Clone Sequence Records
BO06030.3prime Sequence
866 bp (822 high quality bases) assembled on 2005-12-02
> BO06030.3prime
ATGGTCTAGAAAGCTTGCCGTTGATCCATTGGAAGATTCCTCCTGTGCCT
CGGATTTGTCCTCCTCCTTGCTGTCACCATCGGCATCTGTTCCATCATCG
CCAGGTTGGCTTGGATCTGGATTGCTGGAGCTACTGCCGTTGCTCTCGGC
CAAATCGTTCTGGTCGAAACCATTCGTGTATTCCGGCGTTGGAGCCGTGT
CATTGGCGCTGGGCGGCGGGGTAATCTTCCGCAGCTGCTGACGGGCGGCA
TGGACGATCTTTTCCAGCTCGACGCACTCCGTCTCGATCTCGTAGTTCTT
GGAGACCAGCAGCACCCAATGGGCTTCCAGGGAGCGCAGTCGCTCGCCGG
CCTGCGTTTGCGCCTGCTTGCGCTGCCAGTTGACATCTTGAATGTCCTTC
TTCAGCTGCTGCAGCTGGAGCTGCGCCTTCGCCTGCATGGCGGTGAAGAC
CTCCAGGTAGGACTTCCATGCCTCCGTGCCGTAGTCGAGCATTAGCTCCA
GGTTGAGAGAGCGCACCCACTGGTGCTCCAGCTGGGCCATCGAGTTCTCA
ATGGCCTCCTGCCAGGCGGACACCTCCGACAATTTGCCCGATGGCGGCGG
TGGCAGTTCGTAGCGCTTCATGGAGAGCGTCTCCATGGGCAGGCGGTTCT
GGATGCGCTCGAACTCGTTGGCCATCAGCGGAGTCTCAAAGGGCGAGCTG
GCGGGCAGTGGCAGATGGTCAAGGTAATTTTTTGTGGGCCTATAGCGCCG
GCATTCCTCCTCCACCATGGCGAGAGCCGATTCCCGGACGCCCACATCGT
CATAGCCGTGATCTATGTAGGGCAGAGCATCCACAATAACTTCGCCAGCC
ATGTCGACTGATAACT
BO06030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4980-PA | 837 | CG4980-RA | 1..834 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..917 | 852..19 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921373..27922132 | 19..778 | 3800 | 100 | Plus |
| 3R | 32079331 | 3R | 27922198..27922273 | 777..852 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:51:11 has no hits.
BO06030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:50 Download gff for
BO06030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:56 Download gff for
BO06030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 18..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:29 Download gff for
BO06030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 10..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:58:04 Download gff for
BO06030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 10..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:58:04 Download gff for
BO06030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921366..27922131 | 10..777 | 99 | <- | Plus |
| 3R | 27922199..27922273 | 778..852 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:29 Download gff for
BO06030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747088..23747853 | 10..777 | 99 | <- | Plus |
| arm_3R | 23747921..23747995 | 778..852 | 100 | | Plus |
BO06030.5prime Sequence
866 bp (800 high quality bases) assembled on 2005-12-02
> BO06030.5prime
GAAGTTATCAGTCGACATGGCTGGCGAAGTTATTGTGGATGCTCTGCCCT
ACATAGATCACGGCTATGACGATGTGGGCGTCCGGGAATCGGCTCTCGCC
ATGGTGGAGGAGGAATGCCGGCGCTATAGGCCCACAAAAAATTACCTTGA
CCATCTGCCACTGCCCGCCAGCTCGCCCTTTGAGACTCCGCTGATGGCCA
ACGAGTTCGAGCGCATCCAGAACCGCCTGCCCATGGAGACGCTCTCCATG
AAGCGCTACGAACTGCCACCGCCGCCATCGGGCAAATTGTCGGAGGTGTC
CGCCTGGCAGGAGGCCATTGAGAACTCGATGGCCCAGCTGGAGCACCAGT
GGGTGCGCTCTCTCAACCTGGAGCTAATGCTCGACTACGGCACGGAGGCA
TGGAAGTCCTACCTGGAGGTCTTCACCGCCATGCAGGCGAAGGCGCAGCT
CCAGCTGCAGCAGCTGAAGAAGGACATTCAAGATGTCAACTGGCAGCGCA
AGCAGGCGCAAACGCAGGCCGGCGAGCGACTGCGCTCCCTGGAAGCCCAT
TGGGTGCTGCTGGTCTCCAAGAACTACGAGATCGAGACGGAGTGCGTCGA
GCTGGAAAAGATCGTCCATGCCGCCCGTCAGCAGCTGCGGAAGATTACCC
CGCCGCCCAGCGCCAATGACACGGCTCCAACGCCGGAATACACGAATGGT
TTCGACCAGAACGATTTGGCCGAGAGCAACGGCAGTAGCTCCAGCAATCC
AGATCCAAGCCAACCTGGCGATGATGGAACAGATGCCGATGGTGACAGCA
AGGAGGAGGACAAATCCGAGGCACAGGAGGAATCTTTCAATGGATCAACG
GCAAGCTTTCTAGACC
BO06030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4980-PA | 837 | CG4980-RA | 1..834 | 17..850 | 4145 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..917 | 17..850 | 4155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921373..27922132 | 850..91 | 3785 | 99.9 | Minus |
| 3R | 32079331 | 3R | 27922198..27922273 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:49:31 has no hits.
