Clone Sequence Records
BO06026.3prime Sequence
952 bp (799 high quality bases) assembled on 2005-12-02
> BO06026.3prime
ATGGTCTAGAAAGCTTGCACGAGAGCTGTCACTGCTATTGCTGCGGCGTC
GACGACGAATGGGGGAGCGGGAGCGACGCCGTGGTGAACGCCGGTTCCTC
ATGGGTGACTGACGACGTCCGCCGCCGCCGCCACCACCTCCTCCACGATT
GTTGAACCTATTGAACTGGGGTGGGGATCGCCAGCGGTTGTTTTGCGGAC
GGCGCATCGGTGGCGAAGGACGACGCATGGGCGGCCTCTGTTTTACTAAG
ACAACCGGGGATACCGTAATCTCCTGGCCATCTATCTGCCCGCCATCCAT
ATGCTTCATGGCCGACTCACAATCCTCGGGTGTGGCATATTCCACAAACG
CCACGCCGCGTCCGAAGTTAGGATGAAAACGATCTACGGGAAACTCCACA
TTCTTCACATCCCCAAAGCTGCTAAATATCTCGAACACATGGTCCTTGGT
AACGTTGCGGGTAAGCCGACCGACATGAATGCGCACCTGTTTGGGCGAAG
GCGAGCGAGTCCGCGAACGGGAGCGCTCCCTTCGCTTCGGTGGCGGCGTC
CTCTCAACGGAGCCGCGACCACGACGGCGTGGCGATCGTGAACGACTGGC
TGAGCGAGAACGCTCCCGCTTAACATTATTGCTATCGGCGGCTGCCCTAT
CGTTGGATCCAGCACGGCGGGCACGATCCCTCGACCGACTACGACGATCG
CGATCTCGCTCCGGCTCTTTTCGCGCCTTGCTGCCCGGTCTTGGAGATTT
GGAGACACGCCTGGGGGAACGGGTGCGAGAGCGGGAACGTGATCGGGCGC
TGGGCTTATCCTTGTCTTTGTCTTTGCAGCAGCGCCGCCGCCACGTCTTC
GGTTCTTCTCGCTGCGATCCCGATCGCTGGACGACGATGATGAGGAGCTC
GAGGAGTCGCTGGAGCTGCTTGAGCTGGAACGCGATGACCCGGAACTGCT
CC
BO06026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16788-PA | 1125 | RnpS1-RA | 314..1122 | 827..19 | 4045 | 100 | Minus |
CG16788-PA | 1125 | RnpS1-RA | 188..313 | 952..827 | 580 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnpS1-RA | 1370 | CG16788-RA | 337..1271 | 952..19 | 4620 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9552714..9553648 | 952..19 | 4595 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:50:36 has no hits.
BO06026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:43 Download gff for
BO06026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-PA | 188..1125 | 18..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:45 Download gff for
BO06026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16788-PA | 188..1125 | 18..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:44 Download gff for
BO06026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 337..1271 | 19..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:24 Download gff for
BO06026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 337..1271 | 19..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:24 Download gff for
BO06026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9552714..9553648 | 19..952 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:44 Download gff for
BO06026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5378436..5379370 | 19..952 | 99 | | Minus |
BO06026.5prime Sequence
897 bp (804 high quality bases) assembled on 2005-12-02
> BO06026.5prime
GAAGTTATCAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTG
AGAAGGAAAAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCAAG
GCGACCAGCGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATC
GGCGTCCTCCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCAGCTCTT
CGCGGAGCAGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGAC
TCCTCGAGCTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAA
GAACCGAAGACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATA
AGCCCAGCGCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGT
GTCTCCAAATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCG
AGATCGCGATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGAT
CCAACGATAGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAGCGTTCT
CGCTCAGCCAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGGCTCCGT
TGAGAGGACGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGCGGACTC
GCTCGCCTTCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTTACCCGC
AACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGGGGATGT
GAAGAATGTGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCGGACGCG
GCGTGGCGTTTGTGGAATATGCCACACCCCGAGATTGTGAGTCGGCCATG
AAGCATATGGATGGCGGGCAGATAGATGGCCAGGAGATTACGGTATC
BO06026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16788-PA | 1125 | RnpS1-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
CG16788-PA | 1125 | RnpS1-RA | 817..881 | 833..897 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnpS1-RA | 1370 | CG16788-RA | 150..1030 | 17..897 | 4360 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9552688..9553407 | 178..897 | 3555 | 99.6 | Plus |
3R | 32079331 | 3R | 9552257..9552422 | 15..180 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:28:13 has no hits.
