Clone Sequence Records
BO06029.3prime Sequence
743 bp (742 high quality bases) assembled on 2005-12-02
> BO06029.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGCGTTCGTAGCGGAATTTGTAGACGG
GCGCACTGTCCTTGGTTCCCGGCTTTATTTTCCTCGGCTTCAGTAGGCGT
GGCTGCTTGAGGGTGTTCTTCAGCTGAATCTTCTGCTGGACGATGCCGAG
TTCCCTTTCACGCTGCTCGCGTTTCTTCAGCTCGTTGATGCGCTGCTGTT
TGATGGGGTTTGGTTCAGTTGTTTTCGATTTCTTCTTCTTTTCCTCCTCT
TCCTCCTCGTCATCATGCTTTAAAAGCCATTCGCCCATGTCCAACTCCAT
GTATCCGTCTTCGTCAAATTTGATACGTTTGTTGGCTGCTCCCTTAATGG
CATCCACGTCCACCAGCGAGGCCTTCAAGCGTTCGATCTTCTTGCGCTCC
ATGGTGCGCTTCATCACCACGTACTTGAGGTCCTGCGTCTGCATGAGGGC
CAATTGCTCGGGCGTGTGCTCGTCCTTCGTGTCCTTCTCGTGGTGCTCAT
CGTTGGACAGCTTGGAGTTGATCATATGGTGGTAGAACTCATCGGGATTC
TTGTTCTGCGCCCGGCGGTACAATAGCTTCAAGGTCTTTTGCTTTTTCTG
TGCGTCGATGGCTCGCTTCTTGTAGTCCTTTTTCTTCTCCAGGAATCCCA
GATGCTGGCGCGACTCCGGCTGGTGGCGCTCCCTGTGCACCTTCTGGTTG
CTTTTCGACGCATTCTTCCACGATGACATGTCGACTGATAACT
BO06029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-PA | 714 | CG1789-RA | 1..711 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 860 | CG1789-RA | 87..797 | 729..19 | 3555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8720606..8721109 | 729..226 | 2520 | 100 | Minus |
X | 23542271 | X | 8721233..8721440 | 226..19 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:51:08 has no hits.
BO06029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:48 Download gff for
BO06029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 18..729 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:53 Download gff for
BO06029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 18..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:48 Download gff for
BO06029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..797 | 19..729 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:30 Download gff for
BO06029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..797 | 19..729 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:30 Download gff for
BO06029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8720606..8721109 | 226..729 | 100 | -> | Minus |
X | 8721234..8721440 | 19..225 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:48 Download gff for
BO06029.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8614639..8615142 | 226..729 | 100 | -> | Minus |
arm_X | 8615267..8615473 | 19..225 | 100 | | Minus |
BO06029.5prime Sequence
743 bp (721 high quality bases) assembled on 2005-12-02
> BO06029.5prime
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAAGCAAGCTTTCTAGACC
BO06029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-PA | 714 | CG1789-RA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 860 | CG1789-RA | 87..797 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8720606..8721109 | 17..520 | 2520 | 100 | Plus |
X | 23542271 | X | 8721233..8721440 | 520..727 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:11:23 has no hits.
BO06029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:49 Download gff for
BO06029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:55 Download gff for
BO06029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-PA | 1..714 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:04 Download gff for
BO06029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..797 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:24:37 Download gff for
BO06029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..797 | 17..727 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:24:37 Download gff for
BO06029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8720606..8721109 | 17..520 | 100 | -> | Plus |
X | 8721234..8721440 | 521..727 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:04 Download gff for
BO06029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8614639..8615142 | 17..520 | 100 | -> | Plus |
arm_X | 8615267..8615473 | 521..727 | 100 | | Plus |
BO06029.complete Sequence
745 bp (745 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630237
> BO06029.complete
GAAGTTATCAGTCGACATGTCATCGTGGAAGAATGCGTCGAAAAGCAACC
AGAAGGTGCACAGGGAGCGCCACCAGCCGGAGTCGCGCCAGCATCTGGGA
TTCCTGGAGAAGAAAAAGGACTACAAGAAGCGAGCCATCGACGCACAGAA
AAAGCAAAAGACCTTGAAGCTATTGTACCGCCGGGCGCAGAACAAGAATC
CCGATGAGTTCTACCACCATATGATCAACTCCAAGCTGTCCAACGATGAG
CACCACGAGAAGGACACGAAGGACGAGCACACGCCCGAGCAATTGGCCCT
CATGCAGACGCAGGACCTCAAGTACGTGGTGATGAAGCGCACCATGGAGC
GCAAGAAGATCGAACGCTTGAAGGCCTCGCTGGTGGACGTGGATGCCATT
AAGGGAGCAGCCAACAAACGTATCAAATTTGACGAAGACGGATACATGGA
GTTGGACATGGGCGAATGGCTTTTAAAGCATGATGACGAGGAGGAAGAGG
AGGAAAAGAAGAAGAAATCGAAAACAACTGAACCAAACCCCATCAAACAG
CAGCGCATCAACGAGCTGAAGAAACGCGAGCAGCGTGAAAGGGAACTCGG
CATCGTCCAGCAGAAGATTCAGCTGAAGAACACCCTCAAGCAGCCACGCC
TACTGAAGCCGAGGAAAATAAAGCCGGGAACCAAGGACAGTGCGCCCGTC
TACAAATTCCGCTACGAACGCAAGAAAGCAAGCTTTCTAGACCAT
BO06029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 714 | CG1789-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-RA | 860 | CG1789-RA | 87..797 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8720606..8721109 | 17..520 | 2520 | 100 | Plus |
X | 23542271 | X | 8721233..8721440 | 520..727 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:52:59 has no hits.
BO06029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:46 Download gff for
BO06029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 1..714 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:21 Download gff for
BO06029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 50..760 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:39 Download gff for
BO06029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..797 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:47 Download gff for
BO06029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 50..760 | 17..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:04 Download gff for
BO06029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1789-RA | 87..797 | 17..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:04 Download gff for
BO06029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8720606..8721109 | 17..520 | 100 | -> | Plus |
X | 8721234..8721440 | 521..729 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:39 Download gff for
BO06029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8615267..8615473 | 521..729 | 99 | | Plus |
arm_X | 8614639..8615142 | 17..520 | 100 | -> | Plus |
BO06029.pep Sequence
Translation from 16 to 745
> BO06029.pep
MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTL
KLLYRRAQNKNPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQD
LKYVVMKRTMERKKIERLKASLVDVDAIKGAANKRIKFDEDGYMELDMGE
WLLKHDDEEEEEEKKKKSKTTEPNPIKQQRINELKKREQRERELGIVQQK
IQLKNTLKQPRLLKPRKIKPGTKDSAPVYKFRYERKKASFLDH
BO06029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1789-PA | 237 | CG1789-PA | 1..237 | 1..237 | 1234 | 100 | Plus |