Clone BO06024 Report

Search the DGRC for BO06024

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptTom40-RA
Protein status:BO06024.pep: validated full length
Sequenced Size:1066

Clone Sequence Records

BO06024.3prime Sequence

870 bp (814 high quality bases) assembled on 2005-12-02

> BO06024.3prime
ATGGTCTAGAAAGCTTGCGCCGATCATCAGCCCGCAGCCGAGTCTAAAGT
TGTTCTTCACGTGGTTCATGCGTCCGCTCAGGGCTAGTGTGAATGGCAAT
GGAGCCAGACGCTTCTCCAAAACACCAAAGATTTGCCAGTTGGAATCAAT
TCCGCCTCTGAAGACCAGATTCGCTTTGGGCAGATCGATCTGATACGCTA
ACGTGGCCACCGACTCCTGCATCCGCAGACTGGTCTCCACCTCGGCACCG
ATCTGCAGCTGGTCGCTGGCCTTCTGGTAGTAGCACACGTGCAGACCGCT
CTGACCCAGAGTCCCCGACCACACCGAGCTTCCAGCCGTATAGCGGCCCA
CGACGGACATAATAGCTATCTGACGGCCGGGGACGTTCGGACCGAACTGG
TAGGCCAGTTCGGAGCCCAGGGCGAGGGCTGGAGTGACTGACTGGAGATA
TTGGCCAACGACCACGCCGGAGTTGGTGAATATGCTGGGATTGGCCACCG
TCAGCGAGAGGGTGTAATCACTACCGCGATAGTCGGTCGTCAGCTGTGAG
GCCACCACCTTGGACTCCTGGATCTGCGAAGCGAATTTGCAGCGCAGACG
GGCAGAGAACTGATGGATAACATTGGCGTTGAGGTTGCCAGCCGGATCGA
TGTCGCCCAGGAGCACGGGAAAAGCTTCCGTGGGGCTGAACTCCTTGGTG
CCCACATAGGTGGCTCCGAAGCGATATCCACTGGGTACCACATTGCTCAT
GTTGATGGTGTGCGACACCTGGAAGTGGTTGCTCAGGCCCTTGTTCAGCA
TGATCTTGGCGCCCCTCGAGGTGATGGCCTGGATATCTTTGCACTTTTTG
TGAGGCTCCTCAACGGTGCC

BO06024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12157-PA 1035 Tom40-RA 237..1032 814..19 3980 100 Minus
CG12157-PB 1035 Tom40-RB 237..1032 814..19 3980 100 Minus
CG12157-PA 1035 Tom40-RA 181..232 870..819 235 98 Minus
CG12157-PB 1035 Tom40-RB 181..232 870..819 235 98 Minus
CG8330-PA 1023 tomboy40-RA 226..292 813..747 135 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 2395 CG12157-RC 603..1454 870..19 4200 99.6 Minus
Tom40-RB 1861 CG12157-RB 475..1326 870..19 4200 99.6 Minus
Tom40-RA 1676 CG12157-RA 290..1141 870..19 4200 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7738379..7738800 576..155 2110 100 Minus
X 23542271 X 7737871..7738135 838..574 1265 98.5 Minus
X 23542271 X 7738899..7739037 157..19 695 100 Minus
2R 25286936 2R 6225929..6226628 834..135 500 71.4 Minus
Blast to na_te.dros performed on 2015-02-11 22:19:13 has no hits.