BO06026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:44 Download gff for
BO06026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:46 Download gff for
BO06026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16788-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:40 Download gff for
BO06026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 140..1030 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:53 Download gff for
BO06026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 140..1030 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:53 Download gff for
BO06026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9552257..9552422 | 15..180 | 99 | -> | Plus |
3R | 9552691..9553407 | 181..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:40 Download gff for
BO06026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5377979..5378144 | 15..180 | 99 | -> | Plus |
arm_3R | 5378413..5379129 | 181..897 | 99 | | Plus |
BO06026.complete Sequence
1156 bp (1156 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630236
> BO06026.complete
GAAGTTATCAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTG
AGAAGGAAAAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCAAG
GCGACCAGCGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATC
GGCGTCCTCCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCAGCTCTT
CGCGGAGCAGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGAC
TCCTCGAGCTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAA
GAACCGAAGACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATA
AGCCCAGCGCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGT
GTCTCCAAATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCG
AGATCGCGATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGAT
CCAACGATAGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAGCGTTCT
CGCTCAGCCAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGGCTCCGT
TGAGAGGACGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGCGGACTC
GCTCGCCTTCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTTACCCGC
AACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGGGGATGT
GAAGAATGTGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCGGACGCG
GCGTGGCGTTTGTGGAATATGCCACACCCGAGGATTGTGAGTCGGCCATG
AAGCATATGGATGGCGGGCAGATAGATGGCCAGGAGATTACGGTATCCCC
GGTTGTCTTAGTAAAACAGAGGCCGCCCATGCGTCGTCCTTCGCCACCGA
TGCGCCGTCCGCAAAACAACCGCTGGCGATCCCCACCCCAGTTCAATAGG
TTCAACAATCGTGGAGGAGGTGGTGGCGGCGGCGGCGGACGTCGTCAGTC
ACCCATGAGGAACCGGCGTTCACCACGGCGTCGCTCCCGCTCCCCCATTC
GTCGTCGACGCCGCAGCAATAGCAGTGACAGCTCTCGTGCAAGCTTTCTA
GACCAT
BO06026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnpS1-RA | 1125 | CG16788-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnpS1-RA | 1370 | CG16788-RA | 150..1271 | 17..1138 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9552688..9553648 | 178..1138 | 4805 | 100 | Plus |
3R | 32079331 | 3R | 9552257..9552422 | 15..180 | 815 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:31 has no hits.
BO06026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:45 Download gff for
BO06026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 1..1125 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:19 Download gff for
BO06026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 131..1262 | 9..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:11 Download gff for
BO06026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 150..1271 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:46 Download gff for
BO06026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 131..1262 | 9..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:24 Download gff for
BO06026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnpS1-RA | 150..1271 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:24 Download gff for
BO06026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9552259..9552422 | 17..180 | 99 | -> | Plus |
3R | 9552691..9553648 | 181..1140 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:11 Download gff for
BO06026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5377981..5378144 | 17..180 | 99 | -> | Plus |
arm_3R | 5378413..5379370 | 181..1140 | 99 | | Plus |
BO06026.pep Sequence
Translation from 16 to 1156
> BO06026.pep
MARAQSLAGEGEKEKDNKEKVAKEKDGKATSGSSRRDRERKRRGSASSSS
DSRSSTSDSSSSRSSSGSSRSSSSSSSDSSSSSSSSSSDSDRSEKNRRRG
GGAAGKDKDKDKPSARSRSRSRTRSPRRVSKSPRPGSKARKEPERDRDRR
SRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSVERTPP
PKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEF
PVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVK
QRPPMRRPSPPMRRPQNNRWRSPPQFNRFNNRGGGGGGGGGRRQSPMRNR
RSPRRRSRSPIRRRRRSNSSDSSRASFLDH
BO06026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnpS1-PA | 374 | CG16788-PA | 1..374 | 1..374 | 1901 | 100 | Plus |
CG34334-PA | 708 | CG34334-PA | 342..679 | 1..374 | 365 | 30.6 | Plus |
Caper-PB | 594 | CG11266-PB | 30..318 | 23..302 | 265 | 30 | Plus |
Caper-PA | 594 | CG11266-PA | 30..318 | 23..302 | 265 | 30 | Plus |
SRm160-PA | 954 | CG11274-PA | 120..473 | 19..374 | 244 | 28 | Plus |