Clone Sequence Records
BO06022.3prime Sequence
854 bp (765 high quality bases) assembled on 2005-12-02
> BO06022.3prime
ATGGTCTAGAAAGCTTGCCTTGTGCAGCGCCGCCGTCTCCAGCTTCGGAG
CCGGCTTGGAGGCCAGGCCCGAGAGCAGCTTCTTGATCTCGGCGATGGCA
CGGCCGGGATTGAGCCCCTTGGGGCAGGTGCGCGTGCAGTTCATGATCGT
GTGGCACCGGTAGACGCTGAAGGGGTCCTTCAACTTGTTCAGACGCTCGG
CGGAGTTCTCGTCACGCGAGTCGATGATCCAGCGGTAGGCCTGCATCAGC
ACGGCGGGGCCCAGGTACTTCTCGGCGTTCCACCAGTACGAGGGGCACGA
GGTGGAGCAGCAGGCGCACAGGATGCACTCGTACAGGCCGTCCAACTTGG
AGCGATCCTCGACGGACTGCAGGTACTGGGCCTTGCCCTTCTTCTCGCCC
GCTTCGTTCTTGCGCTGCAGCCAGGGCTGGATGTTGCGGTACTGCTCGTA
GAAGTTGTTCATGTCCGGGACCAGGTCGCGCACCACGTACATATGGGGCA
GCGGGTACACCTTCAGCGACTTGGAGGTGTTGATGTCGATCTTGCTGATG
CAGGCCAGCGTGTTGGTGCCGCCGATGTTCATGGCGCAGGAGCCGCAGAT
GCCCTCGCGACAGGAGCGCCTAAAGGTGAGCGTGGGGTCCATCTCGTTCT
TGATCTTGATCAGCGCGTCCAGCACCATGGGGCCGCACTCGCGCAGGTCC
ACCTCGTAGGTCTGCATGTACGGCTTCTCGCCGGCGTTGTCCGGGTTCCA
GCGGTAGATCTCGAACTTCTTGATCTGCGGCTCCTGGGCCTCCTTGGGCT
GCGCCTGCTGCTCCAGCTGGGCGGTGCCATTGCTGATGGCGCGCATCTGG
TTCC
BO06022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3283-PA | 894 | SdhB-RA | 56..891 | 854..19 | 4180 | 100 | Minus |
CG7349-PA | 1314 | CG7349-RA | 635..750 | 689..574 | 455 | 95.6 | Minus |
CG7349-PA | 1314 | CG7349-RA | 977..1014 | 344..307 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 185..1020 | 854..19 | 4180 | 100 | Minus |
CG7349-RC | 1949 | CG7349-RC | 815..1430 | 725..107 | 1055 | 79.2 | Minus |
CG7349-RA | 1888 | CG7349-RA | 754..1369 | 725..107 | 1055 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 849..409 | 2205 | 100 | Minus |
2R | 25286936 | 2R | 6808579..6808973 | 413..19 | 1960 | 99.7 | Minus |
X | 23542271 | X | 18895391..18895889 | 725..224 | 845 | 78.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:24 has no hits.
BO06022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:35 Download gff for
BO06022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-PA | 56..894 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:34 Download gff for
BO06022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3283-PA | 56..894 | 18..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:00 Download gff for
BO06022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 185..1020 | 19..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:21 Download gff for
BO06022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 185..1020 | 19..854 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:21 Download gff for
BO06022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6808079..6808526 | 410..854 | 99 | -> | Minus |
2R | 6808583..6808973 | 19..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:00 Download gff for
BO06022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695584..2696031 | 410..854 | 99 | -> | Minus |
arm_2R | 2696088..2696478 | 19..409 | 100 | | Minus |
BO06022.5prime Sequence
796 bp (744 high quality bases) assembled on 2005-12-02
> BO06022.5prime
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGC
BO06022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3283-PA | 894 | SdhB-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG7349-PA | 1314 | CG7349-RA | 635..750 | 237..352 | 455 | 95.6 | Plus |
CG7349-PA | 1314 | CG7349-RA | 977..1014 | 582..619 | 165 | 97.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 130..909 | 17..796 | 3900 | 100 | Plus |
CG7349-RC | 1949 | CG7349-RC | 815..1403 | 201..792 | 1025 | 79.4 | Plus |
CG7349-RA | 1888 | CG7349-RA | 754..1342 | 201..792 | 1025 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 77..517 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 6808579..6808862 | 513..796 | 1405 | 99.6 | Plus |
X | 23542271 | X | 18895391..18895889 | 201..702 | 845 | 78.8 | Plus |
2R | 25286936 | 2R | 6807755..6807817 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:42:06 has no hits.
