Clone Sequence Records
BO06023.3prime Sequence
911 bp (748 high quality bases) assembled on 2005-12-02
> BO06023.3prime
ATGGTCTAGAAAGCTTGCGTGTATCAGCTTCTGGGATCGAGCCAGATCCA
GTTGCGCCGAGGAGACGCTCGTTAGACCCTCGCGCACTGTGCTGAGGTTC
TCCTTCCATGCCTGCAGCAAATCGCGAAGCTGCTCCCATTGTGGTGCTCC
AAAGGTTCGGTGCATTGTCGATGAGATGTGTACCTTTTGATTGGCCTGAT
CTAGTCGTGCGCGTACCAGCTTTGTTTTCAGCACCTCGATGACGAAGGGC
TCCACCTCGTCTTCGTTGATCTGCAGCTCCTTGGTAAGCGTTTCGAATGT
CATCTCCGGGCTGCTCTCGGCCAGCTGCATGAAGGTCAGCAGACGCATCT
TCTTCATGTTCTGCTCATGGTTCAATCCTTGCGAGTTGACAAACTCCCTG
TGATCCTCGTAGAACTGCACGTACGCTGGCAGCTTCTCGGACACGAAGAT
GGACAGCAGGTCGTGGATGAGGTCGCCTTCCAAAAAGCGCACAGGCTTCA
GCGACAGCAGAGGATCCAGCAGGAATGTATTGGGGTCGGCCAAGGCAGTC
ACAATGCACTTCATGGCATCCTCACGGGCAACACAAGCATTGTCCGCCGT
GTAGGTGCCCAGCAGCTCAATCATAACCTTGGAAGACAGCTCCAGGTTGG
TGTCCTTGGTCACGTCGTGCAGCAGGCGGTACAGCTTCTGCATCTGTTCC
GACGAAGGTGGGCAGTTGGCAAACTGGGATTTGAGCTGATCCACACCTGA
GAAGACCTCCAGCACCTGTTCGCACTGCTTGGCCACCTGGACCAGGTGGT
AGTACACATGGTAGCGTAAGGGAGAGGCGGTGTCCAGGTTGTTGAACAGA
CGCCACAACGACTGAAGGCACACCTTGCCCAATGGAAGATTGGGAGCCTT
GGTCATCTTCT
BO06023.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8309-PA | 1164 | CG8309-RA | 269..1161 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1386 | CG8309-RB | 359..1251 | 911..19 | 4465 | 100 | Minus |
| Tango7-RA | 1590 | CG8309-RA | 563..1455 | 911..19 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14163201..14164093 | 19..911 | 4465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:01:12 has no hits.
BO06023.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:37 Download gff for
BO06023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 269..1164 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:36 Download gff for
BO06023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 269..1164 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:29 Download gff for
BO06023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 563..1460 | 13..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:38 Download gff for
BO06023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 563..1460 | 13..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:38 Download gff for
BO06023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14163196..14164093 | 13..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:29 Download gff for
BO06023.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10050701..10051598 | 13..911 | 99 | | Plus |
BO06023.5prime Sequence
897 bp (714 high quality bases) assembled on 2005-12-02
> BO06023.5prime
GAAGTTATCAGTCGACATGACTTCGCATCCGGTTTTCATAGACCTGTCCC
TGGACGAGCAGGTGCAAGAGCTGCGCAAGTATTTCAAGAAGCTGGGAGCC
GAAATCTCATCGGAGAAGTCCAATAAAGGTGTGGAGGATGATTTGCACAA
GATCATCGGCGTCTGCGACGTTTGCTTTAAGGATGGTGAGCCCTCGCAGA
TTGATGGAATTCTAAACAGCATTGTGTCCATCATGATCACGATACCCCTG
GATCGCGGTGAGAACATTGTCCTGGCCTACTGCGAGAAGATGACCAAGGC
TCCCAATCTTCCATTGGGCAAGGTGTGCCTTCAGTCGTTGTGGCGTCTGT
TCAACAACCTGGACACCGCCTCTCCCTTACGCTACCATGTGTACTACCAC
CTGGTCCAGGTGGCCAAGCAGTGCGAACAGGTGCTGGAGGTCTTCTCAGG
TGTGGATCAGCTCAAATCCCAGTTTGCCAACTGCCCACCTTCGTCGGAAC
