Clone BO06026 Report

Search the DGRC for BO06026

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptRnpS1-RA
Protein status:BO06026.pep: validated full length
Sequenced Size:1156

Clone Sequence Records

BO06026.3prime Sequence

952 bp (799 high quality bases) assembled on 2005-12-02

> BO06026.3prime
ATGGTCTAGAAAGCTTGCACGAGAGCTGTCACTGCTATTGCTGCGGCGTC
GACGACGAATGGGGGAGCGGGAGCGACGCCGTGGTGAACGCCGGTTCCTC
ATGGGTGACTGACGACGTCCGCCGCCGCCGCCACCACCTCCTCCACGATT
GTTGAACCTATTGAACTGGGGTGGGGATCGCCAGCGGTTGTTTTGCGGAC
GGCGCATCGGTGGCGAAGGACGACGCATGGGCGGCCTCTGTTTTACTAAG
ACAACCGGGGATACCGTAATCTCCTGGCCATCTATCTGCCCGCCATCCAT
ATGCTTCATGGCCGACTCACAATCCTCGGGTGTGGCATATTCCACAAACG
CCACGCCGCGTCCGAAGTTAGGATGAAAACGATCTACGGGAAACTCCACA
TTCTTCACATCCCCAAAGCTGCTAAATATCTCGAACACATGGTCCTTGGT
AACGTTGCGGGTAAGCCGACCGACATGAATGCGCACCTGTTTGGGCGAAG
GCGAGCGAGTCCGCGAACGGGAGCGCTCCCTTCGCTTCGGTGGCGGCGTC
CTCTCAACGGAGCCGCGACCACGACGGCGTGGCGATCGTGAACGACTGGC
TGAGCGAGAACGCTCCCGCTTAACATTATTGCTATCGGCGGCTGCCCTAT
CGTTGGATCCAGCACGGCGGGCACGATCCCTCGACCGACTACGACGATCG
CGATCTCGCTCCGGCTCTTTTCGCGCCTTGCTGCCCGGTCTTGGAGATTT
GGAGACACGCCTGGGGGAACGGGTGCGAGAGCGGGAACGTGATCGGGCGC
TGGGCTTATCCTTGTCTTTGTCTTTGCAGCAGCGCCGCCGCCACGTCTTC
GGTTCTTCTCGCTGCGATCCCGATCGCTGGACGACGATGATGAGGAGCTC
GAGGAGTCGCTGGAGCTGCTTGAGCTGGAACGCGATGACCCGGAACTGCT
CC

BO06026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG16788-PA 1125 RnpS1-RA 314..1122 827..19 4045 100 Minus
CG16788-PA 1125 RnpS1-RA 188..313 952..827 580 98.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:40
Subject Length Description Subject Range Query Range Score Percent Strand
RnpS1-RA 1370 CG16788-RA 337..1271 952..19 4620 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9552714..9553648 952..19 4595 99.7 Minus
Blast to na_te.dros performed on 2015-02-13 00:50:36 has no hits.

BO06026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:43 Download gff for BO06026.3prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-PA 188..1125 18..952 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:45 Download gff for BO06026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16788-PA 188..1125 18..952 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:44 Download gff for BO06026.3prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 337..1271 19..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:24 Download gff for BO06026.3prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 337..1271 19..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:24 Download gff for BO06026.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9552714..9553648 19..952 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:44 Download gff for BO06026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5378436..5379370 19..952 99   Minus

BO06026.5prime Sequence

897 bp (804 high quality bases) assembled on 2005-12-02

> BO06026.5prime
GAAGTTATCAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTG
AGAAGGAAAAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCAAG
GCGACCAGCGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATC
GGCGTCCTCCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCAGCTCTT
CGCGGAGCAGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGAC
TCCTCGAGCTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAA
GAACCGAAGACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATA
AGCCCAGCGCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGT
GTCTCCAAATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCG
AGATCGCGATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGAT
CCAACGATAGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAGCGTTCT
CGCTCAGCCAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGGCTCCGT
TGAGAGGACGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGCGGACTC
GCTCGCCTTCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTTACCCGC
AACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGGGGATGT
GAAGAATGTGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCGGACGCG
GCGTGGCGTTTGTGGAATATGCCACACCCCGAGATTGTGAGTCGGCCATG
AAGCATATGGATGGCGGGCAGATAGATGGCCAGGAGATTACGGTATC

BO06026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16788-PA 1125 RnpS1-RA 1..813 17..829 4065 100 Plus
CG16788-PA 1125 RnpS1-RA 817..881 833..897 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
RnpS1-RA 1370 CG16788-RA 150..1030 17..897 4360 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9552688..9553407 178..897 3555 99.6 Plus
3R 32079331 3R 9552257..9552422 15..180 815 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 10:28:13 has no hits.

