Clone Sequence Records
BO06031.3prime Sequence
936 bp (918 high quality bases) assembled on 2005-12-02
> BO06031.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCACTACGTTCATGTCCAGGAGAAGCT
TTTTGGTCTGCAGATCAATGAGCCGCCGCTTGGCCCTGGCCAACTCGGCC
ATCTCGTTGTAGTATATCGTTTCCGCCTTGAGCTTCTCGTCCAGCTGTGT
GGTGGACTCCGCCAGCGAGGCGCTGTCCTGCGGAATCATGTTCTGCATCT
CCGCCGGCTCCGGCTCATCGCACCTGTCCACCACCACGGAGTCCGAGTTG
TCCACAACGTACTCGTAGAAGGGTTCCTGCAGCGAAATCGAAGTGACCTC
TTCTTCAAGGTGATCGGCCACCTTTTCGATGATGCTGTCCACATCGTCAA
AGTTGACTTTCTCCAGGGGATCAGCCGCCTGCCTACGCTCCAGGCTGGCG
TAGGAGTCCTTCTTGGGTGTCATGAGGTGCTGGTGCGAGTGATTCAGCGT
CTTGGCCAGGCTGGTGTGACGACGCACAATGTGTCGCATCAGATTGGAGG
ACGAGTGCTTCGAGGAGAGCGTCTTGCCGCAGTGCATACATTTGGCCATG
AATTCGGAGATGCGGATAAAGTGCGCCCACAGTTTATTGTTCTTCCCAAT
GACCTTGTTGCGCATCTCCTCCTGGCTGTGCCGCTCCATCTGCTCTTGTT
CGAGCTTCGCGTTCATGATGCCGCGCACCGCCGACTTGGTCTCGCCCTCT
CCGAGCTCCATGCTCAGGTCCTCGGAGGCGGAGGCTTCCAGCTCGTCCTT
CAGCTCCGCCAGCATCTTACCCTCCTCGCCGGCAAAAATTGATCGGGCCA
AGAGCTTGTGGTTCCGGATTAAGTGGCGCGTCAAGTTGGAGGATGTGTGT
TTGGAGGACAATGTCTTCTCGCAGTGTTTGCACTGAACTATGTACTCGGT
CAGTCGGTGGAAGTGCGCTAGAGCCTTGAAGTTTTT
BO06031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-PA | 930 | CG15514-RA | 10..927 | 936..19 | 4590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-RA | 1369 | CG15514-RA | 150..1067 | 936..19 | 4590 | 100 | Minus |
| CG15514-RB | 1348 | CG15514-RB | 150..1046 | 936..19 | 4265 | 97.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29860705..29861345 | 296..936 | 3205 | 100 | Plus |
| 3R | 32079331 | 3R | 29860357..29860637 | 19..299 | 1405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:43:19 has no hits.
BO06031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:53 Download gff for
BO06031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-PA | 10..930 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:05:59 Download gff for
BO06031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-PA | 10..930 | 18..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:13:58 Download gff for
BO06031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 150..1071 | 13..936 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:38 Download gff for
BO06031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 150..1071 | 13..936 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:38 Download gff for
BO06031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29860353..29860635 | 13..297 | 98 | <- | Plus |
| 3R | 29860707..29861345 | 298..936 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:13:58 Download gff for
BO06031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25686075..25686357 | 13..297 | 98 | <- | Plus |
| arm_3R | 25686429..25687067 | 298..936 | 100 | | Plus |
BO06031.5prime Sequence
912 bp (780 high quality bases) assembled on 2005-12-02
> BO06031.5prime
GAAGTTATCAGTCGACATGGTTGGGAAAAACTTCAAGGCTCTAGCGCACT
TCCACCGACTGACCGAGTACATAGTTCAGTGCAAACACTGCGAGAAGACA
TTGTCCTCCAAACACACATCCTCCAACTTGACGCGCCACTTAATCCGGAA
CCACAAGCTCTTGGCCCGATCAATTTTTGCCGGCGAGGAGGGTAAGATGC
TGGCGGAGCTGAAGGACGAGCTGGAAGCCTCCGCCTCCGAGGACCTGAGC
ATGGAGCTCGGAGAGGGCGAGACCAAGTCGGCGGTGCGCGGCATCATGAA
CGCGAAGCTCGAACAAGAGCAGATGGAGCGGCACAGCCAGGAGGAGATGC
GCAACAAGGTCATTGGGAAGAACAATAAACTGTGGGCGCACTTTATCCGC
ATCTCCGAATTCATGGCCAAATGTATGCACTGCGGCAAGACGCTCTCCTC
GAAGCACTCGTCCTCCAATCTGATGCGACACATTGTGCGTCGTCACACCA
GCCTGGCCAAGACGCTGAATCACTCGCACCAGCACCTCATGACACCCAAG
AAGGACTCCTACGCCAGCCTGGAGCGTAGGCAGGCGGCTGATCCCCTGGA
GAAAGTCAACTTTGACGATGTGGACAGCATCATCGAAAAGGTGGCCGATC
ACCTTGAAGAAGAGGTCACTTCGATTTCGCTGCAGGAACCCTTCTACGAG
TACGTTGTGGACAACTCGGACTCCGTGGTGGTGGACAGGTGCGATGAGCC
GGAGCCGGCGGAGATGCAGAACATGATTCCGCAAGACAGCGCCTCGCTGG
CGGAGTCCACCACACAGCTGGACGAGAAGCTCAAGGCGGAAACGATATAC
TACACCGAGAAGGCCGAGTTTGGCAGGGGCAAGCGGCGGCTCATTGATCT
GCAGAACAAAAA
BO06031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-PA | 930 | CG15514-RA | 1..896 | 17..912 | 4305 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-RA | 1369 | CG15514-RA | 141..1036 | 17..912 | 4375 | 99.2 | Plus |
| CG15514-RB | 1348 | CG15514-RB | 141..1015 | 17..912 | 4050 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29860705..29861354 | 666..17 | 3250 | 100 | Minus |
| 3R | 32079331 | 3R | 29860388..29860637 | 912..663 | 1145 | 97.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:34 has no hits.