AGATGCAGAAGCTGTACCGCCTGCTGCACGACGTGACCAAGGACACCAAC
CTGGAGCTGTCTTCCAAGGTTATGATTGAGCTGCTGGGCACCTACACGGC
GGACAATGCTTGTGTTGCCCGTGAGGATGCCATGAAGTGCATTGTGACTG
CCTTGGCCGACCCCAATACATTCCTGCTGGATCCTCTGCTGTCGCTGAAG
CCTGTGCGCTTTTTGGAAGGCGACCTCATCCACGACCTGCTGTCCATCTT
CGTGTCCGAGAAGCTGCCAGCGTACGTGCAGTTCTACGAGGATCACAGGG
AGTTTGTCAACTCGCAAGGATTGAACCATGAGCAGAACATGAAGAAGATG
CGTCTGCTGACCTTCATGCAGCTGGCCGAGAGCAGCCCGGAGATGAC
BO06023.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8309-PA | 1164 | CG8309-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1386 | CG8309-RB | 90..971 | 16..897 | 4410 | 100 | Plus |
| Tango7-RA | 1590 | CG8309-RA | 294..1175 | 16..897 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14163481..14164137 | 897..241 | 3285 | 100 | Minus |
| 2R | 25286936 | 2R | 14164191..14164372 | 241..60 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 14164485..14164532 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:25:29 has no hits.
BO06023.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:37 Download gff for
BO06023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:38 Download gff for
BO06023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8309-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:47 Download gff for
BO06023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 294..1175 | 16..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:40:26 Download gff for
BO06023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 294..1175 | 16..897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:40:26 Download gff for
BO06023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14163481..14164136 | 242..897 | 100 | <- | Minus |
| 2R | 14164191..14164370 | 62..241 | 100 | <- | Minus |
| 2R | 14164487..14164532 | 16..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:47 Download gff for
BO06023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10050986..10051641 | 242..897 | 100 | <- | Minus |
| arm_2R | 10051696..10051875 | 62..241 | 100 | <- | Minus |
| arm_2R | 10051992..10052037 | 16..61 | 100 | | Minus |
BO06023.complete Sequence
1195 bp (1195 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630233
> BO06023.complete
GAAGTTATCAGTCGACATGACTTCGCATCCGGTTTTCATAGACCTGTCCC
TGGACGAGCAGGTGCAAGAGCTGCGCAAGTATTTCAAGAAGCTGGGAGCC
GAAATCTCATCGGAGAAGTCCAATAAAGGTGTGGAGGATGATTTGCACAA
GATCATCGGCGTCTGCGACGTTTGCTTTAAGGATGGTGAGCCCTCGCAGA
TTGATGGAATTCTAAACAGCATTGTGTCCATCATGATCACGATACCCCTG
GATCGCGGTGAGAACATTGTCCTGGCCTACTGCGAGAAGATGACCAAGGC
TCCCAATCTTCCATTGGGCAAGGTGTGCCTTCAGTCGTTGTGGCGTCTGT
TCAACAACCTGGACACCGCCTCTCCCTTACGCTACCATGTGTACTACCAC
CTGGTCCAGGTGGCCAAGCAGTGCGAACAGGTGCTGGAGGTCTTCTCAGG
TGTGGATCAGCTCAAATCCCAGTTTGCCAACTGCCCACCTTCGTCGGAAC
AGATGCAGAAGCTGTACCGCCTGCTGCACGACGTGACCAAGGACACCAAC
CTGGAGCTGTCTTCCAAGGTTATGATTGAGCTGCTGGGCACCTACACGGC
GGACAATGCTTGTGTTGCCCGTGAGGATGCCATGAAGTGCATTGTGACTG
CCTTGGCCGACCCCAATACATTCCTGCTGGATCCTCTGCTGTCGCTGAAG
CCTGTGCGCTTTTTGGAAGGCGACCTCATCCACGACCTGCTGTCCATCTT
CGTGTCCGAGAAGCTGCCAGCGTACGTGCAGTTCTACGAGGATCACAGGG