BO06026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:44 Download gff for BO06026.5prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:46 Download gff for BO06026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16788-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:40 Download gff for BO06026.5prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 140..1030 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:53 Download gff for BO06026.5prime
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 140..1030 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:53 Download gff for BO06026.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9552257..9552422 15..180 99 -> Plus
3R 9552691..9553407 181..897 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:40 Download gff for BO06026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5377979..5378144 15..180 99 -> Plus
arm_3R 5378413..5379129 181..897 99   Plus

BO06026.complete Sequence

1156 bp (1156 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630236

> BO06026.complete
GAAGTTATCAGTCGACATGGCGCGTGCCCAGAGTCTCGCCGGCGAGGGTG
AGAAGGAAAAGGACAACAAGGAGAAGGTCGCCAAAGAGAAGGACGGCAAG
GCGACCAGCGGCTCCTCGCGCAGGGACCGCGAACGCAAACGCCGCGGATC
GGCGTCCTCCAGCAGCGACTCCAGAAGCAGCACATCGGACAGCAGCTCTT
CGCGGAGCAGTTCCGGGTCATCGCGTTCCAGCTCAAGCAGCTCCAGCGAC
TCCTCGAGCTCCTCATCATCGTCGTCCAGCGATTCGGATCGCAGCGAGAA
GAACCGAAGACGTGGCGGCGGCGCTGCTGGCAAAGACAAAGACAAGGATA
AGCCCAGCGCCCGATCACGTTCCCGCTCTCGCACCCGTTCCCCCAGGCGT
GTCTCCAAATCTCCAAGACCGGGCAGCAAGGCGCGAAAAGAGCCGGAGCG
AGATCGCGATCGTCGTAGTCGGTCGAGGGATCGTGCCCGCCGTGCTGGAT
CCAACGATAGGGCAGCCGCCGATAGCAATAATGTTAAGCGGGAGCGTTCT
CGCTCAGCCAGTCGTTCACGATCGCCACGCCGTCGTGGTCGCGGCTCCGT
TGAGAGGACGCCGCCACCGAAGCGAAGGGAGCGCTCCCGTTCGCGGACTC
GCTCGCCTTCGCCCAAACAGGTGCGCATTCATGTCGGTCGGCTTACCCGC
AACGTTACCAAGGACCATGTGTTCGAGATATTTAGCAGCTTTGGGGATGT
GAAGAATGTGGAGTTTCCCGTAGATCGTTTTCATCCTAACTTCGGACGCG
GCGTGGCGTTTGTGGAATATGCCACACCCGAGGATTGTGAGTCGGCCATG
AAGCATATGGATGGCGGGCAGATAGATGGCCAGGAGATTACGGTATCCCC
GGTTGTCTTAGTAAAACAGAGGCCGCCCATGCGTCGTCCTTCGCCACCGA
TGCGCCGTCCGCAAAACAACCGCTGGCGATCCCCACCCCAGTTCAATAGG
TTCAACAATCGTGGAGGAGGTGGTGGCGGCGGCGGCGGACGTCGTCAGTC
ACCCATGAGGAACCGGCGTTCACCACGGCGTCGCTCCCGCTCCCCCATTC
GTCGTCGACGCCGCAGCAATAGCAGTGACAGCTCTCGTGCAAGCTTTCTA
GACCAT

BO06026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
RnpS1-RA 1125 CG16788-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
RnpS1-RA 1370 CG16788-RA 150..1271 17..1138 5610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9552688..9553648 178..1138 4805 100 Plus
3R 32079331 3R 9552257..9552422 15..180 815 99.4 Plus
Blast to na_te.dros performed on 2014-11-27 13:56:31 has no hits.

BO06026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:45 Download gff for BO06026.complete
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 1..1125 17..1139 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:19 Download gff for BO06026.complete
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 131..1262 9..1138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:11 Download gff for BO06026.complete
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 150..1271 17..1140 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:46 Download gff for BO06026.complete
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 131..1262 9..1138 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:24 Download gff for BO06026.complete
Subject Subject Range Query Range Percent Splice Strand
RnpS1-RA 150..1271 17..1140 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:24 Download gff for BO06026.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9552259..9552422 17..180 99 -> Plus
3R 9552691..9553648 181..1140 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:11 Download gff for BO06026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5377981..5378144 17..180 99 -> Plus
arm_3R 5378413..5379370 181..1140 99   Plus

BO06026.pep Sequence

Translation from 16 to 1156

> BO06026.pep
MARAQSLAGEGEKEKDNKEKVAKEKDGKATSGSSRRDRERKRRGSASSSS
DSRSSTSDSSSSRSSSGSSRSSSSSSSDSSSSSSSSSSDSDRSEKNRRRG
GGAAGKDKDKDKPSARSRSRSRTRSPRRVSKSPRPGSKARKEPERDRDRR
SRSRDRARRAGSNDRAAADSNNVKRERSRSASRSRSPRRRGRGSVERTPP
PKRRERSRSRTRSPSPKQVRIHVGRLTRNVTKDHVFEIFSSFGDVKNVEF
PVDRFHPNFGRGVAFVEYATPEDCESAMKHMDGGQIDGQEITVSPVVLVK
QRPPMRRPSPPMRRPQNNRWRSPPQFNRFNNRGGGGGGGGGRRQSPMRNR
RSPRRRSRSPIRRRRRSNSSDSSRASFLDH

BO06026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
RnpS1-PA 374 CG16788-PA 1..374 1..374 1901 100 Plus
CG34334-PA 708 CG34334-PA 342..679 1..374 365 30.6 Plus
Caper-PB 594 CG11266-PB 30..318 23..302 265 30 Plus
Caper-PA 594 CG11266-PA 30..318 23..302 265 30 Plus
SRm160-PA 954 CG11274-PA 120..473 19..374 244 28 Plus