BO06030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:52 Download gff for
BO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:57 Download gff for
BO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-PA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:06 Download gff for
BO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:13:35 Download gff for
BO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..924 | 17..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:13:35 Download gff for
BO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921366..27922131 | 92..859 | 99 | <- | Minus |
| 3R | 27922199..27922273 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:06 Download gff for
BO06030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747088..23747853 | 92..859 | 99 | <- | Minus |
| arm_3R | 23747921..23747995 | 17..91 | 100 | | Minus |
BO06030.complete Sequence
868 bp (868 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630238
> BO06030.complete
GAAGTTATCAGTCGACATGGCTGGCGAAGTTATTGTGGATGCTCTGCCCT
ACATAGATCACGGCTATGACGATGTGGGCGTCCGGGAATCGGCTCTCGCC
ATGGTGGAGGAGGAATGCCGGCGCTATAGGCCCACAAAAAATTACCTTGA
CCATCTGCCACTGCCCGCCAGCTCGCCCTTTGAGACTCCGCTGATGGCCA
ACGAGTTCGAGCGCATCCAGAACCGCCTGCCCATGGAGACGCTCTCCATG
AAGCGCTACGAACTGCCACCGCCGCCATCGGGCAAATTGTCGGAGGTGTC
CGCCTGGCAGGAGGCCATTGAGAACTCGATGGCCCAGCTGGAGCACCAGT
GGGTGCGCTCTCTCAACCTGGAGCTAATGCTCGACTACGGCACGGAGGCA
TGGAAGTCCTACCTGGAGGTCTTCACCGCCATGCAGGCGAAGGCGCAGCT
CCAGCTGCAGCAGCTGAAGAAGGACATTCAAGATGTCAACTGGCAGCGCA
AGCAGGCGCAAACGCAGGCCGGCGAGCGACTGCGCTCCCTGGAAGCCCAT
TGGGTGCTGCTGGTCTCCAAGAACTACGAGATCGAGACGGAGTGCGTCGA
GCTGGAAAAGATCGTCCATGCCGCCCGTCAGCAGCTGCGGAAGATTACCC
CGCCGCCCAGCGCCAATGACACGGCTCCAACGCCGGAATACACGAATGGT
TTCGACCAGAACGATTTGGCCGAGAGCAACGGCAGTAGCTCCAGCAATCC
AGATCCAAGCCAACCTGGCGATGATGGAACAGATGCCGATGGTGACAGCA
AGGAGGAGGACAAATCCGAGGCACAGGAGGAATCTTCCAATGGATCAACG
GCAAGCTTTCTAGACCAT
BO06030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 837 | CG4980-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-RA | 1007 | CG4980-RA | 84..917 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27921373..27922132 | 850..91 | 3800 | 100 | Minus |
| 3R | 32079331 | 3R | 27922198..27922273 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:31:33 has no hits.
BO06030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:48 Download gff for
BO06030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-RA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:22 Download gff for
BO06030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-RA | 79..919 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:18 Download gff for
BO06030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..917 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:48 Download gff for
BO06030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4980-RA | 79..919 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:57 Download gff for
BO06030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BCAS2-RA | 84..917 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:57 Download gff for
BO06030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27921371..27922131 | 92..852 | 99 | <- | Minus |
| 3R | 27922199..27922273 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:18 Download gff for
BO06030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23747093..23747853 | 92..852 | 99 | <- | Minus |
| arm_3R | 23747921..23747995 | 17..91 | 100 | | Minus |
BO06030.pep Sequence
Translation from 16 to 868
> BO06030.pep
MAGEVIVDALPYIDHGYDDVGVRESALAMVEEECRRYRPTKNYLDHLPLP
ASSPFETPLMANEFERIQNRLPMETLSMKRYELPPPPSGKLSEVSAWQEA
IENSMAQLEHQWVRSLNLELMLDYGTEAWKSYLEVFTAMQAKAQLQLQQL
KKDIQDVNWQRKQAQTQAGERLRSLEAHWVLLVSKNYEIETECVELEKIV
HAARQQLRKITPPPSANDTAPTPEYTNGFDQNDLAESNGSSSSNPDPSQP
GDDGTDADGDSKEEDKSEAQEESSNGSTASFLDH
BO06030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BCAS2-PA | 278 | CG4980-PA | 1..278 | 1..278 | 1452 | 100 | Plus |