BO06024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:38 Download gff for BO06024.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-PB 181..1035 15..870 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:40 Download gff for BO06024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12157-PB 181..1035 15..870 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:34 Download gff for BO06024.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 298..1154 13..870 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:01:54 Download gff for BO06024.3prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 290..1146 13..870 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:01:54 Download gff for BO06024.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7737650..7737683 837..870 97 -> Minus
X 7737873..7738135 574..836 99 -> Minus
X 7738382..7738799 156..573 100 -> Minus
X 7738901..7739042 13..155 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:34 Download gff for BO06024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7631683..7631716 837..870 97 -> Minus
arm_X 7631906..7632168 574..836 99 -> Minus
arm_X 7632415..7632832 156..573 100 -> Minus
arm_X 7632934..7633075 13..155 98   Minus

BO06024.5prime Sequence

794 bp (645 high quality bases) assembled on 2005-12-02

> BO06024.5prime
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGG
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC
GGGGACTCTGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGA

BO06024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12157-PA 1035 Tom40-RA 1..778 17..794 3890 100 Plus
CG12157-PB 1035 Tom40-RB 1..778 17..794 3890 100 Plus
CG8330-PA 1023 tomboy40-RA 205..292 233..320 190 88.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 2395 CG12157-RC 418..1200 12..794 3900 99.9 Plus
Tom40-RB 1861 CG12157-RB 290..1072 12..794 3900 99.9 Plus
Tom40-RA 1676 CG12157-RA 105..887 12..794 3900 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7738379..7738682 491..794 1520 100 Plus
X 23542271 X 7737871..7738135 229..493 1325 100 Plus
X 23542271 X 7737465..7737687 12..234 1085 99.1 Plus
2R 25286936 2R 6225929..6226275 233..579 520 76.7 Plus
Blast to na_te.dros performed on 2015-02-09 19:02:39 has no hits.

BO06024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:39 Download gff for BO06024.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-PB 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:41 Download gff for BO06024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12157-PB 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:03 Download gff for BO06024.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 110..894 9..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:52 Download gff for BO06024.5prime
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 102..886 9..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:52 Download gff for BO06024.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7737462..7737683 9..230 99 -> Plus
X 7737873..7738135 231..493 100 -> Plus
X 7738382..7738681 494..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:03 Download gff for BO06024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7631495..7631716 9..230 99 -> Plus
arm_X 7631906..7632168 231..493 100 -> Plus
arm_X 7632415..7632714 494..793 100   Plus

BO06024.complete Sequence

1066 bp (1066 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630234

> BO06024.complete
GAAGTTATCAGTCGACATGGGCAACGTGCTAGCGGCTTCCTCCGGCGCCC
CAGGCAGTGGCGCCTCAAATCTGGGCCTCGGCCTACAGGAACCGGCTCCC
CTGCCCTCTAATTCCGGCTCACTGACCGAATCCTCTTCGTCCGCCGAAGG
CTTGGACTCACTTGCCGCCGCCAAGGACGCAGCGCTGGAGAATCCCGGCA
CCGTTGAGGAGCTTCACAAAAAGTGCAAAGATATCCAGGCCATCACCTTC
GAGGGCGCCAAGATCATGCTGAACAAGGGCCTGAGCAACCACTTCCAGGT
GTCGCACACCATCAACATGAGCAATGTGGTACCCAGTGGATATCGCTTCG
GAGCCACCTATGTGGGCACCAAGGAGTTCAGCCCCACGGAAGCTTTTCCC
GTGCTCCTGGGCGACATCGATCCGGCTGGCAACCTCAACGCCAATGTTAT
CCATCAGTTCTCTGCCCGTCTGCGCTGCAAATTCGCTTCGCAGATCCAGG
AGTCCAAGGTGGTGGCCTCACAGCTGACGACCGACTATCGCGGTAGTGAT
TACACCCTCTCGCTGACGGTGGCCAATCCCAGCATATTCACCAACTCCGG
CGTGGTCGTTGGCCAATATCTCCAGTCAGTCACTCCAGCCCTCGCCCTGG
GCTCCGAACTGGCCTACCAGTTCGGTCCGAACGTCCCCGGCCGTCAGATA
GCTATTATGTCCGTCGTGGGCCGCTATACGGCTGGAAGCTCGGTGTGGTC
GGGGACTCTGGGTCAGAGCGGTCTGCACGTGTGCTACTACCAGAAGGCCA
GCGACCAGCTGCAGATCGGTGCCGAGGTGGAGACCAGTCTGCGGATGCAG
GAGTCGGTGGCCACGTTAGCGTATCAGATCGATCTGCCCAAAGCGAATCT
GGTCTTCAGAGGCGGAATTGATTCCAACTGGCAAATCTTTGGTGTTTTGG
AGAAGCGTCTGGCTCCATTGCCATTCACACTAGCCCTGAGCGGACGCATG
AACCACGTGAAGAACAACTTTAGACTCGGCTGCGGGCTGATGATCGGCGC
AAGCTTTCTAGACCAT