BO06022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:36 Download gff for
BO06022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:35 Download gff for
BO06022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3283-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:54 Download gff for
BO06022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 122..909 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:52 Download gff for
BO06022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 122..909 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:52 Download gff for
BO06022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6807747..6807817 | 9..79 | 94 | -> | Plus |
2R | 6808090..6808526 | 80..516 | 100 | -> | Plus |
2R | 6808583..6808862 | 517..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:54 Download gff for
BO06022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695252..2695322 | 9..79 | 94 | -> | Plus |
arm_2R | 2695595..2696031 | 80..516 | 100 | -> | Plus |
arm_2R | 2696088..2696367 | 517..796 | 100 | | Plus |
BO06022.complete Sequence
925 bp (925 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630232
> BO06022.complete
GAAGTTATCAGTCGACATGTTGGCGACCGAGGCGAGACAGATCCTGAGCC
GCGTGGGATCCCTGGTGGCCAGGAACCAGATGCGCGCCATCAGCAATGGC
ACCGCCCAGCTGGAGCAGCAGGCGCAGCCCAAGGAGGCCCAGGAGCCGCA
GATCAAGAAGTTCGAGATCTACCGCTGGAACCCGGACAACGCCGGCGAGA
AGCCGTACATGCAGACCTACGAGGTGGACCTGCGCGAGTGCGGCCCCATG
GTGCTGGACGCGCTGATCAAGATCAAGAACGAGATGGACCCCACGCTCAC
CTTTAGGCGCTCCTGTCGCGAGGGCATCTGCGGCTCCTGCGCCATGAACA
TCGGCGGCACCAACACGCTGGCCTGCATCAGCAAGATCGACATCAACACC
TCCAAGTCGCTGAAGGTGTACCCGCTGCCCCATATGTACGTGGTGCGCGA
CCTGGTCCCGGACATGAACAACTTCTACGAGCAGTACCGCAACATCCAGC
CCTGGCTGCAGCGCAAGAACGAAGCGGGCGAGAAGAAGGGCAAGGCCCAG
TACCTGCAGTCCGTCGAGGATCGCTCCAAGTTGGACGGCCTGTACGAGTG
CATCCTGTGCGCCTGCTGCTCCACCTCGTGCCCCTCGTACTGGTGGAACG
CCGAGAAGTACCTGGGCCCCGCCGTGCTGATGCAGGCCTACCGCTGGATC
ATCGACTCGCGTGACGAGAACTCCGCCGAGCGTCTGAACAAGTTGAAGGA
CCCCTTCAGCGTCTACCGGTGCCACACGATCATGAACTGCACGCGCACCT
GCCCCAAGGGGCTCAATCCCGGCCGTGCCATCGCCGAGATCAAGAAGCTG
CTCTCGGGCCTGGCCTCCAAGCCGGCTCCGAAGCTGGAGACGGCGGCGCT
GCACAAGGCAAGCTTTCTAGACCAT
BO06022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 894 | CG3283-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
CG7349-RC | 1314 | CG7349-PC | 599..1214 | 201..819 | 935 | 77.5 | Plus |
CG7349-RA | 1314 | CG7349-PA | 599..1214 | 201..819 | 935 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-RA | 1219 | CG3283-RA | 130..1020 | 17..907 | 4455 | 100 | Plus |
CG7349-RC | 1949 | CG7349-RC | 815..1430 | 201..819 | 935 | 77.5 | Plus |
CG7349-RA | 1888 | CG7349-RA | 754..1369 | 201..819 | 935 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6808087..6808527 | 77..517 | 2205 | 100 | Plus |
2R | 25286936 | 2R | 6808579..6808973 | 513..907 | 1960 | 99.7 | Plus |
X | 23542271 | X | 18895391..18895889 | 201..702 | 845 | 78.8 | Plus |
2R | 25286936 | 2R | 6807755..6807817 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:48:24 has no hits.
BO06022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:57 Download gff for
BO06022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 1..894 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:35 Download gff for
BO06022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 137..1035 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:48 Download gff for
BO06022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 135..1020 | 22..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:57 Download gff for
BO06022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 137..1035 | 9..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:44 Download gff for
BO06022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SdhB-RA | 135..1020 | 22..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:44 Download gff for
BO06022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6807760..6807817 | 22..79 | 100 | -> | Plus |
2R | 6808090..6808526 | 80..516 | 100 | -> | Plus |
2R | 6808583..6808973 | 517..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:48 Download gff for
BO06022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2695265..2695322 | 22..79 | 100 | -> | Plus |
arm_2R | 2695595..2696031 | 80..516 | 100 | -> | Plus |
arm_2R | 2696088..2696478 | 517..909 | 99 | | Plus |
BO06022.pep Sequence
Translation from 16 to 925
> BO06022.pep
MLATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFE
IYRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSC
REGICGSCAMNIGGTNTLACISKIDINTSKSLKVYPLPHMYVVRDLVPDM
NNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCAC
CSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVY
RCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPAPKLETAALHKASF
LDH
BO06022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SdhB-PA | 297 | CG3283-PA | 1..297 | 1..297 | 1586 | 100 | Plus |
CG7349-PC | 437 | CG7349-PC | 175..432 | 34..295 | 1032 | 71.8 | Plus |
CG7349-PA | 437 | CG7349-PA | 175..432 | 34..295 | 1032 | 71.8 | Plus |