Clone BO06022 Report

Search the DGRC for BO06022

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptSdhB-RA
Protein status:BO06022.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO06022.3prime Sequence

854 bp (765 high quality bases) assembled on 2005-12-02

> BO06022.3prime
ATGGTCTAGAAAGCTTGCCTTGTGCAGCGCCGCCGTCTCCAGCTTCGGAG
CCGGCTTGGAGGCCAGGCCCGAGAGCAGCTTCTTGATCTCGGCGATGGCA
CGGCCGGGATTGAGCCCCTTGGGGCAGGTGCGCGTGCAGTTCATGATCGT
GTGGCACCGGTAGACGCTGAAGGGGTCCTTCAACTTGTTCAGACGCTCGG
CGGAGTTCTCGTCACGCGAGTCGATGATCCAGCGGTAGGCCTGCATCAGC
ACGGCGGGGCCCAGGTACTTCTCGGCGTTCCACCAGTACGAGGGGCACGA
GGTGGAGCAGCAGGCGCACAGGATGCACTCGTACAGGCCGTCCAACTTGG
AGCGATCCTCGACGGACTGCAGGTACTGGGCCTTGCCCTTCTTCTCGCCC
GCTTCGTTCTTGCGCTGCAGCCAGGGCTGGATGTTGCGGTACTGCTCGTA
GAAGTTGTTCATGTCCGGGACCAGGTCGCGCACCACGTACATATGGGGCA
GCGGGTACACCTTCAGCGACTTGGAGGTGTTGATGTCGATCTTGCTGATG
CAGGCCAGCGTGTTGGTGCCGCCGATGTTCATGGCGCAGGAGCCGCAGAT
GCCCTCGCGACAGGAGCGCCTAAAGGTGAGCGTGGGGTCCATCTCGTTCT
TGATCTTGATCAGCGCGTCCAGCACCATGGGGCCGCACTCGCGCAGGTCC
ACCTCGTAGGTCTGCATGTACGGCTTCTCGCCGGCGTTGTCCGGGTTCCA
GCGGTAGATCTCGAACTTCTTGATCTGCGGCTCCTGGGCCTCCTTGGGCT
GCGCCTGCTGCTCCAGCTGGGCGGTGCCATTGCTGATGGCGCGCATCTGG
TTCC

BO06022.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3283-PA 894 SdhB-RA 56..891 854..19 4180 100 Minus
CG7349-PA 1314 CG7349-RA 635..750 689..574 455 95.6 Minus
CG7349-PA 1314 CG7349-RA 977..1014 344..307 165 97.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 185..1020 854..19 4180 100 Minus
CG7349-RC 1949 CG7349-RC 815..1430 725..107 1055 79.2 Minus
CG7349-RA 1888 CG7349-RA 754..1369 725..107 1055 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 849..409 2205 100 Minus
2R 25286936 2R 6808579..6808973 413..19 1960 99.7 Minus
X 23542271 X 18895391..18895889 725..224 845 78.8 Minus
Blast to na_te.dros performed on 2015-02-11 04:57:24 has no hits.

BO06022.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:35 Download gff for BO06022.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-PA 56..894 18..854 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:34 Download gff for BO06022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3283-PA 56..894 18..854 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:00 Download gff for BO06022.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 185..1020 19..854 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:21 Download gff for BO06022.3prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 185..1020 19..854 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:21 Download gff for BO06022.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6808079..6808526 410..854 99 -> Minus
2R 6808583..6808973 19..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:00 Download gff for BO06022.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695584..2696031 410..854 99 -> Minus
arm_2R 2696088..2696478 19..409 100   Minus

BO06022.5prime Sequence

796 bp (744 high quality bases) assembled on 2005-12-02

> BO06022.5prime
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGC

BO06022.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3283-PA 894 SdhB-RA 1..780 17..796 3900 100 Plus
CG7349-PA 1314 CG7349-RA 635..750 237..352 455 95.6 Plus
CG7349-PA 1314 CG7349-RA 977..1014 582..619 165 97.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 130..909 17..796 3900 100 Plus
CG7349-RC 1949 CG7349-RC 815..1403 201..792 1025 79.4 Plus
CG7349-RA 1888 CG7349-RA 754..1342 201..792 1025 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 77..517 2205 100 Plus
2R 25286936 2R 6808579..6808862 513..796 1405 99.6 Plus
X 23542271 X 18895391..18895889 201..702 845 78.8 Plus
2R 25286936 2R 6807755..6807817 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:42:06 has no hits.

BO06022.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:36 Download gff for BO06022.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:35 Download gff for BO06022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3283-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:54 Download gff for BO06022.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 122..909 9..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:52 Download gff for BO06022.5prime
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 122..909 9..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:52 Download gff for BO06022.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6807747..6807817 9..79 94 -> Plus
2R 6808090..6808526 80..516 100 -> Plus
2R 6808583..6808862 517..796 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:54 Download gff for BO06022.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695252..2695322 9..79 94 -> Plus
arm_2R 2695595..2696031 80..516 100 -> Plus
arm_2R 2696088..2696367 517..796 100   Plus

BO06022.complete Sequence

925 bp (925 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630232

> BO06022.complete
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGCACCT
GCCCCAAGGGGCTCAATCCCGGCCGTGCCATCGCCGAGATCAAGAAGCTG
CTCTCGGGCCTGGCCTCCAAGCCGGCTCCGAAGCTGGAGACGGCGGCGCT
GCACAAGGCAAGCTTTCTAGACCAT

BO06022.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 894 CG3283-PA 1..891 17..907 4455 100 Plus
CG7349-RC 1314 CG7349-PC 599..1214 201..819 935 77.5 Plus
CG7349-RA 1314 CG7349-PA 599..1214 201..819 935 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-RA 1219 CG3283-RA 130..1020 17..907 4455 100 Plus
CG7349-RC 1949 CG7349-RC 815..1430 201..819 935 77.5 Plus
CG7349-RA 1888 CG7349-RA 754..1369 201..819 935 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6808087..6808527 77..517 2205 100 Plus
2R 25286936 2R 6808579..6808973 513..907 1960 99.7 Plus
X 23542271 X 18895391..18895889 201..702 845 78.8 Plus
2R 25286936 2R 6807755..6807817 17..79 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:48:24 has no hits.

BO06022.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:57 Download gff for BO06022.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 1..894 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:35 Download gff for BO06022.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 137..1035 9..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:48 Download gff for BO06022.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 135..1020 22..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:57 Download gff for BO06022.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 137..1035 9..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:44 Download gff for BO06022.complete
Subject Subject Range Query Range Percent Splice Strand
SdhB-RA 135..1020 22..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:44 Download gff for BO06022.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6807760..6807817 22..79 100 -> Plus
2R 6808090..6808526 80..516 100 -> Plus
2R 6808583..6808973 517..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:48 Download gff for BO06022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2695265..2695322 22..79 100 -> Plus
arm_2R 2695595..2696031 80..516 100 -> Plus
arm_2R 2696088..2696478 517..909 99   Plus

BO06022.pep Sequence

Translation from 16 to 925

> BO06022.pep
MLATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFE
IYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSC
REGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDM
NNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCAC
CSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVY
RCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPAPKLETAALHKASF
LDH

BO06022.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
SdhB-PA 297 CG3283-PA 1..297 1..297 1586 100 Plus
CG7349-PC 437 CG7349-PC 175..432 34..295 1032 71.8 Plus
CG7349-PA 437 CG7349-PA 175..432 34..295 1032 71.8 Plus