AGTTTGTCAACTCGCAAGGATTGAACCATGAGCAGAACATGAAGAAGATG
CGTCTGCTGACCTTCATGCAGCTGGCCGAGAGCAGCCCGGAGATGACATT
CGAAACGCTTACCAAGGAGCTGCAGATCAACGAAGACGAGGTGGAGCCCT
TCGTCATCGAGGTGCTGAAAACAAAGCTGGTACGCGCACGACTAGATCAG
GCCAATCAAAAGGTACACATCTCATCGACAATGCACCGAACCTTTGGAGC
ACCACAATGGGAGCAGCTTCGCGATTTGCTGCAGGCATGGAAGGAGAACC
TCAGCACAGTGCGCGAGGGTCTAACGAGCGTCTCCTCGGCGCAACTGGAT
CTGGCTCGATCCCAGAAGCTGATACACGCAAGCTTTCTAGACCAT
BO06023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1164 | CG8309-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| Tango7-RA | 1164 | CG8309-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-RB | 1386 | CG8309-RB | 90..1251 | 16..1177 | 5810 | 100 | Plus |
| Tango7-RA | 1590 | CG8309-RA | 294..1455 | 16..1177 | 5810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14163201..14164137 | 1177..241 | 4685 | 100 | Minus |
| 2R | 25286936 | 2R | 14164191..14164372 | 241..60 | 910 | 100 | Minus |
| 2R | 25286936 | 2R | 14164485..14164532 | 63..16 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:33:48 has no hits.
BO06023.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:42 Download gff for
BO06023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 1..1164 | 17..1178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:13 Download gff for
BO06023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 338..1504 | 16..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:57 Download gff for
BO06023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 295..1455 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:42 Download gff for
BO06023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 338..1504 | 16..1183 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:56 Download gff for
BO06023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango7-RA | 295..1455 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:56 Download gff for
BO06023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14163199..14164136 | 242..1179 | 99 | <- | Minus |
| 2R | 14164191..14164370 | 62..241 | 100 | <- | Minus |
| 2R | 14164487..14164531 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:57 Download gff for
BO06023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10050704..10051641 | 242..1179 | 99 | <- | Minus |
| arm_2R | 10051696..10051875 | 62..241 | 100 | <- | Minus |
| arm_2R | 10051992..10052036 | 17..61 | 100 | | Minus |
BO06023.pep Sequence
Translation from 16 to 1195
> BO06023.pep
MTSHPVFIDLSLDEQVQELRKYFKKLGAEISSEKSNKGVEDDLHKIIGVC
DVCFKDGEPSQIDGILNSIVSIMITIPLDRGENIVLAYCEKMTKAPNLPL
GKVCLQSLWRLFNNLDTASPLRYHVYYHLVQVAKQCEQVLEVFSGVDQLK
SQFANCPPSSEQMQKLYRLLHDVTKDTNLELSSKVMIELLGTYTADNACV
AREDAMKCIVTALADPNTFLLDPLLSLKPVRFLEGDLIHDLLSIFVSEKL
PAYVQFYEDHREFVNSQGLNHEQNMKKMRLLTFMQLAESSPEMTFETLTK
ELQINEDEVEPFVIEVLKTKLVRARLDQANQKVHISSTMHRTFGAPQWEQ
LRDLLQAWKENLSTVREGLTSVSSAQLDLARSQKLIHASFLDH
BO06023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango7-PB | 387 | CG8309-PB | 1..387 | 1..387 | 1983 | 100 | Plus |
| Tango7-PA | 387 | CG8309-PA | 1..387 | 1..387 | 1983 | 100 | Plus |
