Clone Sequence Records
BO06024.3prime Sequence
870 bp (814 high quality bases) assembled on 2005-12-02
> BO06024.3prime
ATGGTCTAGAAAGCTTGCGCCGATCATCAGCCCGCAGCCGAGTCTAAAGT
TGTTCTTCACGTGGTTCATGCGTCCGCTCAGGGCTAGTGTGAATGGCAAT
GGAGCCAGACGCTTCTCCAAAACACCAAAGATTTGCCAGTTGGAATCAAT
TCCGCCTCTGAAGACCAGATTCGCTTTGGGCAGATCGATCTGATACGCTA
ACGTGGCCACCGACTCCTGCATCCGCAGACTGGTCTCCACCTCGGCACCG
ATCTGCAGCTGGTCGCTGGCCTTCTGGTAGTAGCACACGTGCAGACCGCT
CTGACCCAGAGTCCCCGACCACACCGAGCTTCCAGCCGTATAGCGGCCCA
CGACGGACATAATAGCTATCTGACGGCCGGGGACGTTCGGACCGAACTGG
TAGGCCAGTTCGGAGCCCAGGGCGAGGGCTGGAGTGACTGACTGGAGATA
TTGGCCAACGACCACGCCGGAGTTGGTGAATATGCTGGGATTGGCCACCG
TCAGCGAGAGGGTGTAATCACTACCGCGATAGTCGGTCGTCAGCTGTGAG
GCCACCACCTTGGACTCCTGGATCTGCGAAGCGAATTTGCAGCGCAGACG
GGCAGAGAACTGATGGATAACATTGGCGTTGAGGTTGCCAGCCGGATCGA
TGTCGCCCAGGAGCACGGGAAAAGCTTCCGTGGGGCTGAACTCCTTGGTG
CCCACATAGGTGGCTCCGAAGCGATATCCACTGGGTACCACATTGCTCAT
GTTGATGGTGTGCGACACCTGGAAGTGGTTGCTCAGGCCCTTGTTCAGCA
TGATCTTGGCGCCCCTCGAGGTGATGGCCTGGATATCTTTGCACTTTTTG
TGAGGCTCCTCAACGGTGCC
BO06024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12157-PA | 1035 | Tom40-RA | 237..1032 | 814..19 | 3980 | 100 | Minus |
CG12157-PB | 1035 | Tom40-RB | 237..1032 | 814..19 | 3980 | 100 | Minus |
CG12157-PA | 1035 | Tom40-RA | 181..232 | 870..819 | 235 | 98 | Minus |
CG12157-PB | 1035 | Tom40-RB | 181..232 | 870..819 | 235 | 98 | Minus |
CG8330-PA | 1023 | tomboy40-RA | 226..292 | 813..747 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 2395 | CG12157-RC | 603..1454 | 870..19 | 4200 | 99.6 | Minus |
Tom40-RB | 1861 | CG12157-RB | 475..1326 | 870..19 | 4200 | 99.6 | Minus |
Tom40-RA | 1676 | CG12157-RA | 290..1141 | 870..19 | 4200 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7738379..7738800 | 576..155 | 2110 | 100 | Minus |
X | 23542271 | X | 7737871..7738135 | 838..574 | 1265 | 98.5 | Minus |
X | 23542271 | X | 7738899..7739037 | 157..19 | 695 | 100 | Minus |
2R | 25286936 | 2R | 6225929..6226628 | 834..135 | 500 | 71.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:19:13 has no hits.
BO06024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:38 Download gff for
BO06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-PB | 181..1035 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:40 Download gff for
BO06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12157-PB | 181..1035 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:34 Download gff for
BO06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 298..1154 | 13..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:54 Download gff for
BO06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 290..1146 | 13..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:54 Download gff for
BO06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7737650..7737683 | 837..870 | 97 | -> | Minus |
X | 7737873..7738135 | 574..836 | 99 | -> | Minus |
X | 7738382..7738799 | 156..573 | 100 | -> | Minus |
X | 7738901..7739042 | 13..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:34 Download gff for
BO06024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7631683..7631716 | 837..870 | 97 | -> | Minus |
arm_X | 7631906..7632168 | 574..836 | 99 | -> | Minus |
arm_X | 7632415..7632832 | 156..573 | 100 | -> | Minus |
arm_X | 7632934..7633075 | 13..155 | 98 | | Minus |
BO06024.5prime Sequence
794 bp (645 high quality bases) assembled on 2005-12-02
> BO06024.5prime
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGG
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC
GGGGACTCTGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGA
BO06024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12157-PA | 1035 | Tom40-RA | 1..778 | 17..794 | 3890 | 100 | Plus |
CG12157-PB | 1035 | Tom40-RB | 1..778 | 17..794 | 3890 | 100 | Plus |
CG8330-PA | 1023 | tomboy40-RA | 205..292 | 233..320 | 190 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 2395 | CG12157-RC | 418..1200 | 12..794 | 3900 | 99.9 | Plus |
Tom40-RB | 1861 | CG12157-RB | 290..1072 | 12..794 | 3900 | 99.9 | Plus |
Tom40-RA | 1676 | CG12157-RA | 105..887 | 12..794 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7738379..7738682 | 491..794 | 1520 | 100 | Plus |
X | 23542271 | X | 7737871..7738135 | 229..493 | 1325 | 100 | Plus |
X | 23542271 | X | 7737465..7737687 | 12..234 | 1085 | 99.1 | Plus |
2R | 25286936 | 2R | 6225929..6226275 | 233..579 | 520 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:02:39 has no hits.