BO06024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 1035 CG12157-PC 1..1032 17..1048 5160 100 Plus
Tom40-RB 1035 CG12157-PB 1..1032 17..1048 5160 100 Plus
Tom40-RA 1035 CG12157-PA 1..1032 17..1048 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-RC 2395 CG12157-RC 418..1454 12..1048 5170 99.9 Plus
Tom40-RB 1861 CG12157-RB 290..1326 12..1048 5170 99.9 Plus
Tom40-RA 1676 CG12157-RA 105..1141 12..1048 5170 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7738379..7738800 491..912 2110 100 Plus
X 23542271 X 7737871..7738135 229..493 1325 100 Plus
X 23542271 X 7737465..7737687 12..234 1085 99.1 Plus
X 23542271 X 7738899..7739037 910..1048 695 100 Plus
2R 25286936 2R 6225929..6226628 233..932 560 72 Plus
Blast to na_te.dros performed on 2014-11-27 16:17:31 has no hits.

BO06024.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:43 Download gff for BO06024.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RB 1..1035 17..1052 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:15 Download gff for BO06024.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RB 291..1335 9..1054 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:18 Download gff for BO06024.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 118..1149 17..1050 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:43 Download gff for BO06024.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RB 291..1335 9..1054 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:14 Download gff for BO06024.complete
Subject Subject Range Query Range Percent Splice Strand
Tom40-RA 110..1141 17..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:14 Download gff for BO06024.complete
Subject Subject Range Query Range Percent Splice Strand
X 7738901..7739037 912..1050 98   Plus
X 7737470..7737683 17..230 100 -> Plus
X 7737873..7738135 231..493 100 -> Plus
X 7738382..7738799 494..911 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:18 Download gff for BO06024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7631503..7631716 17..230 100 -> Plus
arm_X 7631906..7632168 231..493 100 -> Plus
arm_X 7632415..7632832 494..911 100 -> Plus
arm_X 7632934..7633070 912..1050 98   Plus

BO06024.pep Sequence

Translation from 16 to 1066

> BO06024.pep
MGNVLAASSGAPGSGASNLGLGLQEPAPLPSNSGSLTESSSSAEGLDSLA
AAKDAALENPGTVEELHKKCKDIQAITFEGAKIMLNKGLSNHFQVSHTIN
MSNVVPSGYRFGATYVGTKEFSPTEAFPVLLGDIDPAGNLNANVIHQFSA
RLRCKFASQIQESKVVASQLTTDYRGSDYTLSLTVANPSIFTNSGVVVGQ
YLQSVTPALALGSELAYQFGPNVPGRQIAIMSVVGRYTAGSSVWSGTLGQ
SGLHVCYYQKASDQLQIGAEVETSLRMQESVATLAYQIDLPKANLVFRGG
IDSNWQIFGVLEKRLAPLPFTLALSGRMNHVKNNFRLGCGLMIGASFLDH

BO06024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tom40-PC 344 CG12157-PC 1..344 1..344 1748 100 Plus
Tom40-PB 344 CG12157-PB 1..344 1..344 1748 100 Plus
Tom40-PA 344 CG12157-PA 1..344 1..344 1748 100 Plus
tomboy40-PA 340 CG8330-PA 1..340 1..344 1211 68.7 Plus
CG4520-PB 320 CG4520-PB 32..316 58..348 207 24.7 Plus