BO06031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:54 Download gff for
BO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:00 Download gff for
BO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:04 Download gff for
BO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 136..1030 | 9..907 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:29:47 Download gff for
BO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 136..1030 | 9..907 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:29:47 Download gff for
BO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29860393..29860635 | 665..907 | 97 | <- | Minus |
| 3R | 29860707..29861359 | 11..664 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:04 Download gff for
BO06031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25686115..25686357 | 665..907 | 97 | <- | Minus |
| arm_3R | 25686429..25687081 | 11..664 | 99 | <- | Minus |
BO06031.complete Sequence
961 bp (961 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630239
> BO06031.complete
GAAGTTATCAGTCGACATGGTTGGGAAAAACTTCAAGGCTCTAGCGCACT
TCCACCGACTGACCGAGTACATAGTTCAGTGCAAACACTGCGAGAAGACA
TTGTCCTCCAAACACACATCCTCCAACTTGACGCGCCACTTAATCCGGAA
CCACAAGCTCTTGGCCCGATCAATTTTTGCCGGCGAGGAGGGTAAGATGC
TGGCGGAGCTGAAGGACGAGCTGGAAGCCTCCGCCTCCGAGGACCTGAGC
ATGGAGCTCGGAGAGGGCGAGACCAAGTCGGCGGTGCGCGGCATCATGAA
CGCGAAGCTCGAACAAGAGCAGATGGAGCGGCACAGCCAGGAGGAGATGC
GCAACAAGGTCATTGGGAAGAACAATAAACTGTGGGCGCACTTTATCCGC
ATCTCCGAATTCATGGCCAAATGTATGCACTGCGGCAAGACGCTCTCCTC
GAAGCACTCGTCCTCCAATCTGATGCGACACATTGTGCGTCGTCACACCA
GCCTGGCCAAGACGCTGAATCACTCGCACCAGCACCTCATGACACCCAAG
AAGGACTCCTACGCCAGCCTGGAGCGTAGGCAGGCGGCTGATCCCCTGGA
GAAAGTCAACTTTGACGATGTGGACAGCATCATCGAAAAGGTGGCCGATC
ACCTTGAAGAAGAGGTCACTTCGATTTCGCTGCAGGAACCCTTCTACGAG
TACGTTGTGGACAACTCGGACTCCGTGGTGGTGGACAGGTGCGATGAGCC
GGAGCCGGCGGAGATGCAGAACATGATTCCGCAGGACAGCGCCTCGCTGG
CGGAGTCCACCACACAGCTGGACGAGAAGCTCAAGGCGGAAACGATATAC
TACAACGAGATGGCCGAGTTGGCCAGGGCCAAGCGGCGGCTCATTGATCT
GCAGACCAAAAAGCTTCTCCTGGACATGAACGTAGTGGACAACGCAAGCT
TTCTAGACCAT
BO06031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-RA | 930 | CG15514-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
| CG15514-RB | 909 | CG15514-PB | 1..906 | 17..943 | 4285 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-RA | 1369 | CG15514-RA | 141..1067 | 17..943 | 4635 | 100 | Plus |
| CG15514-RB | 1348 | CG15514-RB | 141..1046 | 17..943 | 4285 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29860705..29861354 | 666..17 | 3250 | 100 | Minus |
| 3R | 32079331 | 3R | 29860357..29860637 | 943..663 | 1405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:49:05 has no hits.
BO06031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:49 Download gff for
BO06031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 1..930 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:24 Download gff for
BO06031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 117..1052 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:55 Download gff for
BO06031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 141..1067 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:49 Download gff for
BO06031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 117..1052 | 9..949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:40 Download gff for
BO06031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15514-RA | 141..1067 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:40 Download gff for
BO06031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29860353..29860635 | 665..945 | 99 | <- | Minus |
| 3R | 29860707..29861354 | 17..664 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:55 Download gff for
BO06031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25686075..25686357 | 665..945 | 99 | <- | Minus |
| arm_3R | 25686429..25687076 | 17..664 | 100 | | Minus |
BO06031.pep Sequence
Translation from 16 to 961
> BO06031.pep
MVGKNFKALAHFHRLTEYIVQCKHCEKTLSSKHTSSNLTRHLIRNHKLLA
RSIFAGEEGKMLAELKDELEASASEDLSMELGEGETKSAVRGIMNAKLEQ
EQMERHSQEEMRNKVIGKNNKLWAHFIRISEFMAKCMHCGKTLSSKHSSS
NLMRHIVRRHTSLAKTLNHSHQHLMTPKKDSYASLERRQAADPLEKVNFD
DVDSIIEKVADHLEEEVTSISLQEPFYEYVVDNSDSVVVDRCDEPEPAEM
QNMIPQDSASLAESTTQLDEKLKAETIYYNEMAELARAKRRLIDLQTKKL
LLDMNVVDNASFLDH
BO06031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15514-PA | 309 | CG15514-PA | 1..309 | 1..309 | 1577 | 100 | Plus |
| CG15514-PB | 302 | CG15514-PB | 1..302 | 1..309 | 1529 | 97.7 | Plus |
