACTGATAAAAGACGACCTTTGGCCAAATCCACTGCAGTATTATCTGGTA
CCTGATATCGAGGTGGAGCCCGAGGACGAGGAGGACAACGAAGATAATGA
TGAGGAGGCATTTGACGACGAGGACGGTGAGGATGGAGAAGGCGAGGAAG
AGGAAGAGGATGAGGATGACAAGGCAAGCTTTCTAGACCAT

BO06021.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 810 CG4299-PA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Set-RA 1169 CG4299-RA 136..942 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15264604..15264955 464..815 1760 100 Plus
3R 32079331 3R 15263687..15263944 17..274 1290 100 Plus
3R 32079331 3R 15264352..15264542 274..464 955 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:48:15 has no hits.

BO06021.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:55 Download gff for BO06021.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 1..810 17..827 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:33 Download gff for BO06021.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 151..965 14..830 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:49 Download gff for BO06021.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 136..942 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:56 Download gff for BO06021.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 151..965 14..830 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:14 Download gff for BO06021.complete
Subject Subject Range Query Range Percent Splice Strand
Set-RA 136..942 17..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:14 Download gff for BO06021.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15263687..15263944 17..274 100 -> Plus
3R 15264353..15264542 275..464 100 -> Plus
3R 15264605..15264955 465..815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:49 Download gff for BO06021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11089409..11089666 17..274 100 -> Plus
arm_3R 11090075..11090264 275..464 100 -> Plus
arm_3R 11090327..11090677 465..815 100   Plus

BO06021.pep Sequence

Translation from 16 to 841

> BO06021.pep
MSSVPKRAKLDGAPADGNTSAAAGNNEEESEALEQIDACQNEIDALNEKA
SEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHPQVSGILDEE
EEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAA
ASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS
DNTDPVNDEIAELIKDDLWPNPLQYYLVPDIEVEPEDEEDNEDNDEEAFD
DEDGEDGEGEEEEEDEDDKASFLDH

BO06021.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
Set-PA 269 CG4299-PA 1..269 1..269 1438 100 Plus
Nap1-PC 370 CG5330-PC 64..353 42..259 206 24.3 Plus
Nap1-PB 370 CG5330-PB 64..353 42..259 206 24.3 Plus
Nap1-PA 370 CG5330-PA 64..353 42..259 206 24.3 Plus
mil-PA 283 CG5017-PA 28..283 27..269 168 22.7 Plus