Clone BO06029 Report

Search the DGRC for BO06029

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG1789-RA
Protein status:BO06029.pep: validated full length
Sequenced Size:745

Clone Sequence Records

BO06029.3prime Sequence

743 bp (742 high quality bases) assembled on 2005-12-02

> BO06029.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGCGTTCGTAGCGGAATTTGTAGACGG
GCGCACTGTCCTTGGTTCCCGGCTTTATTTTCCTCGGCTTCAGTAGGCGT
GGCTGCTTGAGGGTGTTCTTCAGCTGAATCTTCTGCTGGACGATGCCGAG
TTCCCTTTCACGCTGCTCGCGTTTCTTCAGCTCGTTGATGCGCTGCTGTT
TGATGGGGTTTGGTTCAGTTGTTTTCGATTTCTTCTTCTTTTCCTCCTCT
TCCTCCTCGTCATCATGCTTTAAAAGCCATTCGCCCATGTCCAACTCCAT
GTATCCGTCTTCGTCAAATTTGATACGTTTGTTGGCTGCTCCCTTAATGG
CATCCACGTCCACCAGCGAGGCCTTCAAGCGTTCGATCTTCTTGCGCTCC
ATGGTGCGCTTCATCACCACGTACTTGAGGTCCTGCGTCTGCATGAGGGC
CAATTGCTCGGGCGTGTGCTCGTCCTTCGTGTCCTTCTCGTGGTGCTCAT
CGTTGGACAGCTTGGAGTTGATCATATGGTGGTAGAACTCATCGGGATTC
TTGTTCTGCGCCCGGCGGTACAATAGCTTCAAGGTCTTTTGCTTTTTCTG
TGCGTCGATGGCTCGCTTCTTGTAGTCCTTTTTCTTCTCCAGGAATCCCA
GATGCTGGCGCGACTCCGGCTGGTGGCGCTCCCTGTGCACCTTCTGGTTG
CTTTTCGACGCATTCTTCCACGATGACATGTCGACTGATAACT

BO06029.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 714 CG1789-RA 1..711 729..19 3555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..797 729..19 3555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 729..226 2520 100 Minus
X 23542271 X 8721233..8721440 226..19 1040 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:51:08 has no hits.

BO06029.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:48 Download gff for BO06029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 18..729 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:53 Download gff for BO06029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 18..729 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:48 Download gff for BO06029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 19..729 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:30 Download gff for BO06029.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 19..729 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:30 Download gff for BO06029.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8720606..8721109 226..729 100 -> Minus
X 8721234..8721440 19..225 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:48 Download gff for BO06029.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614639..8615142 226..729 100 -> Minus
arm_X 8615267..8615473 19..225 100   Minus

BO06029.5prime Sequence

743 bp (721 high quality bases) assembled on 2005-12-02

> BO06029.5prime
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAAGCAAGCTTTCTAGACC

BO06029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 714 CG1789-RA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..797 17..727 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 17..520 2520 100 Plus
X 23542271 X 8721233..8721440 520..727 1040 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:11:23 has no hits.

BO06029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:49 Download gff for BO06029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 17..728 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:55 Download gff for BO06029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-PA 1..714 17..728 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:04 Download gff for BO06029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 17..727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:37 Download gff for BO06029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 17..727 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:37 Download gff for BO06029.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8720606..8721109 17..520 100 -> Plus
X 8721234..8721440 521..727 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:04 Download gff for BO06029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8614639..8615142 17..520 100 -> Plus
arm_X 8615267..8615473 521..727 100   Plus

BO06029.complete Sequence

745 bp (745 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630237

> BO06029.complete
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAAGCAAGCTTTCTAGACCAT

BO06029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 714 CG1789-PA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-RA 860 CG1789-RA 87..797 17..727 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8720606..8721109 17..520 2520 100 Plus
X 23542271 X 8721233..8721440 520..727 1040 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:52:59 has no hits.

BO06029.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:46 Download gff for BO06029.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 1..714 17..728 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:21 Download gff for BO06029.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 50..760 17..727 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:39 Download gff for BO06029.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 17..729 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:47 Download gff for BO06029.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 50..760 17..727 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:04 Download gff for BO06029.complete
Subject Subject Range Query Range Percent Splice Strand
CG1789-RA 87..797 17..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:04 Download gff for BO06029.complete
Subject Subject Range Query Range Percent Splice Strand
X 8720606..8721109 17..520 100 -> Plus
X 8721234..8721440 521..729 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:39 Download gff for BO06029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8615267..8615473 521..729 99   Plus
arm_X 8614639..8615142 17..520 100 -> Plus

BO06029.pep Sequence

Translation from 16 to 745

> BO06029.pep
MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTL
KLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQD
LKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDEDGYMELDMGE
WLLKHDDEEEEEEKKKKSKTTEPNPIKQQRINELKKREQRERELGIVQQK
IQLKNTLKQPRLLKPRKIKPGTKDSAPVYKFRYERKKASFLDH

BO06029.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1789-PA 237 CG1789-PA 1..237 1..237 1234 100 Plus