BO06024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:39 Download gff for
BO06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-PB | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:41 Download gff for
BO06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12157-PB | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:03 Download gff for
BO06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 110..894 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:52 Download gff for
BO06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 102..886 | 9..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:52 Download gff for
BO06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7737462..7737683 | 9..230 | 99 | -> | Plus |
X | 7737873..7738135 | 231..493 | 100 | -> | Plus |
X | 7738382..7738681 | 494..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:03 Download gff for
BO06024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7631495..7631716 | 9..230 | 99 | -> | Plus |
arm_X | 7631906..7632168 | 231..493 | 100 | -> | Plus |
arm_X | 7632415..7632714 | 494..793 | 100 | | Plus |
BO06024.complete Sequence
1066 bp (1066 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630234
> BO06024.complete
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGG
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC
GGGGACTCTGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGAAGGCCA
GCGACCAGCTGCAGATCGGTGCCGAGGTGGAGACCAGTCTGCGGATGCAG
GAGTCGGTGGCCACGTTAGCGTATCAGATCGATCTGCCCAAAGCGAATCT
GGTCTTCAGAGGCGGAATTGATTCCAACTGGCAAATCTTTGGTGTTTTGG
AGAAGCGTCTGGCTCCATTGCCATTCACACTAGCCCTGAGCGGACGCATG
AACCACGTGAAGAACAACTTTAGACTCGGCTGCGGGCTGATGATCGGCGC
AAGCTTTCTAGACCAT
BO06024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 1035 | CG12157-PC | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Tom40-RB | 1035 | CG12157-PB | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Tom40-RA | 1035 | CG12157-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-RC | 2395 | CG12157-RC | 418..1454 | 12..1048 | 5170 | 99.9 | Plus |
Tom40-RB | 1861 | CG12157-RB | 290..1326 | 12..1048 | 5170 | 99.9 | Plus |
Tom40-RA | 1676 | CG12157-RA | 105..1141 | 12..1048 | 5170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7738379..7738800 | 491..912 | 2110 | 100 | Plus |
X | 23542271 | X | 7737871..7738135 | 229..493 | 1325 | 100 | Plus |
X | 23542271 | X | 7737465..7737687 | 12..234 | 1085 | 99.1 | Plus |
X | 23542271 | X | 7738899..7739037 | 910..1048 | 695 | 100 | Plus |
2R | 25286936 | 2R | 6225929..6226628 | 233..932 | 560 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:17:31 has no hits.
BO06024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:43 Download gff for
BO06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RB | 1..1035 | 17..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:15 Download gff for
BO06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RB | 291..1335 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:18 Download gff for
BO06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 118..1149 | 17..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:43 Download gff for
BO06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RB | 291..1335 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:14 Download gff for
BO06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom40-RA | 110..1141 | 17..1050 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:14 Download gff for
BO06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7738901..7739037 | 912..1050 | 98 | | Plus |
X | 7737470..7737683 | 17..230 | 100 | -> | Plus |
X | 7737873..7738135 | 231..493 | 100 | -> | Plus |
X | 7738382..7738799 | 494..911 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:18 Download gff for
BO06024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7631503..7631716 | 17..230 | 100 | -> | Plus |
arm_X | 7631906..7632168 | 231..493 | 100 | -> | Plus |
arm_X | 7632415..7632832 | 494..911 | 100 | -> | Plus |
arm_X | 7632934..7633070 | 912..1050 | 98 | | Plus |
BO06024.pep Sequence
Translation from 16 to 1066
> BO06024.pep
MGNVLAASSGAPGSGASNLGLGLQEPAPLPSNSGSLTESSSSAEGLDSLA
AAKDAALENPGTVEELHKKCKDIQAITFEGAKIMLNKGLSNHFQVSHTIN
MSNVVPSGYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSA
RLRCKFASQIQESKVVASQLTTDYRGSDYTLSLTVANPSIFTNSGVVVGQ
YLQSVTPALALGSELAYQFGPNVPGRQIAIMSVVGRYTAGSSVWSGTLGQ
SGLHVCYYQKASDQLQIGAEVETSLRMQESVATLAYQIDLPKANLVFRGG
IDSNWQIFGVLEKRLAPLPFTLALSGRMNHVKNNFRLGCGLMIGASFLDH
BO06024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom40-PC | 344 | CG12157-PC | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PB | 344 | CG12157-PB | 1..344 | 1..344 | 1748 | 100 | Plus |
Tom40-PA | 344 | CG12157-PA | 1..344 | 1..344 | 1748 | 100 | Plus |
tomboy40-PA | 340 | CG8330-PA | 1..340 | 1..344 | 1211 | 68.7 | Plus |
CG4520-PB | 320 | CG4520-PB | 32..316 | 58..348 | 207 | 24.7 | Plus |